LamiOmicsDB Lamiaceae Multi-Omics Database
v1 808 species · 3 phylogenies · 6,313 sequences

Pathway-family scientific record

MDS_IspF

MDS / IspF enzyme-family module

This module includes PlantSME enzyme-family assignments and traceable candidate protein identifiers from genome-derived or transcriptome-derived protein sets.

Browse candidatesCompare speciesCSV
Stable locus plantsmeTerpenoid biosynthesis
Public candidate IDs
139
Species with candidates
78
Species with assignments
78
Source assignments
139
Gene-tree candidates
0
Motif candidates
0

Evidence profile

Available evidence layers

◆Candidate identifiers139 public species-linked identifiers can be inspected.
GTGene-tree workflow0 comparable source candidates; 0 high-confidence source calls.
MMotif-screen proxy0 motif-screen candidates; 0 with all required motif proxies.
100 kbLocal clustering proxy0 clusters across 0 species; maximum cluster size 0.

Comparative signature

Lamiaceae comparison fields

Rate delta
Not calculated
Prevalence delta
Not calculated
Comparable source
PlantSME family assignments
Comparable source count
139
Public candidate count
139
Evidence mode
plantsme

Species coverage

Assignment and locus coverage by species

Source family counts and public candidate identifiers are shown in separate columns.

SpeciesEvidence stateSource countCandidate IDsExpression
Pogostemon cablinLamioideae · Pogostemon Stable locus 99 Available
Nepeta mussiniiNepetoideae · Nepeta Stable locus 66 Available
Callicarpa americanaCallicarpoideae · Callicarpa Stable locus 44 No matrix
Nepeta catariaNepetoideae · Nepeta Stable locus 44 Available
Prostanthera lasianthosProstantheroideae · Prostanthera Stable locus 44 No matrix
Salvia splendensNepetoideae · Salvia Stable locus 44 No matrix
Stenogyne calaminthoidesLamioideae · Stenogyne Stable locus 44 No matrix
Congea tomentosaSymphorematoideae · Congea Stable locus 33 No matrix
Gmelina philippensisPremnoideae · Gmelina Stable locus 33 No matrix
Hyptis suaveolensNepetoideae · Hyptis Stable locus 33 No matrix
Tectona grandisTectonoideae · Tectona Stable locus 33 Available
Teucrium chamaedrysAjugoideae · Teucrium Stable locus 33 No matrix
Westringia fruticosaProstantheroideae · Westringia Stable locus 33 No matrix
Ajuga decumbensAjugoideae · Ajuga Stable locus 22 No matrix
Ajuga reptansAjugoideae · Ajuga Stable locus 22 No matrix
Callicarpa nudifloraCallicarpoideae · Callicarpa Stable locus 22 No matrix
Clerodendrum bungeiAjugoideae · Clerodendrum Stable locus 22 No matrix
Clinopodium barosmumNepetoideae · Clinopodium Stable locus 22 No matrix
Cornutia pyramidataPremnoideae · Cornutia Stable locus 22 No matrix
Drepanocaryum sewerzowiiNepetoideae · Drepanocaryum Stable locus 22 No matrix
Elsholtzia splendensNepetoideae · Elsholtzia Stable locus 22 No matrix
Hyssopus officinalisNepetoideae · Hyssopus Stable locus 22 No matrix
Lavandula angustifoliaNepetoideae · Lavandula Stable locus 22 No matrix
Ocimum basilicumNepetoideae · Ocimum Stable locus 22 Available
Petraeovitex bambusetoriumPeronematoideae · Petraeovitex Stable locus 22 No matrix
Premna microphyllaPremnoideae · Premna Stable locus 22 No matrix
Prunella vulgarisNepetoideae · Prunella Stable locus 22 No matrix
Salvia officinalisNepetoideae · Salvia Stable locus 22 No matrix
