LamiOmicsDB Lamiaceae Multi-Omics Database
v1 808 species · 3 phylogenies · 6,313 sequences

Pathway-family scientific record

HDS_IspG

HDS / IspG enzyme-family module

This module includes PlantSME enzyme-family assignments and traceable candidate protein identifiers from genome-derived or transcriptome-derived protein sets.

Browse candidatesCompare speciesCSV
Stable locus plantsmeTerpenoid biosynthesis
Public candidate IDs
2,094
Species with candidates
80
Species with assignments
80
Source assignments
2,185
Gene-tree candidates
0
Motif candidates
0

Evidence profile

Available evidence layers

◆Candidate identifiers2,094 public species-linked identifiers can be inspected.
GTGene-tree workflow0 comparable source candidates; 0 high-confidence source calls.
MMotif-screen proxy0 motif-screen candidates; 0 with all required motif proxies.
100 kbLocal clustering proxy0 clusters across 0 species; maximum cluster size 0.

Comparative signature

Lamiaceae comparison fields

Rate delta
Not calculated
Prevalence delta
Not calculated
Comparable source
PlantSME family assignments
Comparable source count
2,185
Public candidate count
2,094
Evidence mode
plantsme

Species coverage

Assignment and locus coverage by species

Source family counts and public candidate identifiers are shown in separate columns.

