LamiOmicsDB Lamiaceae Multi-Omics Database
v1 808 species · 3 phylogenies · 6,313 sequences

Pathway-family scientific record

MVD

MVD enzyme-family module

This module includes PlantSME enzyme-family assignments and traceable candidate protein identifiers from genome-derived or transcriptome-derived protein sets.

Browse candidatesCompare speciesCSV
Stable locus plantsmeTerpenoid biosynthesis
Public candidate IDs
408
Species with candidates
80
Species with assignments
80
Source assignments
408
Gene-tree candidates
0
Motif candidates
0

Evidence profile

Available evidence layers

◆Candidate identifiers408 public species-linked identifiers can be inspected.
GTGene-tree workflow0 comparable source candidates; 0 high-confidence source calls.
MMotif-screen proxy0 motif-screen candidates; 0 with all required motif proxies.
100 kbLocal clustering proxy0 clusters across 0 species; maximum cluster size 0.

Comparative signature

Lamiaceae comparison fields

Rate delta
Not calculated
Prevalence delta
Not calculated
Comparable source
PlantSME family assignments
Comparable source count
408
Public candidate count
408
Evidence mode
plantsme

Species coverage

Assignment and locus coverage by species

Source family counts and public candidate identifiers are shown in separate columns.

SpeciesEvidence stateSource countCandidate IDsExpression
Pogostemon cablinLamioideae · Pogostemon Stable locus 1919 Available
Salvia splendensNepetoideae · Salvia Stable locus 1818 No matrix
Ocimum basilicumNepetoideae · Ocimum Stable locus 1313 Available
Nepeta catariaNepetoideae · Nepeta Stable locus 1212 Available
Phlomoides rotataLamioideae · Phlomoides Stable locus 1212 No matrix
Salvia rosmarinusNepetoideae · Salvia Stable locus 1111 Available
Prunella vulgarisNepetoideae · Prunella Stable locus 99 No matrix
Teucrium chamaedrysAjugoideae · Teucrium Stable locus 99 No matrix
Teucrium marumAjugoideae · Teucrium Stable locus 99 No matrix
Perilla frutescensNepetoideae · Perilla Stable locus 88 No matrix
Clinopodium barosmumNepetoideae · Clinopodium Stable locus 77 No matrix
Cornutia pyramidataPremnoideae · Cornutia Stable locus 77 No matrix
Hyssopus officinalisNepetoideae · Hyssopus Stable locus 77 No matrix
Rotheca myricoidesAjugoideae · Rotheca Stable locus 77 No matrix
Ajuga decumbensAjugoideae · Ajuga Stable locus 66 No matrix
Callicarpa americanaCallicarpoideae · Callicarpa Stable locus 66 No matrix
Elsholtzia splendensNepetoideae · Elsholtzia Stable locus 66 No matrix
Nepeta mussiniiNepetoideae · Nepeta Stable locus 66 Available
Stenogyne calaminthoidesLamioideae · Stenogyne Stable locus 66 No matrix
Teucrium canadenseAjugoideae · Teucrium Stable locus 66 No matrix
Callicarpa nudifloraCallicarpoideae · Callicarpa Stable locus 55 No matrix
Clerodendrum bungeiAjugoideae · Clerodendrum Stable locus 55 No matrix
Collinsonia canadensisNepetoideae · Collinsonia Stable locus 55 No matrix
Congea tomentosaSymphorematoideae · Congea Stable locus 55 No matrix
Gmelina philippensisPremnoideae · Gmelina Stable locus 55 No matrix
Hyptis suaveolensNepetoideae · Hyptis Stable locus 55 No matrix
Ocimum tenuiflorumNepetoideae · Ocimum Stable locus 55 No matrix
Origanum majoranaNepetoideae · Origanum Stable locus 55 No matrix
Phlomis fruticosaLamioideae · Phlomis Stable locus 55 No matrix
Plectranthus barbatusNepetoideae · Plectranthus Stable locus 55 No matrix
Premna microphyllaPremnoideae · Premna Stable locus 55 No matrix
