LamiOmicsDB Lamiaceae Multi-Omics Database
v1 808 species · 3 phylogenies · 6,313 sequences

Pathway-family scientific record

TPS

Terpene synthase family

This module includes PlantSME enzyme-family assignments and traceable candidate protein identifiers from genome-derived or transcriptome-derived protein sets.

Browse candidatesCompare speciesCSV
Stable locus plantsmeTerpenoid biosynthesis
Public candidate IDs
4,886
Species with candidates
80
Species with assignments
80
Source assignments
7,439
Gene-tree candidates
0
Motif candidates
1,428

Evidence profile

Available evidence layers

◆Candidate identifiers4,886 public species-linked identifiers can be inspected.
GTGene-tree workflow0 comparable source candidates; 0 high-confidence source calls.
MMotif-screen proxy1,428 motif-screen candidates; 744 with all required motif proxies.
100 kbLocal clustering proxy133 clusters across 4 species; maximum cluster size 14.

Comparative signature

Lamiaceae comparison fields

Rate delta
0.669 · higher in Lamiaceae
Prevalence delta
0
Comparable source
PlantSME family assignments
Comparable source count
7,439
Public candidate count
4,886
Evidence mode
plantsme

Species coverage

Assignment and locus coverage by species

Source family counts and public candidate identifiers are shown in separate columns.

