LamiOmicsDB Lamiaceae Multi-Omics Database
v1 808 species · 3 phylogenies · 6,313 sequences

Pathway-family scientific record

HMGR

3-hydroxy-3-methylglutaryl-CoA reductase family

This module includes PlantSME enzyme-family assignments and traceable candidate protein identifiers from genome-derived or transcriptome-derived protein sets.

Browse candidatesCompare speciesCSV
Stable locus plantsmeTerpenoid biosynthesis
Public candidate IDs
870
Species with candidates
80
Species with assignments
80
Source assignments
880
Gene-tree candidates
0
Motif candidates
0

Evidence profile

Available evidence layers

◆Candidate identifiers870 public species-linked identifiers can be inspected.
GTGene-tree workflow0 comparable source candidates; 0 high-confidence source calls.
MMotif-screen proxy0 motif-screen candidates; 0 with all required motif proxies.
100 kbLocal clustering proxy0 clusters across 0 species; maximum cluster size 0.

Comparative signature

Lamiaceae comparison fields

Rate delta
Not calculated
Prevalence delta
Not calculated
Comparable source
PlantSME family assignments
Comparable source count
880
Public candidate count
870
Evidence mode
plantsme

Species coverage

Assignment and locus coverage by species

Source family counts and public candidate identifiers are shown in separate columns.