Salvia divinorumNepetoideae · Salvia Stable locus 55 No matrix
Salvia miltiorrhizaNepetoideae · Salvia Stable locus 55 Available
Tectona grandisTectonoideae · Tectona Stable locus 55 Available
Vitex agnus-castusViticoideae · Vitex Stable locus 55 No matrix
Agastache rugosaNepetoideae · Agastache Stable locus 44 No matrix
Ajuga reptansAjugoideae · Ajuga Stable locus 44 No matrix
Glechoma longitubaNepetoideae · Glechoma Stable locus 44 No matrix
Holmskioldia sanguineaScutellarioideae · Holmskioldia Stable locus 44 No matrix
Lavandula angustifoliaNepetoideae · Lavandula Stable locus 44 No matrix
Marmoritis complanataNepetoideae · Marmoritis Stable locus 44 No matrix
Marrubium vulgareLamioideae · Marrubium Stable locus 44 No matrix
Mosla chinensisNepetoideae · Mosla Stable locus 44 No matrix
Mosla soochowensisNepetoideae · Mosla Stable locus 44 No matrix
Perilla citriodoraNepetoideae · Perilla Stable locus 44 No matrix
Perilla frutescens var. hirtellaNepetoideae · Perilla Stable locus 44 No matrix
Petraeovitex bambusetoriumPeronematoideae · Petraeovitex Stable locus 44 No matrix
Thymus vulgarisNepetoideae · Thymus Stable locus 44 No matrix
Westringia fruticosaProstantheroideae · Westringia Stable locus 44 No matrix
Agastache foeniculumNepetoideae · Agastache Stable locus 33 No matrix
Ballota pseudodictamnusLamioideae · Ballota Stable locus 33 No matrix
Clinopodium gracileNepetoideae · Clinopodium Stable locus 33 No matrix
Dracocephalum rupestreNepetoideae · Dracocephalum Stable locus 33 No matrix
Drepanocaryum sewerzowiiNepetoideae · Drepanocaryum Stable locus 33 No matrix
Glechoma hederaceaNepetoideae · Glechoma Stable locus 33 No matrix
Isodon lophanthoidesNepetoideae · Isodon Stable locus 33 No matrix
Isodon serraNepetoideae · Isodon Stable locus 33 No matrix
Lamium albumLamioideae · Lamium Stable locus 33 No matrix
Leonotis leonurusLamioideae · Leonotis Stable locus 33 No matrix
Leonurus cardiacaLamioideae · Leonurus Stable locus 33 No matrix
Leonurus japonicusLamioideae · Leonurus Stable locus 33 No matrix
Leonurus sibiricusLamioideae · Leonurus Stable locus 33 No matrix
Lycopus americanusNepetoideae · Lycopus Stable locus 33 No matrix
Melissa officinalisNepetoideae · Melissa Stable locus 33 No matrix
Mentha longifoliaNepetoideae · Mentha Stable locus 33 Available
Mentha spicataNepetoideae · Mentha Stable locus 33 No matrix
Mentha x piperitaNepetoideae · Mentha Stable locus 33 No matrix
Monarda didymaNepetoideae · Monarda Stable locus 33 No matrix
Origanum vulgareNepetoideae · Origanum Stable locus 33 No matrix
Perovskia atriplicifoliaNepetoideae · Perovskia Stable locus 33 No matrix
Prostanthera lasianthosProstantheroideae · Prostanthera Stable locus 33 No matrix
Salvia bowleyanaNepetoideae · Salvia Stable locus 33 No matrix
Salvia hispanicaNepetoideae · Salvia Stable locus 33 No matrix
Salvia officinalisNepetoideae · Salvia Stable locus 33 No matrix
Salvia sclareaNepetoideae · Salvia Stable locus 33 No matrix
Schizonepeta tenuifoliaNepetoideae · Schizonepeta Stable locus 33 No matrix
Scutellaria baicalensisScutellarioideae · Scutellaria Stable locus 33 No matrix
Scutellaria barbataScutellarioideae · Scutellaria Stable locus 33 No matrix
Stachys officinalisLamioideae · Stachys Stable locus 33 No matrix
Thymus quinquecostatusNepetoideae · Thymus Stable locus 33 No matrix

Candidate records

Traceable candidate identifiers

Filter and inspect candidate identifiers for this family.

