LamiOmicsDB Lamiaceae Multi-Omics Database
v1 808 species · 3 phylogenies · 6,313 sequences

Pathway-family scientific record

HDR_IspH

HDR / IspH enzyme-family module

This module includes PlantSME enzyme-family assignments and traceable candidate protein identifiers from genome-derived or transcriptome-derived protein sets.

Browse candidatesCompare speciesCSV
Stable locus plantsmeTerpenoid biosynthesis
Public candidate IDs
536
Species with candidates
80
Species with assignments
80
Source assignments
544
Gene-tree candidates
0
Motif candidates
0

Evidence profile

Available evidence layers

◆Candidate identifiers536 public species-linked identifiers can be inspected.
GTGene-tree workflow0 comparable source candidates; 0 high-confidence source calls.
MMotif-screen proxy0 motif-screen candidates; 0 with all required motif proxies.
100 kbLocal clustering proxy0 clusters across 0 species; maximum cluster size 0.

Comparative signature

Lamiaceae comparison fields

Rate delta
Not calculated
Prevalence delta
Not calculated
Comparable source
PlantSME family assignments
Comparable source count
544
Public candidate count
536
Evidence mode
plantsme

Species coverage

Assignment and locus coverage by species

Source family counts and public candidate identifiers are shown in separate columns.

