LamiOmicsDB Lamiaceae Multi-Omics Database
v1 808 species · 3 phylogenies · 6,313 sequences

Pathway-family scientific record

HDR_IspH

HDR / IspH enzyme-family module

This module includes PlantSME enzyme-family assignments and traceable candidate protein identifiers from genome-derived or transcriptome-derived protein sets.

Browse candidatesCompare speciesCSV
Stable locus plantsmeTerpenoid biosynthesis
Public candidate IDs
536
Species with candidates
80
Species with assignments
80
Source assignments
544
Gene-tree candidates
0
Motif candidates
0

Evidence profile

Available evidence layers

◆Candidate identifiers536 public species-linked identifiers can be inspected.
GTGene-tree workflow0 comparable source candidates; 0 high-confidence source calls.
MMotif-screen proxy0 motif-screen candidates; 0 with all required motif proxies.
100 kbLocal clustering proxy0 clusters across 0 species; maximum cluster size 0.

Comparative signature

Lamiaceae comparison fields

Rate delta
Not calculated
Prevalence delta
Not calculated
Comparable source
PlantSME family assignments
Comparable source count
544
Public candidate count
536
Evidence mode
plantsme

Species coverage

Assignment and locus coverage by species

Source family counts and public candidate identifiers are shown in separate columns.

