Pathway-family scientific record

`FPPS`

Farnesyl diphosphate synthase family

This module includes PlantSME enzyme-family assignments and traceable candidate protein identifiers from genome-derived or transcriptome-derived protein sets.

Browse candidates Compare species CSV

Stable locus plantsmeTerpenoid biosynthesis

Public candidate IDs: 4,000
Species with candidates: 80
Species with assignments: 80
Source assignments: 80,191
Gene-tree candidates: 0
Motif candidates: 0

Evidence profile

Available evidence layers

◆Candidate identifiers4,000 public species-linked identifiers can be inspected.

GTGene-tree workflow0 comparable source candidates; 0 high-confidence source calls.

MMotif-screen proxy0 motif-screen candidates; 0 with all required motif proxies.

100 kbLocal clustering proxy0 clusters across 0 species; maximum cluster size 0.

Comparative signature

Lamiaceae comparison fields

Rate delta: Not calculated
Prevalence delta: Not calculated
Comparable source: PlantSME family assignments
Comparable source count: 80,191
Public candidate count: 4,000
Evidence mode: plantsme

Species coverage

Assignment and locus coverage by species

Source family counts and public candidate identifiers are shown in separate columns.

Species	Evidence state	Source count	Candidate IDs	Expression
Pogostemon cablinLamioideae · Pogostemon	Stable locus	3,724	50	Available
Teucrium chamaedrysAjugoideae · Teucrium	Stable locus	3,028	50	No matrix
Nepeta catariaNepetoideae · Nepeta	Stable locus	2,595	50	Available
Ocimum basilicumNepetoideae · Ocimum	Stable locus	2,488	50	Available
Salvia splendensNepetoideae · Salvia	Stable locus	2,432	50	No matrix
Callicarpa americanaCallicarpoideae · Callicarpa	Stable locus	2,413	50	No matrix
Teucrium marumAjugoideae · Teucrium	Stable locus	1,973	50	No matrix
Hyssopus officinalisNepetoideae · Hyssopus	Stable locus	1,685	50	No matrix
Elsholtzia splendensNepetoideae · Elsholtzia	Stable locus	1,661	50	No matrix
Salvia rosmarinusNepetoideae · Salvia	Stable locus	1,591	50	Available
Salvia hispanicaNepetoideae · Salvia	Stable locus	1,499	50	No matrix
Nepeta mussiniiNepetoideae · Nepeta	Stable locus	1,468	50	Available
Stenogyne calaminthoidesLamioideae · Stenogyne	Stable locus	1,435	50	No matrix
Phlomoides rotataLamioideae · Phlomoides	Stable locus	1,338	50	No matrix
Tectona grandisTectonoideae · Tectona	Stable locus	1,187	50	Available
Clinopodium barosmumNepetoideae · Clinopodium	Stable locus	1,177	50	No matrix
Salvia divinorumNepetoideae · Salvia	Stable locus	1,112	50	No matrix
Origanum vulgareNepetoideae · Origanum	Stable locus	1,088	50	No matrix
Perilla frutescensNepetoideae · Perilla	Stable locus	1,075	50	No matrix
Dracocephalum rupestreNepetoideae · Dracocephalum	Stable locus	1,049	50	No matrix
Ocimum tenuiflorumNepetoideae · Ocimum	Stable locus	1,030	50	No matrix
Prunella vulgarisNepetoideae · Prunella	Stable locus	998	50	No matrix
Glechoma longitubaNepetoideae · Glechoma	Stable locus	981	50	No matrix
Isodon lophanthoidesNepetoideae · Isodon	Stable locus	978	50	No matrix
Plectranthus barbatusNepetoideae · Plectranthus	Stable locus	899	50	No matrix
Callicarpa nudifloraCallicarpoideae · Callicarpa	Stable locus	875	50	No matrix
Thymus quinquecostatusNepetoideae · Thymus	Stable locus	871	50	No matrix
Ajuga decumbensAjugoideae · Ajuga	Stable locus	865	50	No matrix
Scutellaria baicalensisScutellarioideae · Scutellaria	Stable locus	864	50	No matrix
Mosla chinensisNepetoideae · Mosla	Stable locus	863	50	No matrix
Mosla soochowensisNepetoideae · Mosla	Stable locus	856	50	No matrix