SpeciesEvidence stateSource countCandidate IDsExpression
Stenogyne calaminthoidesLamioideae · Stenogyne Stable locus 6050 No matrix
Teucrium chamaedrysAjugoideae · Teucrium Stable locus 4040 No matrix
Pogostemon cablinLamioideae · Pogostemon Stable locus 2828 Available
Ocimum basilicumNepetoideae · Ocimum Stable locus 2525 Available
Elsholtzia splendensNepetoideae · Elsholtzia Stable locus 2323 No matrix
Leonurus japonicusLamioideae · Leonurus Stable locus 1818 No matrix
Phlomoides rotataLamioideae · Phlomoides Stable locus 1818 No matrix
Leonurus sibiricusLamioideae · Leonurus Stable locus 1717 No matrix
Thymus vulgarisNepetoideae · Thymus Stable locus 1616 No matrix
Isodon lophanthoidesNepetoideae · Isodon Stable locus 1515 No matrix
Salvia rosmarinusNepetoideae · Salvia Stable locus 1414 Available
Callicarpa americanaCallicarpoideae · Callicarpa Stable locus 1313 No matrix
Clinopodium gracileNepetoideae · Clinopodium Stable locus 1313 No matrix
Gmelina philippensisPremnoideae · Gmelina Stable locus 1313 No matrix
Prunella vulgarisNepetoideae · Prunella Stable locus 1313 No matrix
Salvia bowleyanaNepetoideae · Salvia Stable locus 1313 No matrix
Salvia hispanicaNepetoideae · Salvia Stable locus 1313 No matrix
Salvia splendensNepetoideae · Salvia Stable locus 1313 No matrix
Vitex agnus-castusViticoideae · Vitex Stable locus 1313 No matrix
Nepeta catariaNepetoideae · Nepeta Stable locus 1212 Available
Plectranthus barbatusNepetoideae · Plectranthus Stable locus 1212 No matrix
Premna microphyllaPremnoideae · Premna Stable locus 1212 No matrix
Clinopodium barosmumNepetoideae · Clinopodium Stable locus 1111 No matrix
Collinsonia canadensisNepetoideae · Collinsonia Stable locus 1111 No matrix
Congea tomentosaSymphorematoideae · Congea Stable locus 1111 No matrix
Hyssopus officinalisNepetoideae · Hyssopus Stable locus 1111 No matrix
Lavandula angustifoliaNepetoideae · Lavandula Stable locus 1111 No matrix
Ocimum tenuiflorumNepetoideae · Ocimum Stable locus 1111 No matrix
Origanum vulgareNepetoideae · Origanum Stable locus 1111 No matrix
Teucrium marumAjugoideae · Teucrium Stable locus 1111 No matrix
Ballota pseudodictamnusLamioideae · Ballota Stable locus 1010 No matrix
Hyptis suaveolensNepetoideae · Hyptis Stable locus 1010 No matrix
Leonotis leonurusLamioideae · Leonotis Stable locus 1010 No matrix
Perilla frutescensNepetoideae · Perilla Stable locus 1010 No matrix
Stachys officinalisLamioideae · Stachys Stable locus 1010 No matrix
Agastache foeniculumNepetoideae · Agastache Stable locus 99 No matrix
Agastache rugosaNepetoideae · Agastache Stable locus 99 No matrix
Cornutia pyramidataPremnoideae · Cornutia Stable locus 99 No matrix
Dracocephalum rupestreNepetoideae · Dracocephalum Stable locus 99 No matrix
Drepanocaryum sewerzowiiNepetoideae · Drepanocaryum Stable locus 99 No matrix
Glechoma longitubaNepetoideae · Glechoma Stable locus 99 No matrix
Lamium albumLamioideae · Lamium Stable locus 99 No matrix
Mentha spicataNepetoideae · Mentha Stable locus 99 No matrix
Mosla soochowensisNepetoideae · Mosla Stable locus 99 No matrix
Perovskia atriplicifoliaNepetoideae · Perovskia Stable locus 99 No matrix
Salvia divinorumNepetoideae · Salvia Stable locus 99 No matrix
Schizonepeta tenuifoliaNepetoideae · Schizonepeta Stable locus 99 No matrix
Tectona grandisTectonoideae · Tectona Stable locus 99 Available
Glechoma hederaceaNepetoideae · Glechoma Stable locus 88 No matrix
Isodon serraNepetoideae · Isodon Stable locus 88 No matrix
Melissa officinalisNepetoideae · Melissa Stable locus 88 No matrix
Mentha x piperitaNepetoideae · Mentha Stable locus 88 No matrix
Mosla chinensisNepetoideae · Mosla Stable locus 88 No matrix
Perilla citriodoraNepetoideae · Perilla Stable locus 88 No matrix
Perilla frutescens var. hirtellaNepetoideae · Perilla Stable locus 88 No matrix
Salvia officinalisNepetoideae · Salvia Stable locus 88 No matrix
Scutellaria baicalensisScutellarioideae · Scutellaria Stable locus 88 No matrix
Teucrium canadenseAjugoideae · Teucrium Stable locus 88 No matrix
Callicarpa nudifloraCallicarpoideae · Callicarpa Stable locus 77 No matrix
Holmskioldia sanguineaScutellarioideae · Holmskioldia Stable locus 77 No matrix
Lycopus americanusNepetoideae · Lycopus Stable locus 77 No matrix
Marmoritis complanataNepetoideae · Marmoritis Stable locus 77 No matrix
Marrubium vulgareLamioideae · Marrubium Stable locus 77 No matrix
Origanum majoranaNepetoideae · Origanum Stable locus 77 No matrix
Phlomis fruticosaLamioideae · Phlomis Stable locus 77 No matrix
Rotheca myricoidesAjugoideae · Rotheca Stable locus 77 No matrix
Salvia miltiorrhizaNepetoideae · Salvia Stable locus 77 Available
Westringia fruticosaProstantheroideae · Westringia Stable locus 77 No matrix
Leonurus cardiacaLamioideae · Leonurus Stable locus 66 No matrix
Monarda didymaNepetoideae · Monarda Stable locus 66 No matrix
Nepeta mussiniiNepetoideae · Nepeta Stable locus 66 Available
Prostanthera lasianthosProstantheroideae · Prostanthera Stable locus 66 No matrix
Salvia sclareaNepetoideae · Salvia Stable locus 66 No matrix
Thymus quinquecostatusNepetoideae · Thymus Stable locus 66 No matrix
Petraeovitex bambusetoriumPeronematoideae · Petraeovitex Stable locus 55 No matrix
Scutellaria barbataScutellarioideae · Scutellaria Stable locus 55 No matrix
Ajuga decumbensAjugoideae · Ajuga Stable locus 44 No matrix
Clerodendrum bungeiAjugoideae · Clerodendrum Stable locus 44 No matrix
Mentha longifoliaNepetoideae · Mentha Stable locus 44 Available
Ajuga reptansAjugoideae · Ajuga Stable locus 33 No matrix