SpeciesEvidence stateSource countCandidate IDsExpression
Ocimum basilicumNepetoideae · Ocimum Stable locus 337320 Available
Pogostemon cablinLamioideae · Pogostemon Stable locus 351313 Available
Callicarpa americanaCallicarpoideae · Callicarpa Stable locus 132159 No matrix
Nepeta catariaNepetoideae · Nepeta Stable locus 145125 Available
Nepeta mussiniiNepetoideae · Nepeta Stable locus 114118 Available
Perilla citriodoraNepetoideae · Perilla Stable locus 75115 No matrix
Salvia rosmarinusNepetoideae · Salvia Stable locus 65111 Available
Salvia miltiorrhizaNepetoideae · Salvia Stable locus 70107 Available
Mentha longifoliaNepetoideae · Mentha Stable locus 61100 Available
Tectona grandisTectonoideae · Tectona Stable locus 9686 Available
Origanum vulgareNepetoideae · Origanum Stable locus 9380 No matrix
Salvia bowleyanaNepetoideae · Salvia Stable locus 7266 No matrix
Salvia hispanicaNepetoideae · Salvia Stable locus 53750 No matrix
Teucrium chamaedrysAjugoideae · Teucrium Stable locus 35450 No matrix
Salvia splendensNepetoideae · Salvia Stable locus 27750 No matrix
Teucrium marumAjugoideae · Teucrium Stable locus 20450 No matrix
Dracocephalum rupestreNepetoideae · Dracocephalum Stable locus 20050 No matrix
Glechoma longitubaNepetoideae · Glechoma Stable locus 17350 No matrix
Hyssopus officinalisNepetoideae · Hyssopus Stable locus 17050 No matrix
Isodon lophanthoidesNepetoideae · Isodon Stable locus 14050 No matrix
Salvia divinorumNepetoideae · Salvia Stable locus 12350 No matrix
Perilla frutescensNepetoideae · Perilla Stable locus 11750 No matrix
Stenogyne calaminthoidesLamioideae · Stenogyne Stable locus 11650 No matrix
Isodon serraNepetoideae · Isodon Stable locus 11350 No matrix
Elsholtzia splendensNepetoideae · Elsholtzia Stable locus 10850 No matrix
Ocimum tenuiflorumNepetoideae · Ocimum Stable locus 10450 No matrix
Mosla chinensisNepetoideae · Mosla Stable locus 9250 No matrix
Marmoritis complanataNepetoideae · Marmoritis Stable locus 8350 No matrix
Mentha x piperitaNepetoideae · Mentha Stable locus 8350 No matrix
Phlomoides rotataLamioideae · Phlomoides Stable locus 8250 No matrix
Schizonepeta tenuifoliaNepetoideae · Schizonepeta Stable locus 8250 No matrix
Vitex agnus-castusViticoideae · Vitex Stable locus 8250 No matrix
Callicarpa nudifloraCallicarpoideae · Callicarpa Stable locus 8050 No matrix
Thymus quinquecostatusNepetoideae · Thymus Stable locus 7850 No matrix
Glechoma hederaceaNepetoideae · Glechoma Stable locus 7750 No matrix
Perilla frutescens var. hirtellaNepetoideae · Perilla Stable locus 7550 No matrix
Mosla soochowensisNepetoideae · Mosla Stable locus 7250 No matrix
Prunella vulgarisNepetoideae · Prunella Stable locus 7250 No matrix
Clinopodium gracileNepetoideae · Clinopodium Stable locus 7150 No matrix
Hyptis suaveolensNepetoideae · Hyptis Stable locus 7150 No matrix
Plectranthus barbatusNepetoideae · Plectranthus Stable locus 7150 No matrix
Agastache rugosaNepetoideae · Agastache Stable locus 6950 No matrix
Clinopodium barosmumNepetoideae · Clinopodium Stable locus 6850 No matrix
Stachys officinalisLamioideae · Stachys Stable locus 6850 No matrix
Ballota pseudodictamnusLamioideae · Ballota Stable locus 6450 No matrix
Scutellaria baicalensisScutellarioideae · Scutellaria Stable locus 6450 No matrix
Lamium albumLamioideae · Lamium Stable locus 6350 No matrix
Salvia officinalisNepetoideae · Salvia Stable locus 6250 No matrix
Leonurus japonicusLamioideae · Leonurus Stable locus 6150 No matrix
Mentha spicataNepetoideae · Mentha Stable locus 6150 No matrix
Ajuga decumbensAjugoideae · Ajuga Stable locus 6050 No matrix
Premna microphyllaPremnoideae · Premna Stable locus 6050 No matrix
Leonurus sibiricusLamioideae · Leonurus Stable locus 5850 No matrix
Phlomis fruticosaLamioideae · Phlomis Stable locus 5650 No matrix
Leonurus cardiacaLamioideae · Leonurus Stable locus 5550 No matrix
Cornutia pyramidataPremnoideae · Cornutia Stable locus 5450 No matrix
Drepanocaryum sewerzowiiNepetoideae · Drepanocaryum Stable locus 5450 No matrix
Origanum majoranaNepetoideae · Origanum Stable locus 5450 No matrix
Lavandula angustifoliaNepetoideae · Lavandula Stable locus 5250 No matrix
Leonotis leonurusLamioideae · Leonotis Stable locus 5250 No matrix
Rotheca myricoidesAjugoideae · Rotheca Stable locus 4848 No matrix
Melissa officinalisNepetoideae · Melissa Stable locus 4747 No matrix
Prostanthera lasianthosProstantheroideae · Prostanthera Stable locus 4747 No matrix
Ajuga reptansAjugoideae · Ajuga Stable locus 4646 No matrix
Gmelina philippensisPremnoideae · Gmelina Stable locus 4646 No matrix
Scutellaria barbataScutellarioideae · Scutellaria Stable locus 4646 No matrix
Perovskia atriplicifoliaNepetoideae · Perovskia Stable locus 4545 No matrix
Thymus vulgarisNepetoideae · Thymus Stable locus 4545 No matrix
Collinsonia canadensisNepetoideae · Collinsonia Stable locus 4242 No matrix
Monarda didymaNepetoideae · Monarda Stable locus 4141 No matrix
Holmskioldia sanguineaScutellarioideae · Holmskioldia Stable locus 4040 No matrix
Marrubium vulgareLamioideae · Marrubium Stable locus 3939 No matrix
Petraeovitex bambusetoriumPeronematoideae · Petraeovitex Stable locus 3838 No matrix
Clerodendrum bungeiAjugoideae · Clerodendrum Stable locus 3737 No matrix
Lycopus americanusNepetoideae · Lycopus Stable locus 3737 No matrix
Teucrium canadenseAjugoideae · Teucrium Stable locus 3636 No matrix
Agastache foeniculumNepetoideae · Agastache Stable locus 3434 No matrix
Congea tomentosaSymphorematoideae · Congea Stable locus 3333 No matrix
Westringia fruticosaProstantheroideae · Westringia Stable locus 3030 No matrix
Salvia sclareaNepetoideae · Salvia Stable locus 99 No matrix

Candidate records

Traceable candidate identifiers

Filter and inspect candidate identifiers for this family.