SpeciesEvidence stateSource countCandidate IDsExpression
Pogostemon cablinLamioideae · Pogostemon Stable locus 8450 Available
Teucrium chamaedrysAjugoideae · Teucrium Stable locus 8350 No matrix
Ocimum basilicumNepetoideae · Ocimum Stable locus 7250 Available
Salvia splendensNepetoideae · Salvia Stable locus 5250 No matrix
Elsholtzia splendensNepetoideae · Elsholtzia Stable locus 4949 No matrix
Nepeta catariaNepetoideae · Nepeta Stable locus 4545 Available
Perilla frutescensNepetoideae · Perilla Stable locus 4343 No matrix
Salvia rosmarinusNepetoideae · Salvia Stable locus 4141 Available
Stenogyne calaminthoidesLamioideae · Stenogyne Stable locus 3939 No matrix
Clinopodium barosmumNepetoideae · Clinopodium Stable locus 3535 No matrix
Phlomoides rotataLamioideae · Phlomoides Stable locus 3535 No matrix
Nepeta mussiniiNepetoideae · Nepeta Stable locus 3333 Available
Teucrium marumAjugoideae · Teucrium Stable locus 3232 No matrix
Callicarpa americanaCallicarpoideae · Callicarpa Stable locus 3131 No matrix
Tectona grandisTectonoideae · Tectona Stable locus 3131 Available
Hyssopus officinalisNepetoideae · Hyssopus Stable locus 3030 No matrix
Ocimum tenuiflorumNepetoideae · Ocimum Stable locus 3030 No matrix
Salvia divinorumNepetoideae · Salvia Stable locus 3030 No matrix
Stachys officinalisLamioideae · Stachys Stable locus 2929 No matrix
Teucrium canadenseAjugoideae · Teucrium Stable locus 2929 No matrix
Clerodendrum bungeiAjugoideae · Clerodendrum Stable locus 2828 No matrix
Lycopus americanusNepetoideae · Lycopus Stable locus 2828 No matrix
Prunella vulgarisNepetoideae · Prunella Stable locus 2828 No matrix
Rotheca myricoidesAjugoideae · Rotheca Stable locus 2828 No matrix
Agastache foeniculumNepetoideae · Agastache Stable locus 2626 No matrix
Glechoma longitubaNepetoideae · Glechoma Stable locus 2626 No matrix
Marmoritis complanataNepetoideae · Marmoritis Stable locus 2626 No matrix
Mosla soochowensisNepetoideae · Mosla Stable locus 2626 No matrix
Petraeovitex bambusetoriumPeronematoideae · Petraeovitex Stable locus 2626 No matrix
Salvia bowleyanaNepetoideae · Salvia Stable locus 2626 No matrix
Scutellaria baicalensisScutellarioideae · Scutellaria Stable locus 2626 No matrix
Agastache rugosaNepetoideae · Agastache Stable locus 2525 No matrix
Ajuga decumbensAjugoideae · Ajuga Stable locus 2525 No matrix
Cornutia pyramidataPremnoideae · Cornutia Stable locus 2525 No matrix
Glechoma hederaceaNepetoideae · Glechoma Stable locus 2525 No matrix
Scutellaria barbataScutellarioideae · Scutellaria Stable locus 2525 No matrix
Dracocephalum rupestreNepetoideae · Dracocephalum Stable locus 2424 No matrix
Holmskioldia sanguineaScutellarioideae · Holmskioldia Stable locus 2424 No matrix
Mosla chinensisNepetoideae · Mosla Stable locus 2424 No matrix
Origanum vulgareNepetoideae · Origanum Stable locus 2424 No matrix