Salvia rosmarinusNepetoideae · Salvia Stable locus 22 Available
Scutellaria baicalensisScutellarioideae · Scutellaria Stable locus 22 No matrix
Scutellaria barbataScutellarioideae · Scutellaria Stable locus 22 No matrix
Stachys officinalisLamioideae · Stachys Stable locus 22 No matrix
Teucrium marumAjugoideae · Teucrium Stable locus 22 No matrix
Vitex agnus-castusViticoideae · Vitex Stable locus 22 No matrix
Agastache foeniculumNepetoideae · Agastache Stable locus 11 No matrix
Agastache rugosaNepetoideae · Agastache Stable locus 11 No matrix
Ballota pseudodictamnusLamioideae · Ballota Stable locus 11 No matrix
Clinopodium gracileNepetoideae · Clinopodium Stable locus 11 No matrix
Collinsonia canadensisNepetoideae · Collinsonia Stable locus 11 No matrix
Dracocephalum rupestreNepetoideae · Dracocephalum Stable locus 11 No matrix
Glechoma hederaceaNepetoideae · Glechoma Stable locus 11 No matrix
Glechoma longitubaNepetoideae · Glechoma Stable locus 11 No matrix
Holmskioldia sanguineaScutellarioideae · Holmskioldia Stable locus 11 No matrix
Isodon lophanthoidesNepetoideae · Isodon Stable locus 11 No matrix
Isodon serraNepetoideae · Isodon Stable locus 11 No matrix
Lamium albumLamioideae · Lamium Stable locus 11 No matrix
Leonotis leonurusLamioideae · Leonotis Stable locus 11 No matrix
Leonurus cardiacaLamioideae · Leonurus Stable locus 11 No matrix
Leonurus japonicusLamioideae · Leonurus Stable locus 11 No matrix
Leonurus sibiricusLamioideae · Leonurus Stable locus 11 No matrix
Lycopus americanusNepetoideae · Lycopus Stable locus 11 No matrix
Marmoritis complanataNepetoideae · Marmoritis Stable locus 11 No matrix
Marrubium vulgareLamioideae · Marrubium Stable locus 11 No matrix
Melissa officinalisNepetoideae · Melissa Stable locus 11 No matrix
Mentha longifoliaNepetoideae · Mentha Stable locus 11 Available
Mentha spicataNepetoideae · Mentha Stable locus 11 No matrix
Mentha x piperitaNepetoideae · Mentha Stable locus 11 No matrix
Monarda didymaNepetoideae · Monarda Stable locus 11 No matrix
Mosla chinensisNepetoideae · Mosla Stable locus 11 No matrix
Mosla soochowensisNepetoideae · Mosla Stable locus 11 No matrix
Ocimum tenuiflorumNepetoideae · Ocimum Stable locus 11 No matrix
Origanum majoranaNepetoideae · Origanum Stable locus 11 No matrix
Origanum vulgareNepetoideae · Origanum Stable locus 11 No matrix
Perilla frutescensNepetoideae · Perilla Stable locus 11 No matrix
Perovskia atriplicifoliaNepetoideae · Perovskia Stable locus 11 No matrix
Phlomis fruticosaLamioideae · Phlomis Stable locus 11 No matrix
Phlomoides rotataLamioideae · Phlomoides Stable locus 11 No matrix
Plectranthus barbatusNepetoideae · Plectranthus Stable locus 11 No matrix
Rotheca myricoidesAjugoideae · Rotheca Stable locus 11 No matrix
Salvia bowleyanaNepetoideae · Salvia Stable locus 11 No matrix
Salvia divinorumNepetoideae · Salvia Stable locus 11 No matrix
Salvia hispanicaNepetoideae · Salvia Stable locus 11 No matrix
Salvia miltiorrhizaNepetoideae · Salvia Stable locus 11 Available
Salvia sclareaNepetoideae · Salvia Stable locus 11 No matrix
Schizonepeta tenuifoliaNepetoideae · Schizonepeta Stable locus 11 No matrix
Teucrium canadenseAjugoideae · Teucrium Stable locus 11 No matrix
Thymus quinquecostatusNepetoideae · Thymus Stable locus 11 No matrix
Thymus vulgarisNepetoideae · Thymus Stable locus 11 No matrix

