LamiOmicsDB Lamiaceae Multi-Omics Database
v1 808 species · 3 phylogenies · 6,313 sequences

Pathway-family scientific record

FPPS

Farnesyl diphosphate synthase family

This module includes PlantSME enzyme-family assignments and traceable candidate protein identifiers from genome-derived or transcriptome-derived protein sets.

Browse candidatesCompare speciesCSV
Stable locus plantsmeTerpenoid biosynthesis
Public candidate IDs
4,000
Species with candidates
80
Species with assignments
80
Source assignments
80,191
Gene-tree candidates
0
Motif candidates
0

Evidence profile

Available evidence layers

◆Candidate identifiers4,000 public species-linked identifiers can be inspected.
GTGene-tree workflow0 comparable source candidates; 0 high-confidence source calls.
MMotif-screen proxy0 motif-screen candidates; 0 with all required motif proxies.
100 kbLocal clustering proxy0 clusters across 0 species; maximum cluster size 0.

Comparative signature

Lamiaceae comparison fields

Rate delta
Not calculated
Prevalence delta
Not calculated
Comparable source
PlantSME family assignments
Comparable source count
80,191
Public candidate count
4,000
Evidence mode
plantsme

Species coverage

Assignment and locus coverage by species

Source family counts and public candidate identifiers are shown in separate columns.

SpeciesEvidence stateSource countCandidate IDsExpression
Pogostemon cablinLamioideae · Pogostemon Stable locus 3,72450 Available
Teucrium chamaedrysAjugoideae · Teucrium Stable locus 3,02850 No matrix
Nepeta catariaNepetoideae · Nepeta Stable locus 2,59550 Available
Ocimum basilicumNepetoideae · Ocimum Stable locus 2,48850 Available
Salvia splendensNepetoideae · Salvia Stable locus 2,43250 No matrix
Callicarpa americanaCallicarpoideae · Callicarpa Stable locus 2,41350 No matrix
Teucrium marumAjugoideae · Teucrium Stable locus 1,97350 No matrix
Hyssopus officinalisNepetoideae · Hyssopus Stable locus 1,68550 No matrix
Elsholtzia splendensNepetoideae · Elsholtzia Stable locus 1,66150 No matrix
Salvia rosmarinusNepetoideae · Salvia Stable locus 1,59150 Available
Salvia hispanicaNepetoideae · Salvia Stable locus 1,49950 No matrix
Nepeta mussiniiNepetoideae · Nepeta Stable locus 1,46850 Available
Stenogyne calaminthoidesLamioideae · Stenogyne Stable locus 1,43550 No matrix
Phlomoides rotataLamioideae · Phlomoides Stable locus 1,33850 No matrix
Tectona grandisTectonoideae · Tectona Stable locus 1,18750 Available
Clinopodium barosmumNepetoideae · Clinopodium Stable locus 1,17750 No matrix
Salvia divinorumNepetoideae · Salvia Stable locus 1,11250 No matrix
Origanum vulgareNepetoideae · Origanum Stable locus 1,08850 No matrix
Perilla frutescensNepetoideae · Perilla Stable locus 1,07550 No matrix
Dracocephalum rupestreNepetoideae · Dracocephalum Stable locus 1,04950 No matrix
Ocimum tenuiflorumNepetoideae · Ocimum Stable locus 1,03050 No matrix
Prunella vulgarisNepetoideae · Prunella Stable locus 99850 No matrix
Glechoma longitubaNepetoideae · Glechoma Stable locus 98150 No matrix
Isodon lophanthoidesNepetoideae · Isodon Stable locus 97850 No matrix
Plectranthus barbatusNepetoideae · Plectranthus Stable locus 89950 No matrix
Callicarpa nudifloraCallicarpoideae · Callicarpa Stable locus 87550 No matrix
Thymus quinquecostatusNepetoideae · Thymus Stable locus 87150 No matrix
Ajuga decumbensAjugoideae · Ajuga Stable locus 86550 No matrix
Scutellaria baicalensisScutellarioideae · Scutellaria Stable locus 86450 No matrix
Mosla chinensisNepetoideae · Mosla Stable locus 86350 No matrix
