LamiOmicsDB Lamiaceae Multi-Omics Database
v1 808 species · 3 phylogenies · 6,313 sequences

Pathway-family scientific record

HDS_IspG

HDS / IspG enzyme-family module

This module includes PlantSME enzyme-family assignments and traceable candidate protein identifiers from genome-derived or transcriptome-derived protein sets.

Browse candidatesCompare speciesCSV
Stable locus plantsmeTerpenoid biosynthesis
Public candidate IDs
2,094
Species with candidates
80
Species with assignments
80
Source assignments
2,185
Gene-tree candidates
0
Motif candidates
0

Evidence profile

Available evidence layers

◆Candidate identifiers2,094 public species-linked identifiers can be inspected.
GTGene-tree workflow0 comparable source candidates; 0 high-confidence source calls.
MMotif-screen proxy0 motif-screen candidates; 0 with all required motif proxies.
100 kbLocal clustering proxy0 clusters across 0 species; maximum cluster size 0.

Comparative signature

Lamiaceae comparison fields

Rate delta
Not calculated
Prevalence delta
Not calculated
Comparable source
PlantSME family assignments
Comparable source count
2,185
Public candidate count
2,094
Evidence mode
plantsme

Species coverage

Assignment and locus coverage by species

Source family counts and public candidate identifiers are shown in separate columns.

