LamiOmicsDB Lamiaceae Multi-Omics Database
v1 808 species · 3 phylogenies · 6,313 sequences

Pathway-family scientific record

HMGR

3-hydroxy-3-methylglutaryl-CoA reductase family

This module includes PlantSME enzyme-family assignments and traceable candidate protein identifiers from genome-derived or transcriptome-derived protein sets.

Browse candidatesCompare speciesCSV
Stable locus plantsmeTerpenoid biosynthesis
Public candidate IDs
870
Species with candidates
80
Species with assignments
80
Source assignments
880
Gene-tree candidates
0
Motif candidates
0

Evidence profile

Available evidence layers

◆Candidate identifiers870 public species-linked identifiers can be inspected.
GTGene-tree workflow0 comparable source candidates; 0 high-confidence source calls.
MMotif-screen proxy0 motif-screen candidates; 0 with all required motif proxies.
100 kbLocal clustering proxy0 clusters across 0 species; maximum cluster size 0.

Comparative signature

Lamiaceae comparison fields

Rate delta
Not calculated
Prevalence delta
Not calculated
Comparable source
PlantSME family assignments
Comparable source count
880
Public candidate count
870
Evidence mode
plantsme

Species coverage

Assignment and locus coverage by species

Source family counts and public candidate identifiers are shown in separate columns.

SpeciesEvidence stateSource countCandidate IDsExpression
Stenogyne calaminthoidesLamioideae · Stenogyne Stable locus 6050 No matrix
Teucrium chamaedrysAjugoideae · Teucrium Stable locus 4040 No matrix
Pogostemon cablinLamioideae · Pogostemon Stable locus 2828 Available
Ocimum basilicumNepetoideae · Ocimum Stable locus 2525 Available
Elsholtzia splendensNepetoideae · Elsholtzia Stable locus 2323 No matrix
Leonurus japonicusLamioideae · Leonurus Stable locus 1818 No matrix
Phlomoides rotataLamioideae · Phlomoides Stable locus 1818 No matrix
Leonurus sibiricusLamioideae · Leonurus Stable locus 1717 No matrix
Thymus vulgarisNepetoideae · Thymus Stable locus 1616 No matrix
Isodon lophanthoidesNepetoideae · Isodon Stable locus 1515 No matrix
Salvia rosmarinusNepetoideae · Salvia Stable locus 1414 Available
Callicarpa americanaCallicarpoideae · Callicarpa Stable locus 1313 No matrix
Clinopodium gracileNepetoideae · Clinopodium Stable locus 1313 No matrix
Gmelina philippensisPremnoideae · Gmelina Stable locus 1313 No matrix
Prunella vulgarisNepetoideae · Prunella Stable locus 1313 No matrix
Salvia bowleyanaNepetoideae · Salvia Stable locus 1313 No matrix
Salvia hispanicaNepetoideae · Salvia Stable locus 1313 No matrix
Salvia splendensNepetoideae · Salvia Stable locus 1313 No matrix
Vitex agnus-castusViticoideae · Vitex Stable locus 1313 No matrix
Nepeta catariaNepetoideae · Nepeta Stable locus 1212 Available
Plectranthus barbatusNepetoideae · Plectranthus Stable locus 1212 No matrix
Premna microphyllaPremnoideae · Premna Stable locus 1212 No matrix
Clinopodium barosmumNepetoideae · Clinopodium Stable locus 1111 No matrix
Collinsonia canadensisNepetoideae · Collinsonia Stable locus 1111 No matrix
Congea tomentosaSymphorematoideae · Congea Stable locus 1111 No matrix
Hyssopus officinalisNepetoideae · Hyssopus Stable locus 1111 No matrix
Lavandula angustifoliaNepetoideae · Lavandula Stable locus 1111 No matrix
Ocimum tenuiflorumNepetoideae · Ocimum Stable locus 1111 No matrix
Origanum vulgareNepetoideae · Origanum Stable locus 1111 No matrix
Teucrium marumAjugoideae · Teucrium Stable locus 1111 No matrix
