LamiOmicsDB Lamiaceae Multi-Omics Database
v1 808 species · 3 phylogenies · 6,313 sequences

Pathway-family scientific record

GPPS

Geranyl diphosphate synthase family

This module includes PlantSME enzyme-family assignments and traceable candidate protein identifiers from genome-derived or transcriptome-derived protein sets.

Browse candidatesCompare speciesCSV
Stable locus plantsmeTerpenoid biosynthesis
Public candidate IDs
734
Species with candidates
80
Species with assignments
80
Source assignments
734
Gene-tree candidates
0
Motif candidates
0

Evidence profile

Available evidence layers

◆Candidate identifiers734 public species-linked identifiers can be inspected.
GTGene-tree workflow0 comparable source candidates; 0 high-confidence source calls.
MMotif-screen proxy0 motif-screen candidates; 0 with all required motif proxies.
100 kbLocal clustering proxy0 clusters across 0 species; maximum cluster size 0.

Comparative signature

Lamiaceae comparison fields

Rate delta
-0.004 · lower in Lamiaceae
Prevalence delta
0
Comparable source
PlantSME family assignments
Comparable source count
734
Public candidate count
734
Evidence mode
plantsme

Species coverage

Assignment and locus coverage by species

Source family counts and public candidate identifiers are shown in separate columns.