SpeciesEvidence stateSource countCandidate IDsExpression
Pogostemon cablinLamioideae · Pogostemon Stable locus 5850 Available
Teucrium chamaedrysAjugoideae · Teucrium Stable locus 2323 No matrix
Ajuga decumbensAjugoideae · Ajuga Stable locus 2121 No matrix
Salvia divinorumNepetoideae · Salvia Stable locus 1818 No matrix
Salvia splendensNepetoideae · Salvia Stable locus 1717 No matrix
Lavandula angustifoliaNepetoideae · Lavandula Stable locus 1414 No matrix
Hyptis suaveolensNepetoideae · Hyptis Stable locus 1212 No matrix
Ocimum basilicumNepetoideae · Ocimum Stable locus 1212 Available
Teucrium marumAjugoideae · Teucrium Stable locus 1212 No matrix
Dracocephalum rupestreNepetoideae · Dracocephalum Stable locus 1111 No matrix
Hyssopus officinalisNepetoideae · Hyssopus Stable locus 1111 No matrix
Teucrium canadenseAjugoideae · Teucrium Stable locus 1111 No matrix
Plectranthus barbatusNepetoideae · Plectranthus Stable locus 1010 No matrix
Drepanocaryum sewerzowiiNepetoideae · Drepanocaryum Stable locus 99 No matrix
Elsholtzia splendensNepetoideae · Elsholtzia Stable locus 88 No matrix
Glechoma hederaceaNepetoideae · Glechoma Stable locus 88 No matrix
Mentha x piperitaNepetoideae · Mentha Stable locus 88 No matrix
Nepeta catariaNepetoideae · Nepeta Stable locus 88 Available
Stenogyne calaminthoidesLamioideae · Stenogyne Stable locus 88 No matrix
Agastache foeniculumNepetoideae · Agastache Stable locus 77 No matrix
Ajuga reptansAjugoideae · Ajuga Stable locus 77 No matrix
Prostanthera lasianthosProstantheroideae · Prostanthera Stable locus 77 No matrix
Stachys officinalisLamioideae · Stachys Stable locus 77 No matrix
Westringia fruticosaProstantheroideae · Westringia Stable locus 77 No matrix
Clinopodium gracileNepetoideae · Clinopodium Stable locus 66 No matrix
Glechoma longitubaNepetoideae · Glechoma Stable locus 66 No matrix
Marmoritis complanataNepetoideae · Marmoritis Stable locus 66 No matrix
Monarda didymaNepetoideae · Monarda Stable locus 66 No matrix
Mosla chinensisNepetoideae · Mosla Stable locus 66 No matrix
Nepeta mussiniiNepetoideae · Nepeta Stable locus 66 Available
Ocimum tenuiflorumNepetoideae · Ocimum Stable locus 66 No matrix
Phlomis fruticosaLamioideae · Phlomis Stable locus 66 No matrix
Prunella vulgarisNepetoideae · Prunella Stable locus 66 No matrix
Rotheca myricoidesAjugoideae · Rotheca Stable locus 66 No matrix
Thymus vulgarisNepetoideae · Thymus Stable locus 66 No matrix
Clerodendrum bungeiAjugoideae · Clerodendrum Stable locus 55 No matrix
Clinopodium barosmumNepetoideae · Clinopodium Stable locus 55 No matrix
Collinsonia canadensisNepetoideae · Collinsonia Stable locus 55 No matrix
Gmelina philippensisPremnoideae · Gmelina Stable locus 55 No matrix
Phlomoides rotataLamioideae · Phlomoides Stable locus 55 No matrix
Premna microphyllaPremnoideae · Premna Stable locus 55 No matrix
Salvia hispanicaNepetoideae · Salvia Stable locus 55 No matrix
Salvia miltiorrhizaNepetoideae · Salvia Stable locus 55 Available
Salvia officinalisNepetoideae · Salvia Stable locus 55 No matrix
Salvia rosmarinusNepetoideae · Salvia Stable locus 55 Available
Schizonepeta tenuifoliaNepetoideae · Schizonepeta Stable locus 55 No matrix
Agastache rugosaNepetoideae · Agastache Stable locus 44 No matrix
Callicarpa americanaCallicarpoideae · Callicarpa Stable locus 44 No matrix
Isodon lophanthoidesNepetoideae · Isodon Stable locus 44 No matrix
Isodon serraNepetoideae · Isodon Stable locus 44 No matrix
Leonotis leonurusLamioideae · Leonotis Stable locus 44 No matrix
Leonurus sibiricusLamioideae · Leonurus Stable locus 44 No matrix
Lycopus americanusNepetoideae · Lycopus Stable locus 44 No matrix
Melissa officinalisNepetoideae · Melissa Stable locus 44 No matrix
Mentha longifoliaNepetoideae · Mentha Stable locus 44 Available
Origanum majoranaNepetoideae · Origanum Stable locus 44 No matrix
Origanum vulgareNepetoideae · Origanum Stable locus 44 No matrix
Perilla frutescensNepetoideae · Perilla Stable locus 44 No matrix
Perovskia atriplicifoliaNepetoideae · Perovskia Stable locus 44 No matrix
Petraeovitex bambusetoriumPeronematoideae · Petraeovitex Stable locus 44 No matrix
Scutellaria barbataScutellarioideae · Scutellaria Stable locus 44 No matrix
Congea tomentosaSymphorematoideae · Congea Stable locus 33 No matrix
Cornutia pyramidataPremnoideae · Cornutia Stable locus 33 No matrix
Holmskioldia sanguineaScutellarioideae · Holmskioldia Stable locus 33 No matrix
Leonurus cardiacaLamioideae · Leonurus Stable locus 33 No matrix
Marrubium vulgareLamioideae · Marrubium Stable locus 33 No matrix
Mentha spicataNepetoideae · Mentha Stable locus 33 No matrix
Mosla soochowensisNepetoideae · Mosla Stable locus 33 No matrix
Salvia bowleyanaNepetoideae · Salvia Stable locus 33 No matrix
Scutellaria baicalensisScutellarioideae · Scutellaria Stable locus 33 No matrix
Thymus quinquecostatusNepetoideae · Thymus Stable locus 33 No matrix
Vitex agnus-castusViticoideae · Vitex Stable locus 33 No matrix
Ballota pseudodictamnusLamioideae · Ballota Stable locus 22 No matrix
Callicarpa nudifloraCallicarpoideae · Callicarpa Stable locus 22 No matrix
Lamium albumLamioideae · Lamium Stable locus 22 No matrix
Leonurus japonicusLamioideae · Leonurus Stable locus 22 No matrix
Perilla citriodoraNepetoideae · Perilla Stable locus 22 No matrix
Perilla frutescens var. hirtellaNepetoideae · Perilla Stable locus 22 No matrix
Salvia sclareaNepetoideae · Salvia Stable locus 22 No matrix
Tectona grandisTectonoideae · Tectona Stable locus 22 Available