Ballota pseudodictamnusLamioideae · Ballota Stable locus 1010 No matrix
Hyptis suaveolensNepetoideae · Hyptis Stable locus 1010 No matrix
Leonotis leonurusLamioideae · Leonotis Stable locus 1010 No matrix
Perilla frutescensNepetoideae · Perilla Stable locus 1010 No matrix
Stachys officinalisLamioideae · Stachys Stable locus 1010 No matrix
Agastache foeniculumNepetoideae · Agastache Stable locus 99 No matrix
Agastache rugosaNepetoideae · Agastache Stable locus 99 No matrix
Cornutia pyramidataPremnoideae · Cornutia Stable locus 99 No matrix
Dracocephalum rupestreNepetoideae · Dracocephalum Stable locus 99 No matrix
Drepanocaryum sewerzowiiNepetoideae · Drepanocaryum Stable locus 99 No matrix
Glechoma longitubaNepetoideae · Glechoma Stable locus 99 No matrix
Lamium albumLamioideae · Lamium Stable locus 99 No matrix
Mentha spicataNepetoideae · Mentha Stable locus 99 No matrix
Mosla soochowensisNepetoideae · Mosla Stable locus 99 No matrix
Perovskia atriplicifoliaNepetoideae · Perovskia Stable locus 99 No matrix
Salvia divinorumNepetoideae · Salvia Stable locus 99 No matrix
Schizonepeta tenuifoliaNepetoideae · Schizonepeta Stable locus 99 No matrix
Tectona grandisTectonoideae · Tectona Stable locus 99 Available
Glechoma hederaceaNepetoideae · Glechoma Stable locus 88 No matrix
Isodon serraNepetoideae · Isodon Stable locus 88 No matrix
Melissa officinalisNepetoideae · Melissa Stable locus 88 No matrix
Mentha x piperitaNepetoideae · Mentha Stable locus 88 No matrix
Mosla chinensisNepetoideae · Mosla Stable locus 88 No matrix
Perilla citriodoraNepetoideae · Perilla Stable locus 88 No matrix
Perilla frutescens var. hirtellaNepetoideae · Perilla Stable locus 88 No matrix
Salvia officinalisNepetoideae · Salvia Stable locus 88 No matrix
Scutellaria baicalensisScutellarioideae · Scutellaria Stable locus 88 No matrix
Teucrium canadenseAjugoideae · Teucrium Stable locus 88 No matrix
Callicarpa nudifloraCallicarpoideae · Callicarpa Stable locus 77 No matrix
Holmskioldia sanguineaScutellarioideae · Holmskioldia Stable locus 77 No matrix
Lycopus americanusNepetoideae · Lycopus Stable locus 77 No matrix
Marmoritis complanataNepetoideae · Marmoritis Stable locus 77 No matrix
Marrubium vulgareLamioideae · Marrubium Stable locus 77 No matrix
Origanum majoranaNepetoideae · Origanum Stable locus 77 No matrix
Phlomis fruticosaLamioideae · Phlomis Stable locus 77 No matrix
Rotheca myricoidesAjugoideae · Rotheca Stable locus 77 No matrix
Salvia miltiorrhizaNepetoideae · Salvia Stable locus 77 Available
Westringia fruticosaProstantheroideae · Westringia Stable locus 77 No matrix
Leonurus cardiacaLamioideae · Leonurus Stable locus 66 No matrix
Monarda didymaNepetoideae · Monarda Stable locus 66 No matrix
Nepeta mussiniiNepetoideae · Nepeta Stable locus 66 Available
Prostanthera lasianthosProstantheroideae · Prostanthera Stable locus 66 No matrix
Salvia sclareaNepetoideae · Salvia Stable locus 66 No matrix
Thymus quinquecostatusNepetoideae · Thymus Stable locus 66 No matrix
Petraeovitex bambusetoriumPeronematoideae · Petraeovitex Stable locus 55 No matrix
Scutellaria barbataScutellarioideae · Scutellaria Stable locus 55 No matrix
Ajuga decumbensAjugoideae · Ajuga Stable locus 44 No matrix
Clerodendrum bungeiAjugoideae · Clerodendrum Stable locus 44 No matrix
Mentha longifoliaNepetoideae · Mentha Stable locus 44 Available
Ajuga reptansAjugoideae · Ajuga Stable locus 33 No matrix