SpeciesEvidence stateSource countCandidate IDsExpression
Salvia splendensNepetoideae · Salvia Stable locus 2929 No matrix
Pogostemon cablinLamioideae · Pogostemon Stable locus 2727 Available
Ocimum basilicumNepetoideae · Ocimum Stable locus 2020 Available
Teucrium chamaedrysAjugoideae · Teucrium Stable locus 1919 No matrix
Elsholtzia splendensNepetoideae · Elsholtzia Stable locus 1818 No matrix
Callicarpa americanaCallicarpoideae · Callicarpa Stable locus 1616 No matrix
Salvia rosmarinusNepetoideae · Salvia Stable locus 1616 Available
Nepeta catariaNepetoideae · Nepeta Stable locus 1515 Available
Perilla frutescensNepetoideae · Perilla Stable locus 1515 No matrix
Salvia hispanicaNepetoideae · Salvia Stable locus 1515 No matrix
Stenogyne calaminthoidesLamioideae · Stenogyne Stable locus 1414 No matrix
Clinopodium barosmumNepetoideae · Clinopodium Stable locus 1212 No matrix
Ocimum tenuiflorumNepetoideae · Ocimum Stable locus 1111 No matrix
Salvia divinorumNepetoideae · Salvia Stable locus 1111 No matrix
Callicarpa nudifloraCallicarpoideae · Callicarpa Stable locus 1010 No matrix
Cornutia pyramidataPremnoideae · Cornutia Stable locus 1010 No matrix
Isodon serraNepetoideae · Isodon Stable locus 1010 No matrix
Lavandula angustifoliaNepetoideae · Lavandula Stable locus 1010 No matrix
Mosla chinensisNepetoideae · Mosla Stable locus 1010 No matrix
Salvia bowleyanaNepetoideae · Salvia Stable locus 1010 No matrix
Salvia miltiorrhizaNepetoideae · Salvia Stable locus 1010 Available
Scutellaria baicalensisScutellarioideae · Scutellaria Stable locus 1010 No matrix
Scutellaria barbataScutellarioideae · Scutellaria Stable locus 1010 No matrix
Tectona grandisTectonoideae · Tectona Stable locus 1010 Available
Clerodendrum bungeiAjugoideae · Clerodendrum Stable locus 99 No matrix
Isodon lophanthoidesNepetoideae · Isodon Stable locus 99 No matrix
Marmoritis complanataNepetoideae · Marmoritis Stable locus 99 No matrix
Mosla soochowensisNepetoideae · Mosla Stable locus 99 No matrix
Perilla citriodoraNepetoideae · Perilla Stable locus 99 No matrix
Perilla frutescens var. hirtellaNepetoideae · Perilla Stable locus 99 No matrix
Premna microphyllaPremnoideae · Premna Stable locus 99 No matrix
Rotheca myricoidesAjugoideae · Rotheca Stable locus 99 No matrix
Salvia officinalisNepetoideae · Salvia Stable locus 99 No matrix
Salvia sclareaNepetoideae · Salvia Stable locus 99 No matrix
Ajuga decumbensAjugoideae · Ajuga Stable locus 88 No matrix
Clinopodium gracileNepetoideae · Clinopodium Stable locus 88 No matrix
Drepanocaryum sewerzowiiNepetoideae · Drepanocaryum Stable locus 88 No matrix
Hyptis suaveolensNepetoideae · Hyptis Stable locus 88 No matrix
Leonurus japonicusLamioideae · Leonurus Stable locus 88 No matrix
Melissa officinalisNepetoideae · Melissa Stable locus 88 No matrix
Perovskia atriplicifoliaNepetoideae · Perovskia Stable locus 88 No matrix
Petraeovitex bambusetoriumPeronematoideae · Petraeovitex Stable locus 88 No matrix
Phlomis fruticosaLamioideae · Phlomis Stable locus 88 No matrix
Phlomoides rotataLamioideae · Phlomoides Stable locus 88 No matrix
Prunella vulgarisNepetoideae · Prunella Stable locus 88 No matrix
Thymus quinquecostatusNepetoideae · Thymus Stable locus 88 No matrix
Vitex agnus-castusViticoideae · Vitex Stable locus 88 No matrix
Agastache rugosaNepetoideae · Agastache Stable locus 77 No matrix
Collinsonia canadensisNepetoideae · Collinsonia Stable locus 77 No matrix
Congea tomentosaSymphorematoideae · Congea Stable locus 77 No matrix
Gmelina philippensisPremnoideae · Gmelina Stable locus 77 No matrix
Holmskioldia sanguineaScutellarioideae · Holmskioldia Stable locus 77 No matrix
Hyssopus officinalisNepetoideae · Hyssopus Stable locus 77 No matrix
Leonurus cardiacaLamioideae · Leonurus Stable locus 77 No matrix
Mentha spicataNepetoideae · Mentha Stable locus 77 No matrix
Monarda didymaNepetoideae · Monarda Stable locus 77 No matrix
Origanum vulgareNepetoideae · Origanum Stable locus 77 No matrix
Plectranthus barbatusNepetoideae · Plectranthus Stable locus 77 No matrix
Schizonepeta tenuifoliaNepetoideae · Schizonepeta Stable locus 77 No matrix
Stachys officinalisLamioideae · Stachys Stable locus 77 No matrix
Teucrium marumAjugoideae · Teucrium Stable locus 77 No matrix
Agastache foeniculumNepetoideae · Agastache Stable locus 66 No matrix
Ajuga reptansAjugoideae · Ajuga Stable locus 66 No matrix
Dracocephalum rupestreNepetoideae · Dracocephalum Stable locus 66 No matrix
Glechoma longitubaNepetoideae · Glechoma Stable locus 66 No matrix
Leonurus sibiricusLamioideae · Leonurus Stable locus 66 No matrix
Mentha x piperitaNepetoideae · Mentha Stable locus 66 No matrix
Nepeta mussiniiNepetoideae · Nepeta Stable locus 66 Available
Origanum majoranaNepetoideae · Origanum Stable locus 66 No matrix
Thymus vulgarisNepetoideae · Thymus Stable locus 66 No matrix
Westringia fruticosaProstantheroideae · Westringia Stable locus 66 No matrix
Ballota pseudodictamnusLamioideae · Ballota Stable locus 55 No matrix
Glechoma hederaceaNepetoideae · Glechoma Stable locus 55 No matrix
Lamium albumLamioideae · Lamium Stable locus 55 No matrix
Lycopus americanusNepetoideae · Lycopus Stable locus 55 No matrix
Marrubium vulgareLamioideae · Marrubium Stable locus 55 No matrix
Mentha longifoliaNepetoideae · Mentha Stable locus 55 Available
Prostanthera lasianthosProstantheroideae · Prostanthera Stable locus 55 No matrix
Teucrium canadenseAjugoideae · Teucrium Stable locus 55 No matrix
Leonotis leonurusLamioideae · Leonotis Stable locus 44 No matrix

Candidate records

Traceable candidate identifiers

Filter and inspect candidate identifiers for this family.