Rotheca myricoidesAjugoideae · Rotheca	Stable locus	842	50	No matrix
Clinopodium gracileNepetoideae · Clinopodium	Stable locus	839	50	No matrix
Scutellaria barbataScutellarioideae · Scutellaria	Stable locus	816	50	No matrix
Collinsonia canadensisNepetoideae · Collinsonia	Stable locus	797	50	No matrix
Phlomis fruticosaLamioideae · Phlomis	Stable locus	797	50	No matrix
Hyptis suaveolensNepetoideae · Hyptis	Stable locus	790	50	No matrix
Cornutia pyramidataPremnoideae · Cornutia	Stable locus	787	50	No matrix
Vitex agnus-castusViticoideae · Vitex	Stable locus	787	50	No matrix
Isodon serraNepetoideae · Isodon	Stable locus	781	50	No matrix
Mentha x piperitaNepetoideae · Mentha	Stable locus	767	50	No matrix
Lavandula angustifoliaNepetoideae · Lavandula	Stable locus	759	50	No matrix
Thymus vulgarisNepetoideae · Thymus	Stable locus	759	50	No matrix
Salvia miltiorrhizaNepetoideae · Salvia	Stable locus	748	50	Available
Glechoma hederaceaNepetoideae · Glechoma	Stable locus	743	50	No matrix
Salvia officinalisNepetoideae · Salvia	Stable locus	741	50	No matrix
Clerodendrum bungeiAjugoideae · Clerodendrum	Stable locus	739	50	No matrix
Leonurus japonicusLamioideae · Leonurus	Stable locus	726	50	No matrix
Salvia bowleyanaNepetoideae · Salvia	Stable locus	726	50	No matrix
Stachys officinalisLamioideae · Stachys	Stable locus	719	50	No matrix
Schizonepeta tenuifoliaNepetoideae · Schizonepeta	Stable locus	716	50	No matrix
Holmskioldia sanguineaScutellarioideae · Holmskioldia	Stable locus	711	50	No matrix
Mentha spicataNepetoideae · Mentha	Stable locus	711	50	No matrix
Perovskia atriplicifoliaNepetoideae · Perovskia	Stable locus	707	50	No matrix
Marmoritis complanataNepetoideae · Marmoritis	Stable locus	704	50	No matrix
Origanum majoranaNepetoideae · Origanum	Stable locus	698	50	No matrix
Premna microphyllaPremnoideae · Premna	Stable locus	690	50	No matrix
Congea tomentosaSymphorematoideae · Congea	Stable locus	685	50	No matrix
Teucrium canadenseAjugoideae · Teucrium	Stable locus	680	50	No matrix
Lamium albumLamioideae · Lamium	Stable locus	672	50	No matrix
Agastache rugosaNepetoideae · Agastache	Stable locus	671	50	No matrix
Petraeovitex bambusetoriumPeronematoideae · Petraeovitex	Stable locus	670	50	No matrix
Monarda didymaNepetoideae · Monarda	Stable locus	669	50	No matrix
Agastache foeniculumNepetoideae · Agastache	Stable locus	667	50	No matrix
Ballota pseudodictamnusLamioideae · Ballota	Stable locus	666	50	No matrix
Ajuga reptansAjugoideae · Ajuga	Stable locus	663	50	No matrix
Lycopus americanusNepetoideae · Lycopus	Stable locus	659	50	No matrix
Leonurus sibiricusLamioideae · Leonurus	Stable locus	653	50	No matrix
Perilla citriodoraNepetoideae · Perilla	Stable locus	651	50	No matrix
Perilla frutescens var. hirtellaNepetoideae · Perilla	Stable locus	651	50	No matrix
Gmelina philippensisPremnoideae · Gmelina	Stable locus	642	50	No matrix
Leonotis leonurusLamioideae · Leonotis	Stable locus	637	50	No matrix
Melissa officinalisNepetoideae · Melissa	Stable locus	632	50	No matrix
Marrubium vulgareLamioideae · Marrubium	Stable locus	616	50	No matrix
Mentha longifoliaNepetoideae · Mentha	Stable locus	613	50	Available
Leonurus cardiacaLamioideae · Leonurus	Stable locus	606	50	No matrix
Prostanthera lasianthosProstantheroideae · Prostanthera	Stable locus	602	50	No matrix
Westringia fruticosaProstantheroideae · Westringia	Stable locus	571	50	No matrix
Drepanocaryum sewerzowiiNepetoideae · Drepanocaryum	Stable locus	544	50	No matrix
Salvia sclareaNepetoideae · Salvia	Stable locus	373	50	No matrix