Candidate records

Traceable candidate identifiers

Filter and inspect candidate identifiers for this family.

Clear
Candidate IDSpeciesPathway / familyEvidenceConfidenceIdentityHMM score
KAL1540653.1
Salvia divinorumTerpenoid · HMGRblast+hmm High 78.2%899.2
evm.model.LG24.867
Clinopodium barosmumTerpenoid · HMGRblast+hmm High 80.6%898.7
Sbow02G0027340.1
Salvia bowleyanaTerpenoid · HMGRblast+hmm High 78.4%898.6
GLHE_c64701_g1_i2_len_1861
Glechoma hederaceaTerpenoid · HMGRblast+hmm High 87.1%897.8
KAL1547115.1
Salvia divinorumTerpenoid · HMGRblast+hmm High 76.0%897.8
g32038.t1
Ajuga decumbensTerpenoid · HMGRblast+hmm High 76.7%897.8
AJRE_c20325_g1_i2_len_2275
Ajuga reptansTerpenoid · HMGRblast+hmm High 79.2%897.3
DRSE_g3465.t1
Drepanocaryum sewerzowiiTerpenoid · HMGRblast+hmm High 75.9%896.6
147.g1.t1
Ocimum basilicumTerpenoid · HMGRblast+hmm High 78.1%896.4
HYSU_c31582_g1_i2_len_2098
Hyptis suaveolensTerpenoid · HMGRblast+hmm High 76.8%895.7
g5087.t1
Nepeta catariaTerpenoid · HMGRblast+hmm High 75.0%895.6
ORMA_c47729_g1_i1_len_2288
Origanum majoranaTerpenoid · HMGRblast+hmm High 77.3%895.2
origanum_vulgare_405.g26.t1
Origanum vulgareTerpenoid · HMGRblast+hmm High 78.2%895.1
146.g1.t1
Ocimum basilicumTerpenoid · HMGRblast+hmm High 77.8%894.9
Roff24450323540
Salvia rosmarinusTerpenoid · HMGRblast+hmm High 78.0%894.8
PLBA_c39608_g1_i1_len_1875
Plectranthus barbatusTerpenoid · HMGRblast+hmm High 76.1%894.2
XP_047980334.1
Salvia hispanicaTerpenoid · HMGRblast+hmm High 79.7%893.9
Sch000003939
Schizonepeta tenuifoliaTerpenoid · HMGRblast+hmm High 74.5%893.6
GlLon_025827-T1
Glechoma longitubaTerpenoid · HMGRblast+hmm High 75.2%893.2
origanum_vulgare_791.g31.t1
Origanum vulgareTerpenoid · HMGRblast+hmm High 77.1%893.1
XP_042006471.1
Salvia splendensTerpenoid · HMGRblast+hmm High 78.9%892.9
g25553.t1
Nepeta catariaTerpenoid · HMGRblast+hmm High 75.3%892.9
Ms_c003g02307.1
Mosla soochowensisTerpenoid · HMGRblast+hmm High 77.3%892.4
AG34_scaffold1_07900T
Agastache rugosaTerpenoid · HMGRblast+hmm High 74.4%891.9
MACO_g2062.t1
Marmoritis complanataTerpenoid · HMGRblast+hmm High 76.9%891.7
Mlonscaffold_1_length_466995370044220.1.v1.326
Mentha longifoliaTerpenoid · HMGRblast+hmm High 77.3%891.7
Stenogyne_calaminthoides__EVM_prediction_HiC_scaffold_26.1447.mRNA1
Stenogyne calaminthoidesTerpenoid · HMGRblast+hmm High 73.7%891.7
GWHPBJVA018462
Thymus quinquecostatusTerpenoid · HMGRblast+hmm High 79.0%891.5
GWHPBJVA024445
Thymus quinquecostatusTerpenoid · HMGRblast+hmm High 77.1%891.5
Sbai9A210T74.1
Scutellaria baicalensisTerpenoid · HMGRblast+hmm High 85.0%891.4
rna-gnl|WGS:QFCC|chr04_61413349_61415715.mrna1
Perilla frutescensTerpenoid · HMGRblast+hmm High 77.7%891.0
rna-gnl|WGS:QIYW|chr03_07369815_07372181.mrna1
Perilla citriodoraTerpenoid · HMGRblast+hmm High 77.7%891.0
rna-gnl|WGS:QIYW|chr03_07369815_07372181.mrna1
Perilla frutescens var. hirtellaTerpenoid · HMGRblast+hmm High 77.7%891.0
Ls3g28430.1
Leonurus sibiricusTerpenoid · HMGRblast+hmm High 77.9%890.9
evm.model.chr12.1115
Prunella vulgarisTerpenoid · HMGRblast+hmm High 78.9%890.4
g2011.t1
Salvia sclareaTerpenoid · HMGRblast+hmm High 75.4%890.4
Ls3g28500.1
Leonurus sibiricusTerpenoid · HMGRblast+hmm High 77.5%890.2
evm.model.ptg000023l.87
Isodon serraTerpenoid · HMGRblast+hmm High 76.7%890.2
PEBA_c43634_g2_i1_len_2388
Petraeovitex bambusetoriumTerpenoid · HMGRblast+hmm High 78.5%889.9
MACO_g18090.t1
Marmoritis complanataTerpenoid · HMGRblast+hmm High 75.4%889.8
g23493.t1
Nepeta catariaTerpenoid · HMGRblast+hmm High 76.9%889.8
evm.model.chr4.1081
Prunella vulgarisTerpenoid · HMGRblast+hmm High 77.5%889.7
Mc9g23600.1
Mosla chinensisTerpenoid · HMGRblast+hmm High 77.4%889.6
evm.model.chr13.2150
Prunella vulgarisTerpenoid · HMGRblast+hmm High 77.5%889.6
evm.model.ptg000023l.1139
Isodon serraTerpenoid · HMGRblast+hmm High 83.1%889.3
g5386.t1
Hyssopus officinalisTerpenoid · HMGRblast+hmm High 74.4%889.3
Ls3g28490.1
Leonurus sibiricusTerpenoid · HMGRblast+hmm High 77.7%889.2
g27185.t1
Nepeta catariaTerpenoid · HMGRblast+hmm High 76.8%889.2
Clgra_029326-T1
Clinopodium gracileTerpenoid · HMGRblast+hmm High 77.7%889.1
evm.model.LG16.7
Clinopodium barosmumTerpenoid · HMGRblast+hmm High 84.4%888.9