Clear
Candidate IDSpeciesPathway / familyEvidenceConfidenceIdentityHMM score
ocimum_sanctum_Ote100220750371
Ocimum tenuiflorumTerpenoid · GPPShmm Medium —169.1
PLBA_c47579_g1_i1_len_934
Plectranthus barbatusTerpenoid · GPPShmm Medium —168.8
1898.g1.t1
Ocimum basilicumTerpenoid · GPPShmm Medium —168.2
XP_042004607.1
Salvia splendensTerpenoid · GPPShmm Medium —167.2
g2678.t1
Salvia sclareaTerpenoid · GPPShmm Medium —166.8
tectona_grandis_Tg12g00580.t1
Tectona grandisTerpenoid · GPPShmm Medium —166.8
CLBU_c32688_g1_i1_len_785
Clerodendrum bungeiTerpenoid · GPPShmm Medium —166.5
Teucrium_chamaedrys__Tcha34246
Teucrium chamaedrysTerpenoid · GPPShmm Medium —166.5
Teucrium_chamaedrys__Tcha46364
Teucrium chamaedrysTerpenoid · GPPShmm Medium —166.5
evm.model.ptg000018l.25
Isodon serraTerpenoid · GPPShmm Medium —166.5
ocimum_sanctum_Ote100242920141
Ocimum tenuiflorumTerpenoid · GPPShmm Medium —166.4
PHFR_c58108_g1_i1_len_756
Phlomis fruticosaTerpenoid · GPPShmm Medium —166.0
PEAT_c18978_g1_i1_len_793
Perovskia atriplicifoliaTerpenoid · GPPShmm Medium —165.9
PRMI_c25021_g1_i1_len_977
Premna microphyllaTerpenoid · GPPShmm Medium —165.9
LAAN_c47354_g1_i1_len_942
Lavandula angustifoliaTerpenoid · GPPShmm Medium —165.4
COPY_c47448_g1_i1_len_977
Cornutia pyramidataTerpenoid · GPPShmm Medium —165.3
Es2A.G179000.t1
Elsholtzia splendensTerpenoid · GPPShmm Medium —165.2
Es2B.G179200.t1
Elsholtzia splendensTerpenoid · GPPShmm Medium —165.2
ROMY_c67684_g1_i1_len_894
Rotheca myricoidesTerpenoid · GPPShmm Medium —165.1
Pat_A24G002700.m1
Pogostemon cablinTerpenoid · GPPShmm Medium —164.9
CAame17G0029190.v1.94
Callicarpa americanaTerpenoid · GPPShmm Medium —164.7
Pat_B23G002700.m1
Pogostemon cablinTerpenoid · GPPShmm Medium —164.7
CLBU_c37712_g1_i1_len_948
Clerodendrum bungeiTerpenoid · GPPShmm Medium —164.6
KAL8532937.1
Phlomoides rotataTerpenoid · GPPShmm Medium —164.3
SAOF_c24495_g1_i1_len_722
Salvia officinalisTerpenoid · GPPShmm Medium —164.3
PRLA_c58385_g1_i1_len_899
Prostanthera lasianthosTerpenoid · GPPShmm Medium —164.0
Pat_A23G005800.m1
Pogostemon cablinTerpenoid · GPPShmm Medium —164.0
XP_047957299.1
Salvia hispanicaTerpenoid · GPPShmm Medium —163.9
PEAT_c32640_g1_i1_len_1071
Perovskia atriplicifoliaTerpenoid · GPPShmm Medium —163.6
MEOF_c24044_g1_i1_len_816
Melissa officinalisTerpenoid · GPPShmm Medium —163.5
XP_042018152.1
Salvia splendensTerpenoid · GPPShmm Medium —163.3
SAOF_c26909_g1_i2_len_673
Salvia officinalisTerpenoid · GPPShmm Medium —162.8
g38153.t1
Nepeta catariaTerpenoid · GPPShmm Medium —162.6
DRSE_g8736.t1
Drepanocaryum sewerzowiiTerpenoid · GPPShmm Medium —162.3
TECA_c11210_g1_i1_len_773
Teucrium canadenseTerpenoid · GPPShmm Medium —162.1
evm.model.chr5.1996
Prunella vulgarisTerpenoid · GPPShmm Medium —162.1
KAL1542586.1
Salvia divinorumTerpenoid · GPPShmm Medium —161.8
BAPS_c86826_g1_i1_len_898
Ballota pseudodictamnusTerpenoid · GPPShmm Medium —161.7
Smil00G0043540.1.v1.484
Salvia miltiorrhizaTerpenoid · GPPShmm Medium —161.7
g8445.t1
Nepeta catariaTerpenoid · GPPShmm Medium —161.5
MACO_g21864.t1
Marmoritis complanataTerpenoid · GPPShmm Medium —161.3
XP_042011519.1
Salvia splendensTerpenoid · GPPShmm Medium —160.8
XP_042037429.1
Salvia splendensTerpenoid · GPPShmm Medium —160.7
g24051.t1
Nepeta mussiniiTerpenoid · GPPShmm Medium —160.6
Pat_B24G002900.m1
Pogostemon cablinTerpenoid · GPPShmm Medium —160.4
Pat_B24G002900.m2
Pogostemon cablinTerpenoid · GPPShmm Medium —160.4
Dru_3G0005710.1
Dracocephalum rupestreTerpenoid · GPPShmm Medium —160.1
MAVU_c69040_g1_i1_len_877
Marrubium vulgareTerpenoid · GPPShmm Medium —160.1
Teucrium_chamaedrys__Tcha150622
Teucrium chamaedrysTerpenoid · GPPShmm Medium —160.1
Teum.07G019210.1
Teucrium marumTerpenoid · GPPShmm Medium —160.1