Candidate records

Traceable candidate identifiers

Filter and inspect candidate identifiers for this family.

Clear
Candidate IDSpeciesPathway / familyEvidenceConfidenceIdentityHMM score
MAVU_c39036_g1_i1_len_264
Marrubium vulgareTerpenoid · HDR_IspHblast+hmm High 80.5%19.6
CLBU_c48637_g1_i1_len_295
Clerodendrum bungeiTerpenoid · HDR_IspHblast+hmm High 87.5%19.5
LAAN_c28451_g1_i1_len_494
Lavandula angustifoliaTerpenoid · HDR_IspHblast+hmm High 72.3%19.3
TECA_c36605_g1_i1_len_306
Teucrium canadenseTerpenoid · HDR_IspHblast+hmm High 86.3%19.2
HYSU_c42156_g1_i1_len_349
Hyptis suaveolensTerpenoid · HDR_IspHblast+hmm High 75.0%18.1
PEBA_c105374_g1_i1_len_262
Petraeovitex bambusetoriumTerpenoid · HDR_IspHblast+hmm High 80.5%17.7
GLHE_c44030_g1_i1_len_253
Glechoma hederaceaTerpenoid · HDR_IspHblast+hmm High 84.0%17.6
GMPH_c60313_g1_i1_len_675
Gmelina philippensisTerpenoid · HDR_IspHblast+hmm High 78.9%17.5
MEPI_c32380_g1_i1_len_620
Mentha x piperitaTerpenoid · HDR_IspHblast+hmm High 63.6%17.5
STOF_c72825_g1_i1_len_501
Stachys officinalisTerpenoid · HDR_IspHblast+hmm High 76.0%17.4
TECA_c41506_g1_i1_len_764
Teucrium canadenseTerpenoid · HDR_IspHblast+hmm High 78.3%17.3
PLBA_c57979_g1_i1_len_433
Plectranthus barbatusTerpenoid · HDR_IspHblast+hmm High 79.2%17.1
PLBA_c32366_g1_i1_len_286
Plectranthus barbatusTerpenoid · HDR_IspHblast+hmm High 82.1%17.0
LAAN_c112255_g1_i1_len_735
Lavandula angustifoliaTerpenoid · HDR_IspHblast+hmm High 62.8%16.9
LYAM_c539_g1_i1_len_639
Lycopus americanusTerpenoid · HDR_IspHblast+hmm High 75.2%16.2
g42078.t1
Nepeta catariaTerpenoid · HDR_IspHblast+hmm High 57.1%16.2
PRMI_c79682_g1_i1_len_646
Premna microphyllaTerpenoid · HDR_IspHblast+hmm High 72.0%16.0
evm.model.chr6.1630
Prunella vulgarisTerpenoid · HDR_IspHblast+hmm Medium 77.3%89.8
ocimum_sanctum_Ote100239910291
Ocimum tenuiflorumTerpenoid · HDR_IspHblast+hmm Medium 80.9%89.0
ocimum_sanctum_Ote100239910151
Ocimum tenuiflorumTerpenoid · HDR_IspHblast+hmm Medium 69.1%88.6
Mlonscaffold_11_length_299437840025400.1.v1.326
Mentha longifoliaTerpenoid · HDR_IspHblast+hmm Medium 78.1%86.6
Mlonscaffold_11_length_299437840025370.1.v1.326
Mentha longifoliaTerpenoid · HDR_IspHblast+hmm Medium 70.3%58.1
HYSU_c26593_g3_i1_len_691
Hyptis suaveolensTerpenoid · HDR_IspHblast+hmm Medium 72.9%16.0