Mosla soochowensisNepetoideae · Mosla Stable locus 85650 No matrix
Rotheca myricoidesAjugoideae · Rotheca Stable locus 84250 No matrix
Clinopodium gracileNepetoideae · Clinopodium Stable locus 83950 No matrix
Scutellaria barbataScutellarioideae · Scutellaria Stable locus 81650 No matrix
Collinsonia canadensisNepetoideae · Collinsonia Stable locus 79750 No matrix
Phlomis fruticosaLamioideae · Phlomis Stable locus 79750 No matrix
Hyptis suaveolensNepetoideae · Hyptis Stable locus 79050 No matrix
Cornutia pyramidataPremnoideae · Cornutia Stable locus 78750 No matrix
Vitex agnus-castusViticoideae · Vitex Stable locus 78750 No matrix
Isodon serraNepetoideae · Isodon Stable locus 78150 No matrix
Mentha x piperitaNepetoideae · Mentha Stable locus 76750 No matrix
Lavandula angustifoliaNepetoideae · Lavandula Stable locus 75950 No matrix
Thymus vulgarisNepetoideae · Thymus Stable locus 75950 No matrix
Salvia miltiorrhizaNepetoideae · Salvia Stable locus 74850 Available
Glechoma hederaceaNepetoideae · Glechoma Stable locus 74350 No matrix
Salvia officinalisNepetoideae · Salvia Stable locus 74150 No matrix
Clerodendrum bungeiAjugoideae · Clerodendrum Stable locus 73950 No matrix
Leonurus japonicusLamioideae · Leonurus Stable locus 72650 No matrix
Salvia bowleyanaNepetoideae · Salvia Stable locus 72650 No matrix
Stachys officinalisLamioideae · Stachys Stable locus 71950 No matrix
Schizonepeta tenuifoliaNepetoideae · Schizonepeta Stable locus 71650 No matrix
Holmskioldia sanguineaScutellarioideae · Holmskioldia Stable locus 71150 No matrix
Mentha spicataNepetoideae · Mentha Stable locus 71150 No matrix
Perovskia atriplicifoliaNepetoideae · Perovskia Stable locus 70750 No matrix
Marmoritis complanataNepetoideae · Marmoritis Stable locus 70450 No matrix
Origanum majoranaNepetoideae · Origanum Stable locus 69850 No matrix
Premna microphyllaPremnoideae · Premna Stable locus 69050 No matrix
Congea tomentosaSymphorematoideae · Congea Stable locus 68550 No matrix
Teucrium canadenseAjugoideae · Teucrium Stable locus 68050 No matrix
Lamium albumLamioideae · Lamium Stable locus 67250 No matrix
Agastache rugosaNepetoideae · Agastache Stable locus 67150 No matrix
Petraeovitex bambusetoriumPeronematoideae · Petraeovitex Stable locus 67050 No matrix
Monarda didymaNepetoideae · Monarda Stable locus 66950 No matrix
Agastache foeniculumNepetoideae · Agastache Stable locus 66750 No matrix
Ballota pseudodictamnusLamioideae · Ballota Stable locus 66650 No matrix
Ajuga reptansAjugoideae · Ajuga Stable locus 66350 No matrix
Lycopus americanusNepetoideae · Lycopus Stable locus 65950 No matrix
Leonurus sibiricusLamioideae · Leonurus Stable locus 65350 No matrix
Perilla citriodoraNepetoideae · Perilla Stable locus 65150 No matrix
Perilla frutescens var. hirtellaNepetoideae · Perilla Stable locus 65150 No matrix
Gmelina philippensisPremnoideae · Gmelina Stable locus 64250 No matrix
Leonotis leonurusLamioideae · Leonotis Stable locus 63750 No matrix
Melissa officinalisNepetoideae · Melissa Stable locus 63250 No matrix
Marrubium vulgareLamioideae · Marrubium Stable locus 61650 No matrix
Mentha longifoliaNepetoideae · Mentha Stable locus 61350 Available
Leonurus cardiacaLamioideae · Leonurus Stable locus 60650 No matrix
Prostanthera lasianthosProstantheroideae · Prostanthera Stable locus 60250 No matrix
Westringia fruticosaProstantheroideae · Westringia Stable locus 57150 No matrix
Drepanocaryum sewerzowiiNepetoideae · Drepanocaryum Stable locus 54450 No matrix
Salvia sclareaNepetoideae · Salvia Stable locus 37350 No matrix