SpeciesEvidence stateSource countCandidate IDsExpression
Pogostemon cablinLamioideae · Pogostemon Stable locus 5850 Available
Teucrium chamaedrysAjugoideae · Teucrium Stable locus 2323 No matrix
Ajuga decumbensAjugoideae · Ajuga Stable locus 2121 No matrix
Salvia divinorumNepetoideae · Salvia Stable locus 1818 No matrix
Salvia splendensNepetoideae · Salvia Stable locus 1717 No matrix
Lavandula angustifoliaNepetoideae · Lavandula Stable locus 1414 No matrix
Hyptis suaveolensNepetoideae · Hyptis Stable locus 1212 No matrix
Ocimum basilicumNepetoideae · Ocimum Stable locus 1212 Available
Teucrium marumAjugoideae · Teucrium Stable locus 1212 No matrix
Dracocephalum rupestreNepetoideae · Dracocephalum Stable locus 1111 No matrix
Hyssopus officinalisNepetoideae · Hyssopus Stable locus 1111 No matrix
Teucrium canadenseAjugoideae · Teucrium Stable locus 1111 No matrix
Plectranthus barbatusNepetoideae · Plectranthus Stable locus 1010 No matrix
Drepanocaryum sewerzowiiNepetoideae · Drepanocaryum Stable locus 99 No matrix
Elsholtzia splendensNepetoideae · Elsholtzia Stable locus 88 No matrix
Glechoma hederaceaNepetoideae · Glechoma Stable locus 88 No matrix
Mentha x piperitaNepetoideae · Mentha Stable locus 88 No matrix
Nepeta catariaNepetoideae · Nepeta Stable locus 88 Available
Stenogyne calaminthoidesLamioideae · Stenogyne Stable locus 88 No matrix
Agastache foeniculumNepetoideae · Agastache Stable locus 77 No matrix
Ajuga reptansAjugoideae · Ajuga Stable locus 77 No matrix
Prostanthera lasianthosProstantheroideae · Prostanthera Stable locus 77 No matrix
Stachys officinalisLamioideae · Stachys Stable locus 77 No matrix
Westringia fruticosaProstantheroideae · Westringia Stable locus 77 No matrix
Clinopodium gracileNepetoideae · Clinopodium Stable locus 66 No matrix
Glechoma longitubaNepetoideae · Glechoma Stable locus 66 No matrix
Marmoritis complanataNepetoideae · Marmoritis Stable locus 66 No matrix
Monarda didymaNepetoideae · Monarda Stable locus 66 No matrix
Mosla chinensisNepetoideae · Mosla Stable locus 66 No matrix
Nepeta mussiniiNepetoideae · Nepeta Stable locus 66 Available
Ocimum tenuiflorumNepetoideae · Ocimum Stable locus 66 No matrix
Phlomis fruticosaLamioideae · Phlomis Stable locus 66 No matrix
Prunella vulgarisNepetoideae · Prunella Stable locus 66 No matrix
Rotheca myricoidesAjugoideae · Rotheca Stable locus 66 No matrix
Thymus vulgarisNepetoideae · Thymus Stable locus 66 No matrix
Clerodendrum bungeiAjugoideae · Clerodendrum Stable locus 55 No matrix
Clinopodium barosmumNepetoideae · Clinopodium Stable locus 55 No matrix
Collinsonia canadensisNepetoideae · Collinsonia Stable locus 55 No matrix
Gmelina philippensisPremnoideae · Gmelina Stable locus 55 No matrix
Phlomoides rotataLamioideae · Phlomoides Stable locus 55 No matrix
Premna microphyllaPremnoideae · Premna Stable locus 55 No matrix
Salvia hispanicaNepetoideae · Salvia Stable locus 55 No matrix
Salvia miltiorrhizaNepetoideae · Salvia Stable locus 55 Available
Salvia officinalisNepetoideae · Salvia Stable locus 55 No matrix
Salvia rosmarinusNepetoideae · Salvia Stable locus 55 Available
Schizonepeta tenuifoliaNepetoideae · Schizonepeta Stable locus 55 No matrix
Agastache rugosaNepetoideae · Agastache Stable locus 44 No matrix
Callicarpa americanaCallicarpoideae · Callicarpa Stable locus 44 No matrix
Isodon lophanthoidesNepetoideae · Isodon Stable locus 44 No matrix
Isodon serraNepetoideae · Isodon Stable locus 44 No matrix
Leonotis leonurusLamioideae · Leonotis Stable locus 44 No matrix
Leonurus sibiricusLamioideae · Leonurus Stable locus 44 No matrix
Lycopus americanusNepetoideae · Lycopus Stable locus 44 No matrix
Melissa officinalisNepetoideae · Melissa Stable locus 44 No matrix
Mentha longifoliaNepetoideae · Mentha Stable locus 44 Available
Origanum majoranaNepetoideae · Origanum Stable locus 44 No matrix
Origanum vulgareNepetoideae · Origanum Stable locus 44 No matrix
Perilla frutescensNepetoideae · Perilla Stable locus 44 No matrix
Perovskia atriplicifoliaNepetoideae · Perovskia Stable locus 44 No matrix
Petraeovitex bambusetoriumPeronematoideae · Petraeovitex Stable locus 44 No matrix
Scutellaria barbataScutellarioideae · Scutellaria Stable locus 44 No matrix
Congea tomentosaSymphorematoideae · Congea Stable locus 33 No matrix
Cornutia pyramidataPremnoideae · Cornutia Stable locus 33 No matrix
Holmskioldia sanguineaScutellarioideae · Holmskioldia Stable locus 33 No matrix
Leonurus cardiacaLamioideae · Leonurus Stable locus 33 No matrix
Marrubium vulgareLamioideae · Marrubium Stable locus 33 No matrix
Mentha spicataNepetoideae · Mentha Stable locus 33 No matrix
Mosla soochowensisNepetoideae · Mosla Stable locus 33 No matrix
Salvia bowleyanaNepetoideae · Salvia Stable locus 33 No matrix
Scutellaria baicalensisScutellarioideae · Scutellaria Stable locus 33 No matrix
Thymus quinquecostatusNepetoideae · Thymus Stable locus 33 No matrix
Vitex agnus-castusViticoideae · Vitex Stable locus 33 No matrix
Ballota pseudodictamnusLamioideae · Ballota Stable locus 22 No matrix
Callicarpa nudifloraCallicarpoideae · Callicarpa Stable locus 22 No matrix
Lamium albumLamioideae · Lamium Stable locus 22 No matrix
Leonurus japonicusLamioideae · Leonurus Stable locus 22 No matrix
Perilla citriodoraNepetoideae · Perilla Stable locus 22 No matrix
Perilla frutescens var. hirtellaNepetoideae · Perilla Stable locus 22 No matrix
Salvia sclareaNepetoideae · Salvia Stable locus 22 No matrix
Tectona grandisTectonoideae · Tectona Stable locus 22 Available