Salvia hispanicaNepetoideae · Salvia Stable locus 2424 No matrix
Salvia miltiorrhizaNepetoideae · Salvia Stable locus 2424 Available
Drepanocaryum sewerzowiiNepetoideae · Drepanocaryum Stable locus 2323 No matrix
Gmelina philippensisPremnoideae · Gmelina Stable locus 2323 No matrix
Hyptis suaveolensNepetoideae · Hyptis Stable locus 2323 No matrix
Melissa officinalisNepetoideae · Melissa Stable locus 2323 No matrix
Thymus quinquecostatusNepetoideae · Thymus Stable locus 2323 No matrix
Vitex agnus-castusViticoideae · Vitex Stable locus 2323 No matrix
Collinsonia canadensisNepetoideae · Collinsonia Stable locus 2222 No matrix
Leonurus cardiacaLamioideae · Leonurus Stable locus 2222 No matrix
Marrubium vulgareLamioideae · Marrubium Stable locus 2222 No matrix
Mentha x piperitaNepetoideae · Mentha Stable locus 2222 No matrix
Perilla citriodoraNepetoideae · Perilla Stable locus 2222 No matrix
Perilla frutescens var. hirtellaNepetoideae · Perilla Stable locus 2222 No matrix
Plectranthus barbatusNepetoideae · Plectranthus Stable locus 2222 No matrix
Clinopodium gracileNepetoideae · Clinopodium Stable locus 2121 No matrix
Isodon lophanthoidesNepetoideae · Isodon Stable locus 2121 No matrix
Isodon serraNepetoideae · Isodon Stable locus 2121 No matrix
Lavandula angustifoliaNepetoideae · Lavandula Stable locus 2121 No matrix
Mentha longifoliaNepetoideae · Mentha Stable locus 2121 Available
Prostanthera lasianthosProstantheroideae · Prostanthera Stable locus 2121 No matrix
Thymus vulgarisNepetoideae · Thymus Stable locus 2121 No matrix
Callicarpa nudifloraCallicarpoideae · Callicarpa Stable locus 2020 No matrix
Lamium albumLamioideae · Lamium Stable locus 2020 No matrix
Phlomis fruticosaLamioideae · Phlomis Stable locus 2020 No matrix
Westringia fruticosaProstantheroideae · Westringia Stable locus 2020 No matrix
Ballota pseudodictamnusLamioideae · Ballota Stable locus 1919 No matrix
Monarda didymaNepetoideae · Monarda Stable locus 1919 No matrix
Perovskia atriplicifoliaNepetoideae · Perovskia Stable locus 1919 No matrix
Salvia officinalisNepetoideae · Salvia Stable locus 1919 No matrix
Schizonepeta tenuifoliaNepetoideae · Schizonepeta Stable locus 1919 No matrix
Ajuga reptansAjugoideae · Ajuga Stable locus 1818 No matrix
Congea tomentosaSymphorematoideae · Congea Stable locus 1818 No matrix
Leonotis leonurusLamioideae · Leonotis Stable locus 1818 No matrix
Leonurus japonicusLamioideae · Leonurus Stable locus 1818 No matrix
Premna microphyllaPremnoideae · Premna Stable locus 1818 No matrix
Salvia sclareaNepetoideae · Salvia Stable locus 1818 No matrix
Mentha spicataNepetoideae · Mentha Stable locus 1717 No matrix
Leonurus sibiricusLamioideae · Leonurus Stable locus 1616 No matrix
Origanum majoranaNepetoideae · Origanum Stable locus 1414 No matrix