Candidate records

Traceable candidate identifiers

Filter and inspect candidate identifiers for this family.

Clear
Candidate IDSpeciesPathway / familyEvidenceConfidenceIdentityHMM score
ORMA_c42913_g1_i2_len_2215
Origanum majoranaTerpenoid · FPPSblast+hmm High 33.2%338.0
Roff10590075870
Salvia rosmarinusTerpenoid · FPPSblast+hmm High 36.9%338.0
Teum.01G031770.1
Teucrium marumTerpenoid · FPPSblast+hmm High 36.7%338.0
Teum.01G031770.10
Teucrium marumTerpenoid · FPPSblast+hmm High 36.7%338.0
Teum.01G031770.12
Teucrium marumTerpenoid · FPPSblast+hmm High 36.7%338.0
Teum.01G031770.13
Teucrium marumTerpenoid · FPPSblast+hmm High 36.7%338.0
Teum.01G031770.14
Teucrium marumTerpenoid · FPPSblast+hmm High 36.7%338.0
Teum.01G031770.3
Teucrium marumTerpenoid · FPPSblast+hmm High 36.7%338.0
Teum.01G031770.4
Teucrium marumTerpenoid · FPPSblast+hmm High 36.7%338.0
Teum.01G031770.6
Teucrium marumTerpenoid · FPPSblast+hmm High 36.7%338.0
Teum.01G031770.7
Teucrium marumTerpenoid · FPPSblast+hmm High 36.7%338.0
Teum.01G031770.9
Teucrium marumTerpenoid · FPPSblast+hmm High 36.7%338.0
CAame08G0029310.v1.94
Callicarpa americanaTerpenoid · FPPSblast+hmm High 36.6%337.9
CAame08G0029320.v1.94
Callicarpa americanaTerpenoid · FPPSblast+hmm High 36.6%337.9
CAame08G0029330.v1.94
Callicarpa americanaTerpenoid · FPPSblast+hmm High 36.6%337.9
Mlonscaffold_6_length_375374740149730.1.v1.326
Mentha longifoliaTerpenoid · FPPSblast+hmm High 34.8%337.9
evm.model.LG15.669
Clinopodium barosmumTerpenoid · FPPSblast+hmm High 35.4%337.9
THVU_c74381_g3_i1_len_1858
Thymus vulgarisTerpenoid · FPPSblast+hmm High 34.1%337.8
Teucrium_chamaedrys__Tcha156542
Teucrium chamaedrysTerpenoid · FPPSblast+hmm High 38.2%337.7
rna-gnl|WGS:QFCC|chr19_10067313_10069171.mrna1
Perilla frutescensTerpenoid · FPPSblast+hmm High 36.1%337.6
COPY_c72384_g1_i3_len_1938
Cornutia pyramidataTerpenoid · FPPSblast+hmm High 35.7%337.5
evm.model.LG17.616
Clinopodium barosmumTerpenoid · FPPSblast+hmm High 33.6%337.5
MODI_c35169_g1_i4_len_1754
Monarda didymaTerpenoid · FPPSblast+hmm High 33.6%337.4
Teucrium_chamaedrys__Tcha64799
Teucrium chamaedrysTerpenoid · FPPSblast+hmm High 32.8%337.4
origanum_vulgare_124605.g41.t1
Origanum vulgareTerpenoid · FPPSblast+hmm High 33.3%337.4
origanum_vulgare_124605.g41.t1.1.5db0b4c2
Origanum vulgareTerpenoid · FPPSblast+hmm High 33.3%337.4
Clgra_016745-T1
Clinopodium gracileTerpenoid · FPPSblast+hmm High 36.6%337.3
PEAT_c29999_g1_i1_len_1753
Perovskia atriplicifoliaTerpenoid · FPPSblast+hmm High 34.1%337.3
TECA_c32625_g3_i1_len_2101
Teucrium canadenseTerpenoid · FPPSblast+hmm High 38.6%337.3
rna-gnl|WGS:QFCC|chr04_67898393_67900812.mrna1
Perilla frutescensTerpenoid · FPPSblast+hmm High 33.6%337.3
rna-gnl|WGS:QIYW|chr03_00153670_00156083.mrna1
Perilla citriodoraTerpenoid · FPPSblast+hmm High 33.6%337.3
rna-gnl|WGS:QIYW|chr03_00153670_00156083.mrna1
Perilla frutescens var. hirtellaTerpenoid · FPPSblast+hmm High 33.6%337.3
g4008.t1
Ajuga decumbensTerpenoid · FPPSblast+hmm High 35.6%337.2
scutellaria_barbata_GWHPAOTP004246
Scutellaria barbataTerpenoid · FPPSblast+hmm High 36.8%337.2
HYSU_c31290_g1_i2_len_1564
Hyptis suaveolensTerpenoid · FPPSblast+hmm High 37.8%337.1
evm.model.LG05.1450
Clinopodium barosmumTerpenoid · FPPSblast+hmm High 36.4%337.1
Es3A.G042200.t3
Elsholtzia splendensTerpenoid · FPPSblast+hmm High 41.0%337.0
scutellaria_barbata_GWHPAOTP005455
Scutellaria barbataTerpenoid · FPPSblast+hmm High 34.3%337.0
SAOF_c28474_g2_i3_len_1506
Salvia officinalisTerpenoid · FPPSblast+hmm High 35.4%336.9
STOF_c57469_g2_i1_len_1478
Stachys officinalisTerpenoid · FPPSblast+hmm High 37.9%336.9
Es3B.G042000.t3
Elsholtzia splendensTerpenoid · FPPSblast+hmm High 41.0%336.8
Sch000008367
Schizonepeta tenuifoliaTerpenoid · FPPSblast+hmm High 37.3%336.8
1842.g37.t1
Ocimum basilicumTerpenoid · FPPSblast+hmm High 36.6%336.7
AJRE_c45770_g2_i1_len_1609
Ajuga reptansTerpenoid · FPPSblast+hmm High 39.1%336.7
412900.g1.t1
Ocimum basilicumTerpenoid · FPPSblast+hmm High 36.3%336.5
HYSU_c75292_g1_i1_len_1567
Hyptis suaveolensTerpenoid · FPPSblast+hmm High 36.2%336.5
evm.model.LG11.1583
Clinopodium barosmumTerpenoid · FPPSblast+hmm High 37.0%336.5
MACO_g10615.t1
Marmoritis complanataTerpenoid · FPPSblast+hmm High 34.7%336.4
MEPI_c61873_g1_i4_len_1647
Mentha x piperitaTerpenoid · FPPSblast+hmm High 36.2%336.4
g15051.t1
Ajuga decumbensTerpenoid · FPPSblast+hmm High 39.1%336.4