Candidate records

Traceable candidate identifiers

Filter and inspect candidate identifiers for this family.

Clear
Candidate IDSpeciesPathway / familyEvidenceConfidenceIdentityHMM score
CLBU_c48637_g3_i1_len_1025
Clerodendrum bungeiTerpenoid · HDR_IspHblast+hmm High 86.3%59.5
Clgra_005614-T1
Clinopodium gracileTerpenoid · HDR_IspHblast+hmm High 74.7%59.4
XP_042008353.1
Salvia splendensTerpenoid · HDR_IspHblast+hmm High 72.0%58.8
Sch000027877
Schizonepeta tenuifoliaTerpenoid · HDR_IspHblast+hmm High 69.3%58.3
SAOF_c9914_g1_i1_len_481
Salvia officinalisTerpenoid · HDR_IspHblast+hmm High 85.0%57.9
GlLon_026335-T1
Glechoma longitubaTerpenoid · HDR_IspHblast+hmm High 47.4%57.6
MACO_g1780.t1
Marmoritis complanataTerpenoid · HDR_IspHblast+hmm High 76.6%57.4
THVU_c68365_g1_i1_len_1018
Thymus vulgarisTerpenoid · HDR_IspHblast+hmm High 86.1%57.1
DRSE_g4011.t1
Drepanocaryum sewerzowiiTerpenoid · HDR_IspHblast+hmm High 66.7%56.5
XP_042062551.1
Salvia splendensTerpenoid · HDR_IspHblast+hmm High 64.8%55.7
g612.t1
Hyssopus officinalisTerpenoid · HDR_IspHblast+hmm High 69.2%55.2
rna-gnl|WGS:QIYW|chr05_28200158_28203094.mrna1
Perilla citriodoraTerpenoid · HDR_IspHblast+hmm High 64.2%55.0
rna-gnl|WGS:QIYW|chr05_28200158_28203094.mrna1
Perilla frutescens var. hirtellaTerpenoid · HDR_IspHblast+hmm High 64.2%55.0
MEPI_c53275_g1_i1_len_1448
Mentha x piperitaTerpenoid · HDR_IspHblast+hmm High 68.7%54.8
MESP_c36183_g1_i1_len_1739
Mentha spicataTerpenoid · HDR_IspHblast+hmm High 68.9%54.8
AGFO_c22663_g1_i1_len_1500
Agastache foeniculumTerpenoid · HDR_IspHblast+hmm High 69.3%54.3
HYSU_c16259_g1_i1_len_459
Hyptis suaveolensTerpenoid · HDR_IspHblast+hmm High 88.9%54.3
AG34_scaffold8_10840T
Agastache rugosaTerpenoid · HDR_IspHblast+hmm High 69.1%54.2
Es3A.G166100.t1
Elsholtzia splendensTerpenoid · HDR_IspHblast+hmm High 62.8%53.6
PHFR_c56239_g1_i1_len_373
Phlomis fruticosaTerpenoid · HDR_IspHblast+hmm High 87.1%53.6
Es3B.G165200.t1
Elsholtzia splendensTerpenoid · HDR_IspHblast+hmm High 67.8%53.5
ORMA_c53578_g2_i3_len_1745
Origanum majoranaTerpenoid · HDR_IspHblast+hmm High 66.7%53.4
evm.model.LG20.1256
Clinopodium barosmumTerpenoid · HDR_IspHblast+hmm High 68.5%53.3
SAOF_c34116_g1_i3_len_1680
Salvia officinalisTerpenoid · HDR_IspHblast+hmm High 68.0%53.2