MEPI_c61279_g2_i2_len_705
Mentha x piperitaTerpenoid · HDR_IspHblast+hmm Medium 68.8%16.0
HYSU_c26593_g2_i1_len_288
Hyptis suaveolensTerpenoid · HDR_IspHblast+hmm Medium 80.2%15.9
PHFR_c61856_g1_i1_len_523
Phlomis fruticosaTerpenoid · HDR_IspHblast+hmm Medium 69.8%15.9
714.g93.t1
Ocimum basilicumTerpenoid · HDR_IspHblast+hmm Medium 65.2%15.2
HYSU_c26593_g1_i1_len_690
Hyptis suaveolensTerpenoid · HDR_IspHblast+hmm Medium 69.2%14.9
origanum_vulgare_125883.g129.t1
Origanum vulgareTerpenoid · HDR_IspHblast+hmm Medium 50.0%14.9
AGFO_c16888_g1_i1_len_487
Agastache foeniculumTerpenoid · HDR_IspHblast+hmm Medium 57.0%14.5
XP_041997372.1
Salvia splendensTerpenoid · HDR_IspHblast+hmm Medium 70.3%13.8
MEOF_c54813_g1_i1_len_669
Melissa officinalisTerpenoid · HDR_IspHblast+hmm Medium 59.6%13.2
GlLon_026333-T1
Glechoma longitubaTerpenoid · HDR_IspHblast+hmm Medium 62.4%12.7
g19835.t1
Nepeta catariaTerpenoid · HDR_IspHblast+hmm Medium 37.8%12.2
MODI_c13135_g1_i1_len_447
Monarda didymaTerpenoid · HDR_IspHblast+hmm Medium 73.4%11.9
g20608.t1
Nepeta mussiniiTerpenoid · HDR_IspHblast+hmm Medium 70.5%11.5
Clgra_005616-T1
Clinopodium gracileTerpenoid · HDR_IspHblast+hmm Medium 75.3%11.1
382764.g24.t1
Ocimum basilicumTerpenoid · HDR_IspHblast Medium 56.8%—
AGFO_c27426_g1_i1_len_3870
Agastache foeniculumTerpenoid · HDR_IspHblast Medium 37.2%—
AGFO_c36330_g1_i1_len_353
Agastache foeniculumTerpenoid · HDR_IspHblast Medium 62.9%—
AGFO_c79852_g1_i1_len_277
Agastache foeniculumTerpenoid · HDR_IspHblast Medium 83.7%—
AJRE_c23517_g1_i2_len_307
Ajuga reptansTerpenoid · HDR_IspHblast Medium 41.8%—
AJRE_c3601_g1_i1_len_277
Ajuga reptansTerpenoid · HDR_IspHblast Medium 87.0%—
AJRE_c49381_g1_i1_len_520
Ajuga reptansTerpenoid · HDR_IspHblast Medium 46.4%—
AJRE_c65569_g1_i1_len_352
Ajuga reptansTerpenoid · HDR_IspHblast Medium 32.9%—
AJRE_c87126_g1_i1_len_283
Ajuga reptansTerpenoid · HDR_IspHblast Medium 85.5%—
CLBU_c51402_g1_i1_len_3237
Clerodendrum bungeiTerpenoid · HDR_IspHblast Medium 34.5%—
CLBU_c94954_g1_i1_len_526
Clerodendrum bungeiTerpenoid · HDR_IspHblast Medium 35.4%—
COCA_c70937_g4_i1_len_356
Collinsonia canadensisTerpenoid · HDR_IspHblast Medium 53.2%—
COCA_c74532_g2_i1_len_5257
Collinsonia canadensisTerpenoid · HDR_IspHblast Medium 37.5%—