Candidate records

Traceable candidate identifiers

Filter and inspect candidate identifiers for this family.

Clear
Candidate IDSpeciesPathway / familyEvidenceConfidenceIdentityHMM score
Roff10490064330
Salvia rosmarinusTerpenoid · HDS_IspGblast+hmm High 85.7%93.6
TECA_c31094_g1_i1_len_2797
Teucrium canadenseTerpenoid · HDS_IspGblast+hmm High 88.7%93.6
AGFO_c22974_g1_i1_len_2916
Agastache foeniculumTerpenoid · HDS_IspGblast+hmm High 87.6%93.5
COTO_c42004_g2_i2_len_2570
Congea tomentosaTerpenoid · HDS_IspGblast+hmm High 87.6%93.5
Dru_1G0010580.1
Dracocephalum rupestreTerpenoid · HDS_IspGblast+hmm High 87.4%93.5
PEAT_c33252_g1_i1_len_2914
Perovskia atriplicifoliaTerpenoid · HDS_IspGblast+hmm High 87.2%93.5
Roff24960328650
Salvia rosmarinusTerpenoid · HDS_IspGblast+hmm High 87.1%93.5
Roff24960328660
Salvia rosmarinusTerpenoid · HDS_IspGblast+hmm High 87.1%93.5
SAOF_c33193_g1_i1_len_2812
Salvia officinalisTerpenoid · HDS_IspGblast+hmm High 87.3%93.5
g13323.t1
Salvia sclareaTerpenoid · HDS_IspGblast+hmm High 87.1%93.5
g13714.t1
Hyssopus officinalisTerpenoid · HDS_IspGblast+hmm High 86.4%93.5
AG34_scaffold9_14180T
Agastache rugosaTerpenoid · HDS_IspGblast+hmm High 87.1%93.4
DRSE_g11939.t1
Drepanocaryum sewerzowiiTerpenoid · HDS_IspGblast+hmm High 87.5%93.4
DRSE_g11939.t2
Drepanocaryum sewerzowiiTerpenoid · HDS_IspGblast+hmm High 87.2%93.4
GLHE_c67183_g1_i1_len_2740
Glechoma hederaceaTerpenoid · HDS_IspGblast+hmm High 86.5%93.4
GMPH_c33606_g1_i1_len_2404
Gmelina philippensisTerpenoid · HDS_IspGblast+hmm High 88.7%93.4
GlLon_028590-T1
Glechoma longitubaTerpenoid · HDS_IspGblast+hmm High 86.4%93.4
LYAM_c89911_g1_i1_len_2828
Lycopus americanusTerpenoid · HDS_IspGblast+hmm High 86.8%93.4
MACO_g7080.t1
Marmoritis complanataTerpenoid · HDS_IspGblast+hmm High 87.3%93.4
MEOF_c13188_g2_i1_len_2711
Melissa officinalisTerpenoid · HDS_IspGblast+hmm High 86.8%93.4
Pat_A08G100500.m1
Pogostemon cablinTerpenoid · HDS_IspGblast+hmm High 86.0%93.4
Pat_A08G100500.m2
Pogostemon cablinTerpenoid · HDS_IspGblast+hmm High 86.0%93.4
Pat_A08G100500.m3
Pogostemon cablinTerpenoid · HDS_IspGblast+hmm High 86.0%93.4
Sbow06G0038680.1
Salvia bowleyanaTerpenoid · HDS_IspGblast+hmm High 87.1%93.4
Smil02G0007820.1.v1.484
Salvia miltiorrhizaTerpenoid · HDS_IspGblast+hmm High 86.0%93.4
Smil02G0007910.1.v1.484
Salvia miltiorrhizaTerpenoid · HDS_IspGblast+hmm High 87.1%93.4
WEFR_c8078_g1_i1_len_2883
Westringia fruticosaTerpenoid · HDS_IspGblast+hmm High 88.1%93.4
g16756.t1
Nepeta catariaTerpenoid · HDS_IspGblast+hmm High 87.1%93.4
g2124.t1
Nepeta mussiniiTerpenoid · HDS_IspGblast+hmm High 87.2%93.4
g3666.t1
Nepeta catariaTerpenoid · HDS_IspGblast+hmm High 87.2%93.4
PHFR_c74359_g1_i1_len_2746
Phlomis fruticosaTerpenoid · HDS_IspGblast+hmm High 86.9%93.3
PRMI_c37792_g2_i1_len_2718
Premna microphyllaTerpenoid · HDS_IspGblast+hmm High 89.8%93.3
Stenogyne_calaminthoides__EVM_prediction_HiC_scaffold_36.860.mRNA1
Stenogyne calaminthoidesTerpenoid · HDS_IspGblast+hmm High 86.7%93.3
evm.model.Chr11.1487
Callicarpa nudifloraTerpenoid · HDS_IspGblast+hmm High 88.1%93.3
CLBU_c51901_g1_i2_len_2806
Clerodendrum bungeiTerpenoid · HDS_IspGblast+hmm High 87.3%93.2
COPY_c81172_g1_i2_len_2738
Cornutia pyramidataTerpenoid · HDS_IspGblast+hmm High 87.3%93.2
CAame08G0032050.v1.94
Callicarpa americanaTerpenoid · HDS_IspGblast+hmm High 88.3%93.1
KAL1544142.1
Salvia divinorumTerpenoid · HDS_IspGblast+hmm High 84.1%93.1
PRLA_c69752_g2_i1_len_2648
Prostanthera lasianthosTerpenoid · HDS_IspGblast+hmm High 88.1%93.1
Teum.12G020210.1
Teucrium marumTerpenoid · HDS_IspGblast+hmm High 87.8%92.9
Teucrium_chamaedrys__Tcha52880
Teucrium chamaedrysTerpenoid · HDS_IspGblast+hmm High 89.3%92.8
Teucrium_chamaedrys__Tcha147371
Teucrium chamaedrysTerpenoid · HDS_IspGblast+hmm High 89.2%92.7
tectona_grandis_Tg14g03820.t1
Tectona grandisTerpenoid · HDS_IspGblast+hmm High 86.9%92.6
ocimum_sanctum_Ote100203730101
Ocimum tenuiflorumTerpenoid · HDS_IspGblast+hmm High 87.3%91.7
AG34_scaffold2_31780T
Agastache rugosaTerpenoid · HDS_IspGblast+hmm High 87.6%91.6
GWHPBJVA008595
Thymus quinquecostatusTerpenoid · HDS_IspGblast+hmm High 86.7%91.5
GWHPBJVA017472
Thymus quinquecostatusTerpenoid · HDS_IspGblast+hmm High 83.6%91.5
GWHPBJVA017794
Thymus quinquecostatusTerpenoid · HDS_IspGblast+hmm High 83.6%91.5
g26695.t1.5.5b2c7c7e
Nepeta mussiniiTerpenoid · HDS_IspGblast+hmm High 85.0%91.4
g9463.t1.1.5b2d4a2f
Nepeta catariaTerpenoid · HDS_IspGblast+hmm High 86.1%91.4