GWHPBJVA018095
Thymus quinquecostatusTerpenoid · HDR_IspHblast+hmm High 64.5%52.8
origanum_vulgare_125883.g128.t1
Origanum vulgareTerpenoid · HDR_IspHblast+hmm High 67.2%52.5
evm.model.ptg000001l.742
Isodon serraTerpenoid · HDR_IspHblast+hmm High 65.9%52.4
BAPS_c34782_g1_i1_len_2010
Ballota pseudodictamnusTerpenoid · HDR_IspHblast+hmm High 78.5%52.3
COPY_c73836_g1_i1_len_934
Cornutia pyramidataTerpenoid · HDR_IspHblast+hmm High 88.8%52.2
GlLon_026334-T1
Glechoma longitubaTerpenoid · HDR_IspHblast+hmm High 77.5%52.1
AG34_scaffold8_10830T
Agastache rugosaTerpenoid · HDR_IspHblast+hmm High 62.2%52.0
MEOF_c4865_g1_i2_len_790
Melissa officinalisTerpenoid · HDR_IspHblast+hmm High 76.0%51.3
STOF_c6166_g1_i1_len_374
Stachys officinalisTerpenoid · HDR_IspHblast+hmm High 89.5%50.9
1717.g15.t1
Ocimum basilicumTerpenoid · HDR_IspHblast+hmm High 59.4%50.3
LAAL_c45933_g1_i1_len_1173
Lamium albumTerpenoid · HDR_IspHblast+hmm High 77.5%49.9
LELE_c19896_g1_i1_len_1145
Leonotis leonurusTerpenoid · HDR_IspHblast+hmm High 80.3%49.6
Teucrium_chamaedrys__Tcha90115
Teucrium chamaedrysTerpenoid · HDR_IspHblast+hmm High 75.7%49.4
Teucrium_chamaedrys__Tcha70832
Teucrium chamaedrysTerpenoid · HDR_IspHblast+hmm High 82.2%49.2
VIAG_c90438_g1_i1_len_677
Vitex agnus-castusTerpenoid · HDR_IspHblast+hmm High 86.7%48.9
GMPH_c20944_g2_i1_len_577
Gmelina philippensisTerpenoid · HDR_IspHblast+hmm High 88.2%48.1
Sch000027944
Schizonepeta tenuifoliaTerpenoid · HDR_IspHblast+hmm High 63.1%47.0
31:ILLG4G288.84m1
Isodon lophanthoidesTerpenoid · HDR_IspHblast+hmm High 57.2%45.9
Teum.05G023280.2
Teucrium marumTerpenoid · HDR_IspHblast+hmm High 71.7%45.9
LELE_c16211_g1_i1_len_264
Leonotis leonurusTerpenoid · HDR_IspHblast+hmm High 87.2%45.3
Dru_5G0032550.2
Dracocephalum rupestreTerpenoid · HDR_IspHblast+hmm High 65.4%44.7
PEAT_c29112_g1_i1_len_1087
Perovskia atriplicifoliaTerpenoid · HDR_IspHblast+hmm High 67.0%44.3
WEFR_c11320_g1_i1_len_613
Westringia fruticosaTerpenoid · HDR_IspHblast+hmm High 86.8%44.2
g608.t1.2.5b43bdc4
Hyssopus officinalisTerpenoid · HDR_IspHblast+hmm High 67.5%43.9
g608.t1.3.5b43bdc4
Hyssopus officinalisTerpenoid · HDR_IspHblast+hmm High 67.5%43.9
LAAN_c46083_g1_i1_len_609
Lavandula angustifoliaTerpenoid · HDR_IspHblast+hmm High 85.6%43.0