SpeciesEvidence stateSource countCandidate IDsExpression
Pogostemon cablinLamioideae · Pogostemon Stable locus 8450 Available
Teucrium chamaedrysAjugoideae · Teucrium Stable locus 8350 No matrix
Ocimum basilicumNepetoideae · Ocimum Stable locus 7250 Available
Salvia splendensNepetoideae · Salvia Stable locus 5250 No matrix
Elsholtzia splendensNepetoideae · Elsholtzia Stable locus 4949 No matrix
Nepeta catariaNepetoideae · Nepeta Stable locus 4545 Available
Perilla frutescensNepetoideae · Perilla Stable locus 4343 No matrix
Salvia rosmarinusNepetoideae · Salvia Stable locus 4141 Available
Stenogyne calaminthoidesLamioideae · Stenogyne Stable locus 3939 No matrix
Clinopodium barosmumNepetoideae · Clinopodium Stable locus 3535 No matrix
Phlomoides rotataLamioideae · Phlomoides Stable locus 3535 No matrix
Nepeta mussiniiNepetoideae · Nepeta Stable locus 3333 Available
Teucrium marumAjugoideae · Teucrium Stable locus 3232 No matrix
Callicarpa americanaCallicarpoideae · Callicarpa Stable locus 3131 No matrix
Tectona grandisTectonoideae · Tectona Stable locus 3131 Available
Hyssopus officinalisNepetoideae · Hyssopus Stable locus 3030 No matrix
Ocimum tenuiflorumNepetoideae · Ocimum Stable locus 3030 No matrix
Salvia divinorumNepetoideae · Salvia Stable locus 3030 No matrix
Stachys officinalisLamioideae · Stachys Stable locus 2929 No matrix
Teucrium canadenseAjugoideae · Teucrium Stable locus 2929 No matrix
Clerodendrum bungeiAjugoideae · Clerodendrum Stable locus 2828 No matrix
Lycopus americanusNepetoideae · Lycopus Stable locus 2828 No matrix
Prunella vulgarisNepetoideae · Prunella Stable locus 2828 No matrix
Rotheca myricoidesAjugoideae · Rotheca Stable locus 2828 No matrix
Agastache foeniculumNepetoideae · Agastache Stable locus 2626 No matrix
Glechoma longitubaNepetoideae · Glechoma Stable locus 2626 No matrix
Marmoritis complanataNepetoideae · Marmoritis Stable locus 2626 No matrix
Mosla soochowensisNepetoideae · Mosla Stable locus 2626 No matrix
Petraeovitex bambusetoriumPeronematoideae · Petraeovitex Stable locus 2626 No matrix
Salvia bowleyanaNepetoideae · Salvia Stable locus 2626 No matrix
Scutellaria baicalensisScutellarioideae · Scutellaria Stable locus 2626 No matrix
Agastache rugosaNepetoideae · Agastache Stable locus 2525 No matrix
Ajuga decumbensAjugoideae · Ajuga Stable locus 2525 No matrix
Cornutia pyramidataPremnoideae · Cornutia Stable locus 2525 No matrix
Glechoma hederaceaNepetoideae · Glechoma Stable locus 2525 No matrix
Scutellaria barbataScutellarioideae · Scutellaria Stable locus 2525 No matrix
Dracocephalum rupestreNepetoideae · Dracocephalum Stable locus 2424 No matrix
Holmskioldia sanguineaScutellarioideae · Holmskioldia Stable locus 2424 No matrix
Mosla chinensisNepetoideae · Mosla Stable locus 2424 No matrix
Origanum vulgareNepetoideae · Origanum Stable locus 2424 No matrix
Salvia hispanicaNepetoideae · Salvia Stable locus 2424 No matrix
Salvia miltiorrhizaNepetoideae · Salvia Stable locus 2424 Available
Drepanocaryum sewerzowiiNepetoideae · Drepanocaryum Stable locus 2323 No matrix
Gmelina philippensisPremnoideae · Gmelina Stable locus 2323 No matrix
Hyptis suaveolensNepetoideae · Hyptis Stable locus 2323 No matrix
Melissa officinalisNepetoideae · Melissa Stable locus 2323 No matrix
Thymus quinquecostatusNepetoideae · Thymus Stable locus 2323 No matrix
Vitex agnus-castusViticoideae · Vitex Stable locus 2323 No matrix
Collinsonia canadensisNepetoideae · Collinsonia Stable locus 2222 No matrix
Leonurus cardiacaLamioideae · Leonurus Stable locus 2222 No matrix
Marrubium vulgareLamioideae · Marrubium Stable locus 2222 No matrix
Mentha x piperitaNepetoideae · Mentha Stable locus 2222 No matrix
Perilla citriodoraNepetoideae · Perilla Stable locus 2222 No matrix
Perilla frutescens var. hirtellaNepetoideae · Perilla Stable locus 2222 No matrix
Plectranthus barbatusNepetoideae · Plectranthus Stable locus 2222 No matrix
Clinopodium gracileNepetoideae · Clinopodium Stable locus 2121 No matrix
Isodon lophanthoidesNepetoideae · Isodon Stable locus 2121 No matrix
Isodon serraNepetoideae · Isodon Stable locus 2121 No matrix
Lavandula angustifoliaNepetoideae · Lavandula Stable locus 2121 No matrix
Mentha longifoliaNepetoideae · Mentha Stable locus 2121 Available
Prostanthera lasianthosProstantheroideae · Prostanthera Stable locus 2121 No matrix
Thymus vulgarisNepetoideae · Thymus Stable locus 2121 No matrix
Callicarpa nudifloraCallicarpoideae · Callicarpa Stable locus 2020 No matrix
Lamium albumLamioideae · Lamium Stable locus 2020 No matrix
Phlomis fruticosaLamioideae · Phlomis Stable locus 2020 No matrix
Westringia fruticosaProstantheroideae · Westringia Stable locus 2020 No matrix
Ballota pseudodictamnusLamioideae · Ballota Stable locus 1919 No matrix
Monarda didymaNepetoideae · Monarda Stable locus 1919 No matrix
Perovskia atriplicifoliaNepetoideae · Perovskia Stable locus 1919 No matrix
Salvia officinalisNepetoideae · Salvia Stable locus 1919 No matrix
Schizonepeta tenuifoliaNepetoideae · Schizonepeta Stable locus 1919 No matrix
Ajuga reptansAjugoideae · Ajuga Stable locus 1818 No matrix
Congea tomentosaSymphorematoideae · Congea Stable locus 1818 No matrix
Leonotis leonurusLamioideae · Leonotis Stable locus 1818 No matrix
Leonurus japonicusLamioideae · Leonurus Stable locus 1818 No matrix
Premna microphyllaPremnoideae · Premna Stable locus 1818 No matrix
Salvia sclareaNepetoideae · Salvia Stable locus 1818 No matrix
Mentha spicataNepetoideae · Mentha Stable locus 1717 No matrix
Leonurus sibiricusLamioideae · Leonurus Stable locus 1616 No matrix
Origanum majoranaNepetoideae · Origanum Stable locus 1414 No matrix

Candidate records

Traceable candidate identifiers

Filter and inspect candidate identifiers for this family.