Candidate records

Traceable candidate identifiers

Filter and inspect candidate identifiers for this family.

Candidate ID	Species	Pathway / family	Evidence	Confidence	Identity	HMM score
Roff19950256880	Salvia rosmarinus	Terpenoid · `FPPS`	blast+hmm	High	33.6%	333.6
Roff19950256890	Salvia rosmarinus	Terpenoid · `FPPS`	blast+hmm	High	33.6%	333.6
tectona_grandis_Tg13g03960.t1	Tectona grandis	Terpenoid · `FPPS`	blast+hmm	High	39.3%	333.6
CAame05G0043500.v1.94	Callicarpa americana	Terpenoid · `FPPS`	blast+hmm	High	38.8%	333.4
LECA_c20909_g1_i4_len_1652	Leonurus cardiaca	Terpenoid · `FPPS`	blast+hmm	High	31.5%	333.4
COCA_c67757_g4_i3_len_1647	Collinsonia canadensis	Terpenoid · `FPPS`	blast+hmm	High	36.5%	333.2
GMPH_c22868_g1_i2_len_1713	Gmelina philippensis	Terpenoid · `FPPS`	blast+hmm	High	41.2%	333.2
PRMI_c43005_g2_i1_len_1522	Premna microphylla	Terpenoid · `FPPS`	blast+hmm	High	38.7%	333.1
evm.model.Chr03.1733	Callicarpa nudiflora	Terpenoid · `FPPS`	blast+hmm	High	38.8%	333.1
Ms_c008g00011.1	Mosla soochowensis	Terpenoid · `FPPS`	blast+hmm	High	35.0%	333.0
GMPH_c35030_g1_i1_len_1826	Gmelina philippensis	Terpenoid · `FPPS`	blast+hmm	High	37.7%	332.9
Mc8g29790.1	Mosla chinensis	Terpenoid · `FPPS`	blast+hmm	High	34.6%	332.9
STOF_c26530_g1_i1_len_1350	Stachys officinalis	Terpenoid · `FPPS`	blast+hmm	High	38.9%	332.9
PLBA_c41369_g1_i4_len_1741	Plectranthus barbatus	Terpenoid · `FPPS`	blast+hmm	High	35.7%	332.8
rna-gnl\|WGS:QFCC\|chr10_00093540_00095363.mrna1	Perilla frutescens	Terpenoid · `FPPS`	blast+hmm	High	35.5%	332.8
rna-gnl\|WGS:QIYW\|PC00000703_00110751_00112553.mrna1	Perilla citriodora	Terpenoid · `FPPS`	blast+hmm	High	35.5%	332.8
rna-gnl\|WGS:QIYW\|PC00000703_00110751_00112553.mrna1	Perilla frutescens var. hirtella	Terpenoid · `FPPS`	blast+hmm	High	35.5%	332.8
rna-gnl\|WGS:QFCC\|chr07_63928592_63930392.mrna1	Perilla frutescens	Terpenoid · `FPPS`	blast+hmm	High	37.3%	332.6
KAL8463667.1	Phlomoides rotata	Terpenoid · `FPPS`	blast+hmm	High	31.1%	332.5
Ls2g30550.1	Leonurus sibiricus	Terpenoid · `FPPS`	blast+hmm	High	37.9%	332.4
TECA_c60859_g1_i1_len_1490	Teucrium canadense	Terpenoid · `FPPS`	blast+hmm	High	40.3%	332.4
evm.model.chr11.113	Prunella vulgaris	Terpenoid · `FPPS`	blast+hmm	High	34.9%	332.4
COPY_c81242_g1_i7_len_1899	Cornutia pyramidata	Terpenoid · `FPPS`	blast+hmm	High	41.2%	332.1