Candidate records

Traceable candidate identifiers

Filter and inspect candidate identifiers for this family.

Clear
Candidate IDSpeciesPathway / familyEvidenceConfidenceIdentityHMM score
g13988.t1
Hyssopus officinalisTerpenoid · HMGRblast+hmm High 76.8%1019.3
THVU_c72477_g2_i1_len_2077
Thymus vulgarisTerpenoid · HMGRblast+hmm High 76.9%1018.3
DRSE_g9548.t1
Drepanocaryum sewerzowiiTerpenoid · HMGRblast+hmm High 74.9%1017.8
GWHPBJVA006315
Thymus quinquecostatusTerpenoid · HMGRblast+hmm High 78.1%1017.7
Sbow03G0057440.1
Salvia bowleyanaTerpenoid · HMGRblast+hmm High 80.4%1017.6
KAL8503541.1
Phlomoides rotataTerpenoid · HMGRblast+hmm High 74.8%1017.3
Mc4g29080.1
Mosla chinensisTerpenoid · HMGRblast+hmm High 78.9%1017.1
Smil06G0029840.1.v1.484
Salvia miltiorrhizaTerpenoid · HMGRblast+hmm High 75.7%1016.8
g5149.t1
Nepeta mussiniiTerpenoid · HMGRblast+hmm High 78.8%1016.8
Sbow03G0054840.1
Salvia bowleyanaTerpenoid · HMGRblast+hmm High 80.4%1016.5
KAL8503542.1
Phlomoides rotataTerpenoid · HMGRblast+hmm High 74.8%1016.4
origanum_vulgare_507.g564.t1
Origanum vulgareTerpenoid · HMGRblast+hmm High 78.1%1014.8
evm.model.chr9.652
Prunella vulgarisTerpenoid · HMGRblast+hmm High 74.8%1014.7
Mc5g35230.1
Mosla chinensisTerpenoid · HMGRblast+hmm High 70.1%1014.6
XP_042012744.1
Salvia splendensTerpenoid · HMGRblast+hmm High 76.8%1013.7
XP_042012915.1
Salvia splendensTerpenoid · HMGRblast+hmm High 76.8%1013.7
Stenogyne_calaminthoides__EVM_prediction_HiC_scaffold_26.2629.mRNA1
Stenogyne calaminthoidesTerpenoid · HMGRblast+hmm High 74.6%1013.4
evm.model.chr11.699
Prunella vulgarisTerpenoid · HMGRblast+hmm High 76.1%1012.3
XP_047952721.1
Salvia hispanicaTerpenoid · HMGRblast+hmm High 77.4%1012.2
XP_047955047.1
Salvia hispanicaTerpenoid · HMGRblast+hmm High 77.4%1012.2
XP_047952723.1
Salvia hispanicaTerpenoid · HMGRblast+hmm High 77.4%1012.0
XP_047955432.1
Salvia hispanicaTerpenoid · HMGRblast+hmm High 77.4%1012.0
evm.model.chr9.653
Prunella vulgarisTerpenoid · HMGRblast+hmm High 75.7%1011.5
XP_042014428.1
Salvia splendensTerpenoid · HMGRblast+hmm High 76.1%1011.1
Stenogyne_calaminthoides__EVM_prediction_HiC_scaffold_26.2644.mRNA1
Stenogyne calaminthoidesTerpenoid · HMGRblast+hmm High 73.1%1010.4
rna-gnl|WGS:QFCC|chr04_68041084_68042766.mrna1
Perilla frutescensTerpenoid · HMGRblast+hmm High 72.2%1010.4