Clear
Candidate IDSpeciesPathway / familyEvidenceConfidenceIdentityHMM score
XP_042036391.1
Salvia splendensTerpenoid · MVDblast Medium 30.9%—
XP_042036392.1
Salvia splendensTerpenoid · MVDblast Medium 30.9%—
XP_042043189.1
Salvia splendensTerpenoid · MVDblast Medium 61.1%—
XP_047939229.1
Salvia hispanicaTerpenoid · MVDblast Medium 59.1%—
XP_047975567.1
Salvia hispanicaTerpenoid · MVDblast Medium 61.5%—
evm.model.Chr08.772
Callicarpa nudifloraTerpenoid · MVDblast Medium 58.5%—
evm.model.Chr15.343
Callicarpa nudifloraTerpenoid · MVDblast Medium 57.2%—
evm.model.Chr17.306
Callicarpa nudifloraTerpenoid · MVDblast Medium 63.3%—
evm.model.LG02.1785
Clinopodium barosmumTerpenoid · MVDblast Medium 59.3%—
evm.model.LG03.554
Clinopodium barosmumTerpenoid · MVDblast Medium 57.0%—
evm.model.LG07.1007
Clinopodium barosmumTerpenoid · MVDblast Medium 59.0%—
evm.model.LG21.573
Clinopodium barosmumTerpenoid · MVDblast Medium 57.8%—
evm.model.chr11.1890
Prunella vulgarisTerpenoid · MVDblast Medium 58.1%—
evm.model.chr9.1966
Prunella vulgarisTerpenoid · MVDblast Medium 58.6%—
evm.model.chr9.371
Prunella vulgarisTerpenoid · MVDblast Medium 61.5%—
evm.model.chr9.375
Prunella vulgarisTerpenoid · MVDblast Medium 61.5%—
evm.model.ptg000002l.1050
Isodon serraTerpenoid · MVDblast Medium 62.4%—
evm.model.ptg000016l.597
Isodon serraTerpenoid · MVDblast Medium 62.4%—
g10509.t1
Nepeta catariaTerpenoid · MVDblast Medium 60.9%—
g10509.t1.1.5b2d4a30
Nepeta catariaTerpenoid · MVDblast Medium 63.9%—
g10509.t1.1.5b2d4a30.1.5b2d6af1
Nepeta catariaTerpenoid · MVDblast Medium 60.9%—
g10587.t1
Hyssopus officinalisTerpenoid · MVDblast Medium 64.0%—
g10587.t1.1.5b43bdc5
Hyssopus officinalisTerpenoid · MVDblast Medium 57.1%—
g12169.t1
Salvia sclareaTerpenoid · MVDblast Medium 60.5%—
g14006.t1
Nepeta catariaTerpenoid · MVDblast Medium 61.3%—
g14006.t1.1.5b2d4a33
Nepeta catariaTerpenoid · MVDblast Medium 61.9%—
g1403.t1
Ajuga decumbensTerpenoid · MVDblast Medium 64.3%—
g1403.t2
Ajuga decumbensTerpenoid · MVDblast Medium 64.3%—
g2348.t1
Nepeta mussiniiTerpenoid · MVDblast Medium 60.1%—
g24131.t1
Nepeta mussiniiTerpenoid · MVDblast Medium 58.2%—
g24131.t1.1.5b2c7c7c
Nepeta mussiniiTerpenoid · MVDblast Medium 57.7%—
g24131.t1.2.5b2c7c7c
Nepeta mussiniiTerpenoid · MVDblast Medium 58.2%—
g29871.t1
Ajuga decumbensTerpenoid · MVDblast Medium 60.5%—
g3863.t1
Salvia sclareaTerpenoid · MVDblast Medium 61.9%—
g39734.t1
Hyssopus officinalisTerpenoid · MVDblast Medium 57.0%—
g42764.t1
Nepeta catariaTerpenoid · MVDblast Medium 57.7%—
g52724.t1
Nepeta catariaTerpenoid · MVDblast Medium 57.7%—
g52724.t1.1.5b2d4a2c
Nepeta catariaTerpenoid · MVDblast Medium 58.3%—
ocimum_sanctum_Ote100027420141
Ocimum tenuiflorumTerpenoid · MVDblast Medium 59.5%—
ocimum_sanctum_Ote100176870051
Ocimum tenuiflorumTerpenoid · MVDblast Medium 50.4%—
ocimum_sanctum_Ote100230600151
Ocimum tenuiflorumTerpenoid · MVDblast Medium 63.6%—
origanum_vulgare_123442.g1.t1
Origanum vulgareTerpenoid · MVDblast Medium 59.5%—
origanum_vulgare_126349.g1.t1
Origanum vulgareTerpenoid · MVDblast Medium 70.5%—
rna-gnl|WGS:QFCC|chr04_02147206_02150871.mrna1
Perilla frutescensTerpenoid · MVDblast Medium 57.6%—
rna-gnl|WGS:QFCC|chr06_15095066_15099085.mrna1
Perilla frutescensTerpenoid · MVDblast Medium 57.6%—
rna-gnl|WGS:QFCC|chr11_33420877_33425232.mrna1
Perilla frutescensTerpenoid · MVDblast Medium 64.7%—
rna-gnl|WGS:QFCC|chr12_26558998_26563251.mrna1
Perilla frutescensTerpenoid · MVDblast Medium 61.6%—
rna-gnl|WGS:QIYW|chr03_66341385_66344893.mrna1
Perilla citriodoraTerpenoid · MVDblast Medium 56.9%—
rna-gnl|WGS:QIYW|chr03_66341385_66344893.mrna1
Perilla frutescens var. hirtellaTerpenoid · MVDblast Medium 56.9%—
rna-gnl|WGS:QIYW|chr08_25663706_25667963.mrna1
Perilla citriodoraTerpenoid · MVDblast Medium 61.6%—