LECA_c28185_g1_i1_len_1576	Leonurus cardiaca	Terpenoid · `FPPS`	blast+hmm	High	37.9%	332.1
Pat_A19G071500.m2	Pogostemon cablin	Terpenoid · `FPPS`	blast+hmm	High	40.6%	332.1
Pat_A19G071500.m3	Pogostemon cablin	Terpenoid · `FPPS`	blast+hmm	High	40.6%	332.1
Pat_A20G064600.m1	Pogostemon cablin	Terpenoid · `FPPS`	blast+hmm	High	40.6%	332.1
Pat_A20G064600.m2	Pogostemon cablin	Terpenoid · `FPPS`	blast+hmm	High	40.6%	332.1
Pat_B19G063500.m1	Pogostemon cablin	Terpenoid · `FPPS`	blast+hmm	High	40.6%	332.0
Pat_B19G063500.m2	Pogostemon cablin	Terpenoid · `FPPS`	blast+hmm	High	40.6%	332.0
CLBU_c48520_g1_i2_len_1834	Clerodendrum bungei	Terpenoid · `FPPS`	blast+hmm	High	40.6%	331.9
Stenogyne_calaminthoides__EVM_prediction_HiC_scaffold_36.931.mRNA1	Stenogyne calaminthoides	Terpenoid · `FPPS`	blast+hmm	High	39.8%	331.8
PEBA_c29998_g1_i1_len_1873	Petraeovitex bambusetorium	Terpenoid · `FPPS`	blast+hmm	High	40.6%	331.7
PLBA_c41953_g1_i1_len_1760	Plectranthus barbatus	Terpenoid · `FPPS`	blast+hmm	High	36.2%	331.6
evm.model.LG11.844	Clinopodium barosmum	Terpenoid · `FPPS`	blast+hmm	High	38.1%	331.6
COCA_c61165_g1_i1_len_1654	Collinsonia canadensis	Terpenoid · `FPPS`	blast+hmm	High	38.2%	331.5
DRSE_g2694.t1	Drepanocaryum sewerzowii	Terpenoid · `FPPS`	blast+hmm	High	39.1%	331.2
KAL1558095.1	Salvia divinorum	Terpenoid · `FPPS`	blast+hmm	High	37.7%	331.2
HOSA_c26387_g1_i2_len_1824	Holmskioldia sanguinea	Terpenoid · `FPPS`	blast+hmm	High	40.6%	331.1
g25110.t1.1.5b2d4a29	Nepeta cataria	Terpenoid · `FPPS`	blast+hmm	High	36.4%	331.1
g25110.t1.2.5b2d4a29	Nepeta cataria	Terpenoid · `FPPS`	blast+hmm	High	36.4%	331.1
Pat_B17G084100.m1	Pogostemon cablin	Terpenoid · `FPPS`	blast+hmm	High	36.3%	331.0
g12423.t1	Ajuga decumbens	Terpenoid · `FPPS`	blast+hmm	High	33.7%	331.0
Dru_5G0017880.1	Dracocephalum rupestre	Terpenoid · `FPPS`	blast+hmm	High	32.8%	330.9
MESP_c39071_g3_i1_len_1514	Mentha spicata	Terpenoid · `FPPS`	blast+hmm	High	38.1%	330.9
g20264.t1	Nepeta mussinii	Terpenoid · `FPPS`	blast+hmm	High	37.4%	330.9
g20264.t1.1.5b2c7c7a	Nepeta mussinii	Terpenoid · `FPPS`	blast+hmm	High	37.4%	330.9
g20264.t1.3.5b2c7c7a	Nepeta mussinii	Terpenoid · `FPPS`	blast+hmm	High	37.4%	330.9
Mlonscaffold_6_length_375374740151900.1.v1.326	Mentha longifolia	Terpenoid · `FPPS`	blast+hmm	High	37.3%	330.8
Ms_c007g03700.1	Mosla soochowensis	Terpenoid · `FPPS`	blast+hmm	High	37.7%	330.8