Candidate records

Traceable candidate identifiers

Filter and inspect candidate identifiers for this family.

Clear
Candidate IDSpeciesPathway / familyEvidenceConfidenceIdentityHMM score
PEBA_c39250_g2_i1_len_1201
Petraeovitex bambusetoriumTerpenoid · MDS_IspFblast+hmm High 74.8%323.5
evm.model.Chr09.516
Callicarpa nudifloraTerpenoid · MDS_IspFblast+hmm High 76.2%323.3
ROMY_c71605_g1_i2_len_1076
Rotheca myricoidesTerpenoid · MDS_IspFblast+hmm High 74.9%322.5
CAame03G0026360.v1.94
Callicarpa americanaTerpenoid · MDS_IspFblast+hmm High 75.7%322.4
KAL8503444.1
Phlomoides rotataTerpenoid · MDS_IspFblast+hmm High 73.7%322.4
PEBA_c39250_g1_i1_len_1169
Petraeovitex bambusetoriumTerpenoid · MDS_IspFblast+hmm High 73.5%322.3
scutellaria_barbata_GWHPAOTP010829
Scutellaria barbataTerpenoid · MDS_IspFblast+hmm High 77.4%322.1
PHFR_c61110_g1_i1_len_1041
Phlomis fruticosaTerpenoid · MDS_IspFblast+hmm High 72.9%322.0
Pat_B04G232700.m1
Pogostemon cablinTerpenoid · MDS_IspFblast+hmm High 73.7%321.7
STOF_c54129_g1_i1_len_885
Stachys officinalisTerpenoid · MDS_IspFblast+hmm High 75.7%321.7
evm.model.Chr05.562
Callicarpa nudifloraTerpenoid · MDS_IspFblast+hmm High 71.8%321.4
GMPH_c90721_g1_i1_len_1338
Gmelina philippensisTerpenoid · MDS_IspFblast+hmm High 78.3%321.1
LECA_c22115_g1_i1_len_1040
Leonurus cardiacaTerpenoid · MDS_IspFblast+hmm High 74.4%321.1
Pat_A04G247400.m1
Pogostemon cablinTerpenoid · MDS_IspFblast+hmm High 73.7%321.1
Ls4g11560.1
Leonurus sibiricusTerpenoid · MDS_IspFblast+hmm High 75.6%321.0
Lj3g11160.1
Leonurus japonicusTerpenoid · MDS_IspFblast+hmm High 88.6%320.9
Mc9g10200.1
Mosla chinensisTerpenoid · MDS_IspFblast+hmm High 77.8%320.9
rna-gnl|WGS:QFCC|chr06_45269674_45271438.mrna1
Perilla frutescensTerpenoid · MDS_IspFblast+hmm High 75.1%320.9
tectona_grandis_Tg16g04860.t1
Tectona grandisTerpenoid · MDS_IspFblast+hmm High 70.1%320.9
COCA_c65935_g1_i2_len_1137
Collinsonia canadensisTerpenoid · MDS_IspFblast+hmm High 82.7%320.8
Stenogyne_calaminthoides__EVM_prediction_HiC_scaffold_27.646.mRNA1
Stenogyne calaminthoidesTerpenoid · MDS_IspFblast+hmm High 76.2%320.8
Stenogyne_calaminthoides__EVM_prediction_HiC_scaffold_27.648.mRNA1
Stenogyne calaminthoidesTerpenoid · MDS_IspFblast+hmm High 76.2%320.8
PRMI_c112800_g1_i1_len_1154
Premna microphyllaTerpenoid · MDS_IspFblast+hmm High 75.1%320.4
LAAL_c50296_g1_i1_len_1019
Lamium albumTerpenoid · MDS_IspFblast+hmm High 72.4%320.3
BAPS_c46775_g1_i1_len_1118
Ballota pseudodictamnusTerpenoid · MDS_IspFblast+hmm High 73.9%320.1
HYSU_c55794_g1_i1_len_1064
Hyptis suaveolensTerpenoid · MDS_IspFblast+hmm High 79.1%320.1
CAame10G0025700.v1.94
Callicarpa americanaTerpenoid · MDS_IspFblast+hmm High 71.8%319.9
COPY_c76323_g2_i1_len_1031
Cornutia pyramidataTerpenoid · MDS_IspFblast+hmm High 74.3%319.9
Es8A.G168900.t1
Elsholtzia splendensTerpenoid · MDS_IspFblast+hmm High 89.1%319.9
Es8B.G169700.t1
Elsholtzia splendensTerpenoid · MDS_IspFblast+hmm High 89.7%319.9
Pat_B03G228200.m1
Pogostemon cablinTerpenoid · MDS_IspFblast+hmm High 73.3%319.8
MAVU_c14325_g1_i1_len_1199
Marrubium vulgareTerpenoid · MDS_IspFblast+hmm High 73.0%319.7
PLBA_c75959_g1_i1_len_1033
Plectranthus barbatusTerpenoid · MDS_IspFblast+hmm High 88.0%319.5
CLBU_c43060_g1_i1_len_945
Clerodendrum bungeiTerpenoid · MDS_IspFblast+hmm High 73.3%319.4
HOSA_c28479_g1_i1_len_1183
Holmskioldia sanguineaTerpenoid · MDS_IspFblast+hmm High 70.9%319.4
LELE_c27481_g1_i1_len_1168
Leonotis leonurusTerpenoid · MDS_IspFblast+hmm High 72.1%319.4
g10921.t1
Ajuga decumbensTerpenoid · MDS_IspFblast+hmm High 80.5%319.2
Ms_c003g00981.1
Mosla soochowensisTerpenoid · MDS_IspFblast+hmm High 82.2%319.1
VIAG_c29560_g1_i1_len_1107
Vitex agnus-castusTerpenoid · MDS_IspFblast+hmm High 75.4%319.1
366092.g1.t1
Ocimum basilicumTerpenoid · MDS_IspFblast+hmm High 75.7%319.0
380513.g12.t1
Ocimum basilicumTerpenoid · MDS_IspFblast+hmm High 75.5%319.0
PEAT_c32026_g1_i1_len_1233
Perovskia atriplicifoliaTerpenoid · MDS_IspFblast+hmm High 73.4%318.9
PRLA_c57542_g1_i1_len_944
Prostanthera lasianthosTerpenoid · MDS_IspFblast+hmm High 72.2%318.9
Pat_A03G243000.m1
Pogostemon cablinTerpenoid · MDS_IspFblast+hmm High 73.3%318.9
AJRE_c83109_g1_i1_len_971
Ajuga reptansTerpenoid · MDS_IspFblast+hmm High 75.5%318.8
evm.model.ptg000005l.1291
Isodon serraTerpenoid · MDS_IspFblast+hmm High 76.1%318.8
COTO_c26850_g1_i1_len_1221
Congea tomentosaTerpenoid · MDS_IspFblast+hmm High 76.4%318.6
Sbai4A172T41.1
Scutellaria baicalensisTerpenoid · MDS_IspFblast+hmm High 76.6%318.6
WEFR_c30706_g1_i1_len_1197
Westringia fruticosaTerpenoid · MDS_IspFblast+hmm High 70.6%318.5
AJRE_c33813_g1_i1_len_951
Ajuga reptansTerpenoid · MDS_IspFblast+hmm High 72.5%318.3