rna-gnl|WGS:QIYW|chr03_00019313_00020995.mrna1
Perilla citriodoraTerpenoid · HMGRblast+hmm High 72.2%1010.0
rna-gnl|WGS:QIYW|chr03_00019313_00020995.mrna1
Perilla frutescens var. hirtellaTerpenoid · HMGRblast+hmm High 72.2%1010.0
Lj2g15760.1
Leonurus japonicusTerpenoid · HMGRblast+hmm High 77.7%1009.3
GWHPBJVA006316
Thymus quinquecostatusTerpenoid · HMGRblast+hmm High 78.4%1009.1
g6529.t1
Salvia sclareaTerpenoid · HMGRblast+hmm High 75.6%1009.1
rna-gnl|WGS:QFCC|chr06_03095545_03097227.mrna1
Perilla frutescensTerpenoid · HMGRblast+hmm High 71.9%1005.2
Stenogyne_calaminthoides__EVM_prediction_HiC_scaffold_27.463.mRNA1
Stenogyne calaminthoidesTerpenoid · HMGRblast+hmm High 73.3%1004.5
Stenogyne_calaminthoides__EVM_prediction_HiC_scaffold_27.402.mRNA1
Stenogyne calaminthoidesTerpenoid · HMGRblast+hmm High 72.2%1003.4
Stenogyne_calaminthoides__EVM_prediction_HiC_scaffold_26.2628.mRNA1
Stenogyne calaminthoidesTerpenoid · HMGRblast+hmm High 73.4%1003.1
Stenogyne_calaminthoides__EVM_prediction_HiC_scaffold_26.2641.mRNA1
Stenogyne calaminthoidesTerpenoid · HMGRblast+hmm High 73.3%1002.1
Stenogyne_calaminthoides__EVM_prediction_HiC_scaffold_27.412.mRNA1
Stenogyne calaminthoidesTerpenoid · HMGRblast+hmm High 74.2%1000.2
Sch000001227
Schizonepeta tenuifoliaTerpenoid · HMGRblast+hmm High 75.8%999.4
AG34_scaffold1_24130T
Agastache rugosaTerpenoid · HMGRblast+hmm High 74.5%997.9
DRSE_g9546.t1
Drepanocaryum sewerzowiiTerpenoid · HMGRblast+hmm High 78.2%997.9
g6532.t1
Salvia sclareaTerpenoid · HMGRblast+hmm High 76.4%997.1
MACO_g8824.t1
Marmoritis complanataTerpenoid · HMGRblast+hmm High 79.3%996.6
Es1B.G074900.t2
Elsholtzia splendensTerpenoid · HMGRblast+hmm High 73.0%993.5
Lj3g24800.1
Leonurus japonicusTerpenoid · HMGRblast+hmm High 75.1%993.5
Stenogyne_calaminthoides__EVM_prediction_HiC_scaffold_26.2637.mRNA1
Stenogyne calaminthoidesTerpenoid · HMGRblast+hmm High 73.5%992.9
Stenogyne_calaminthoides__EVM_prediction_HiC_scaffold_27.447.mRNA1
Stenogyne calaminthoidesTerpenoid · HMGRblast+hmm High 73.6%992.7
Dru_5G0009240.1
Dracocephalum rupestreTerpenoid · HMGRblast+hmm High 75.0%990.9
g31456.t1
Hyssopus officinalisTerpenoid · HMGRblast+hmm High 76.4%990.7
Dru_5G0009220.1
Dracocephalum rupestreTerpenoid · HMGRblast+hmm High 77.8%990.4
Pat_A09G077300.m1
Pogostemon cablinTerpenoid · HMGRblast+hmm High 72.6%989.8