Pathway-family scientific record
PMK
PMK enzyme-family module
This module includes PlantSME enzyme-family assignments and traceable candidate protein identifiers from genome-derived or transcriptome-derived protein sets.
Stable locus
plantsmeTerpenoid biosynthesis
- Public candidate IDs
- 5
- Species with candidates
- 5
- Species with assignments
- 5
- Source assignments
- 5
- Gene-tree candidates
- 0
- Motif candidates
- 0
Evidence profile
Available evidence layers
◆Candidate identifiers5 public species-linked identifiers can be inspected.
GTGene-tree workflow0 comparable source candidates; 0 high-confidence source calls.
MMotif-screen proxy0 motif-screen candidates; 0 with all required motif proxies.
100 kbLocal clustering proxy0 clusters across 0 species; maximum cluster size 0.
Comparative signature
Lamiaceae comparison fields
- Rate delta
- Not calculated
- Prevalence delta
- Not calculated
- Comparable source
- PlantSME family assignments
- Comparable source count
- 5
- Public candidate count
- 5
- Evidence mode
- plantsme
Species coverage
Assignment and locus coverage by species
Source family counts and public candidate identifiers are shown in separate columns.
| Species | Evidence state | Source count | Candidate IDs | Expression | |
|---|---|---|---|---|---|
| Cornutia pyramidataPremnoideae · Cornutia | Stable locus | 1 | 1 | No matrix | |
| Elsholtzia splendensNepetoideae · Elsholtzia | Stable locus | 1 | 1 | No matrix | |
| Petraeovitex bambusetoriumPeronematoideae · Petraeovitex | Stable locus | 1 | 1 | No matrix | |
| Pogostemon cablinLamioideae · Pogostemon | Stable locus | 1 | 1 | Available | |
| Thymus vulgarisNepetoideae · Thymus | Stable locus | 1 | 1 | No matrix |
Candidate records
Traceable candidate identifiers
Filter and inspect candidate identifiers for this family.
| Candidate ID | Species | Pathway / family | Evidence | Confidence | Identity | HMM score | |
|---|---|---|---|---|---|---|---|
| Pogostemon cablin | Terpenoid · PMK | blast+hmm | Medium | 67.1% | 74.3 | ||
| Cornutia pyramidata | Terpenoid · PMK | blast | Medium | 56.5% | — | ||
| Thymus vulgaris | Terpenoid · PMK | hmm | Medium | — | 31.6 | ||
| Petraeovitex bambusetorium | Terpenoid · PMK | hmm | Medium | — | 19.3 | ||
| Elsholtzia splendens | Terpenoid · PMK | hmm | Medium | — | 17.3 |