Clear
Candidate IDSpeciesPathway / familyEvidenceConfidenceIdentityHMM score
g1057.t1.1.5b2d4a2b
Nepeta catariaTerpenoid · HDS_IspGblast+hmm High 79.0%21.7
10:ILLG30G44.17m1
Isodon lophanthoidesTerpenoid · HDS_IspGblast Medium 37.5%—
1362.g7.t1
Ocimum basilicumTerpenoid · HDS_IspGblast Medium 72.2%—
1785.g5.t1
Ocimum basilicumTerpenoid · HDS_IspGblast Medium 38.4%—
1791.g42.t1
Ocimum basilicumTerpenoid · HDS_IspGblast Medium 72.2%—
1791.g43.t1
Ocimum basilicumTerpenoid · HDS_IspGblast Medium 71.4%—
1791.g44.t1
Ocimum basilicumTerpenoid · HDS_IspGblast Medium 68.2%—
1842.g62.t1
Ocimum basilicumTerpenoid · HDS_IspGblast Medium 37.3%—
18:ILLG2G3.107m1
Isodon lophanthoidesTerpenoid · HDS_IspGblast Medium 35.7%—
18:ILLG2G76.2m1
Isodon lophanthoidesTerpenoid · HDS_IspGblast Medium 74.4%—
1917.g11.t1
Ocimum basilicumTerpenoid · HDS_IspGblast Medium 38.1%—
19:ILLG3G282.31m1
Isodon lophanthoidesTerpenoid · HDS_IspGblast Medium 71.0%—
19:ILLG3G282.32m1
Isodon lophanthoidesTerpenoid · HDS_IspGblast Medium 70.8%—
23:ILLG1G106.43m1
Isodon lophanthoidesTerpenoid · HDS_IspGblast Medium 37.5%—
30:ILLG11G215.97m1
Isodon lophanthoidesTerpenoid · HDS_IspGblast Medium 72.6%—
30:ILLG11G25.47m1
Isodon lophanthoidesTerpenoid · HDS_IspGblast Medium 39.1%—
31:ILLG4G309.13m1
Isodon lophanthoidesTerpenoid · HDS_IspGblast Medium 77.6%—
358068.g1.t1
Ocimum basilicumTerpenoid · HDS_IspGblast Medium 76.0%—
368048.g1.t1
Ocimum basilicumTerpenoid · HDS_IspGblast Medium 71.3%—
370210.g3.t1
Ocimum basilicumTerpenoid · HDS_IspGblast Medium 76.8%—
374508.g1.t1
Ocimum basilicumTerpenoid · HDS_IspGblast Medium 76.0%—
376.g130.t1
Ocimum basilicumTerpenoid · HDS_IspGblast Medium 33.3%—
377888.g5.t1
Ocimum basilicumTerpenoid · HDS_IspGblast Medium 71.4%—
379260.g5.t1
Ocimum basilicumTerpenoid · HDS_IspGblast Medium 38.4%—
380.g20.t1
Ocimum basilicumTerpenoid · HDS_IspGblast Medium 40.0%—
381530.g1.t1
Ocimum basilicumTerpenoid · HDS_IspGblast Medium 34.6%—
381677.g62.t1
Ocimum basilicumTerpenoid · HDS_IspGblast Medium 64.0%—
381677.g63.t1
Ocimum basilicumTerpenoid · HDS_IspGblast Medium 73.8%—
382063.g18.t1
Ocimum basilicumTerpenoid · HDS_IspGblast Medium 77.1%—
382166.g54.t1
Ocimum basilicumTerpenoid · HDS_IspGblast Medium 38.7%—
382966.g36.t1
Ocimum basilicumTerpenoid · HDS_IspGblast Medium 71.4%—
383058.g9.t1
Ocimum basilicumTerpenoid · HDS_IspGblast Medium 76.2%—
383069.g27.t1
Ocimum basilicumTerpenoid · HDS_IspGblast Medium 70.5%—
383264.g28.t1
Ocimum basilicumTerpenoid · HDS_IspGblast Medium 40.0%—
383331.g121.t1
Ocimum basilicumTerpenoid · HDS_IspGblast Medium 77.5%—
383508.g27.t1
Ocimum basilicumTerpenoid · HDS_IspGblast Medium 77.1%—
383905.g45.t1
Ocimum basilicumTerpenoid · HDS_IspGblast Medium 66.7%—
383969.g8.t1
Ocimum basilicumTerpenoid · HDS_IspGblast Medium 73.0%—
384606.g5.t1
Ocimum basilicumTerpenoid · HDS_IspGblast Medium 37.3%—
384983.g148.t1
Ocimum basilicumTerpenoid · HDS_IspGblast Medium 74.2%—
385239.g40.t1
Ocimum basilicumTerpenoid · HDS_IspGblast Medium 68.9%—
385244.g57.t1
Ocimum basilicumTerpenoid · HDS_IspGblast Medium 73.0%—
386129.g87.t1
Ocimum basilicumTerpenoid · HDS_IspGblast Medium 76.3%—
3:ILLG6G335.97m1
Isodon lophanthoidesTerpenoid · HDS_IspGblast Medium 76.0%—
447.g85.t1
Ocimum basilicumTerpenoid · HDS_IspGblast Medium 77.9%—
456.g108.t1
Ocimum basilicumTerpenoid · HDS_IspGblast Medium 77.5%—
507.g172.t1
Ocimum basilicumTerpenoid · HDS_IspGblast Medium 77.5%—
544.g20.t1
Ocimum basilicumTerpenoid · HDS_IspGblast Medium 40.1%—
549.g450.t1
Ocimum basilicumTerpenoid · HDS_IspGblast Medium 51.5%—
565.g126.t1
Ocimum basilicumTerpenoid · HDS_IspGblast Medium 78.8%—