Clear
Candidate IDSpeciesPathway / familyEvidenceConfidenceIdentityHMM score
evm.model.ptg000007l.105
Isodon serraTerpenoid · TPSblast+hmm High 45.8%570.9
Ms_c008g02013.1
Mosla soochowensisTerpenoid · TPSblast+hmm High 41.8%570.7
Teum.06G023520.1
Teucrium marumTerpenoid · TPSblast+hmm High 57.3%570.5
Ms_c009g02802.1
Mosla soochowensisTerpenoid · TPSblast+hmm High 41.4%570.4
5:ILLG10G59.25m1
Isodon lophanthoidesTerpenoid · TPSblast+hmm High 58.4%570.3
g45686.t1
Nepeta catariaTerpenoid · TPSblast+hmm High 41.5%570.1
GWHPBJVA023023
Thymus quinquecostatusTerpenoid · TPSblast+hmm High 45.0%570.0
g38526.t1_g38527.t1
Hyssopus officinalisTerpenoid · TPSblast+hmm High 41.7%569.8
KAL8522791.1
Phlomoides rotataTerpenoid · TPSblast+hmm High 51.6%569.5
Ms_c008g02025.1
Mosla soochowensisTerpenoid · TPSblast+hmm High 41.8%569.5
rna-gnl|WGS:QFCC|chr12_43356176_43358956.mrna1
Perilla frutescensTerpenoid · TPSblast+hmm High 41.3%569.5
g38529.t1.1.5b43bdbd
Hyssopus officinalisTerpenoid · TPSblast+hmm High 41.0%569.3
Mlonscaffold_2_length_455260290077720.1.v1.326
Mentha longifoliaTerpenoid · TPSblast+hmm High 40.1%569.1
GWHPBJVA008813
Thymus quinquecostatusTerpenoid · TPSblast+hmm High 65.4%569.0
tectona_grandis_Tg18g10980.t1
Tectona grandisTerpenoid · TPSblast+hmm High 44.7%568.7
AJRE_c33748_g1_i2_len_2419
Ajuga reptansTerpenoid · TPSblast+hmm High 68.7%568.4
rna-gnl|WGS:QIYW|PC00002796_00126841_00130708.mrna1
Perilla citriodoraTerpenoid · TPSblast+hmm High 52.1%568.4
rna-gnl|WGS:QIYW|PC00002796_00126841_00130708.mrna1
Perilla frutescens var. hirtellaTerpenoid · TPSblast+hmm High 52.1%568.4
g426.t1
Nepeta catariaTerpenoid · TPSblast+hmm High 61.5%568.0
SAOF_c35664_g1_i3_len_1537
Salvia officinalisTerpenoid · TPSblast+hmm High 64.8%567.9
Sch000027338
Schizonepeta tenuifoliaTerpenoid · TPSblast+hmm High 41.4%567.9
evm.model.Chr07.1127
Callicarpa nudifloraTerpenoid · TPSblast+hmm High 46.0%567.8
g26133.t1
Nepeta catariaTerpenoid · TPSblast+hmm High 62.0%567.7
g26133.t1.1.5b2d4a29
Nepeta catariaTerpenoid · TPSblast+hmm High 62.0%567.7
Roff27960366120
Salvia rosmarinusTerpenoid · TPSblast+hmm High 40.9%567.4
STOF_c54544_g1_i1_len_2274
Stachys officinalisTerpenoid · TPSblast+hmm High 65.7%567.3
GWHPBJVA001251
Thymus quinquecostatusTerpenoid · TPSblast+hmm High 43.0%567.2
evm.model.ptg000011l.2252
Isodon serraTerpenoid · TPSblast+hmm High 43.4%566.7
Ms_c003g00215.1
Mosla soochowensisTerpenoid · TPSblast+hmm High 40.8%566.3
rna-gnl|WGS:QFCC|chr13_10773117_10775627.mrna1
Perilla frutescensTerpenoid · TPSblast+hmm High 43.4%566.3
KAL1543029.1
Salvia divinorumTerpenoid · TPSblast+hmm High 39.8%566.2
rna-gnl|WGS:QFCC|chr11_09447547_09454147.mrna1
Perilla frutescensTerpenoid · TPSblast+hmm High 56.7%566.1
Mc8g02360.1
Mosla chinensisTerpenoid · TPSblast+hmm High 43.3%565.8
rna-gnl|WGS:QIYW|chr07_10541979_10544469.mrna1
Perilla citriodoraTerpenoid · TPSblast+hmm High 44.4%565.5
rna-gnl|WGS:QIYW|chr07_10541979_10544469.mrna1
Perilla frutescens var. hirtellaTerpenoid · TPSblast+hmm High 44.4%565.5
KAL1542974.1
Salvia divinorumTerpenoid · TPSblast+hmm High 41.0%565.3
Sch000028051
Schizonepeta tenuifoliaTerpenoid · TPSblast+hmm High 40.0%565.3
g36554.t1
Nepeta catariaTerpenoid · TPSblast+hmm High 55.6%565.3
evm.model.Chr03.93
Callicarpa nudifloraTerpenoid · TPSblast+hmm High 70.1%565.2
Mc_c01g00790.1
Mosla chinensisTerpenoid · TPSblast+hmm High 48.4%564.7
ocimum_sanctum_Ote100033670041
Ocimum tenuiflorumTerpenoid · TPSblast+hmm High 41.6%564.7
KAL8545674.1
Phlomoides rotataTerpenoid · TPSblast+hmm High 41.2%564.4
evm.model.chr8.237
Prunella vulgarisTerpenoid · TPSblast+hmm High 41.7%564.2
g26898.t1.3.5b2d4a2a.1.5b2d6aea
Nepeta catariaTerpenoid · TPSblast+hmm High 69.5%564.2
MEOF_c21549_g1_i8_len_2109
Melissa officinalisTerpenoid · TPSblast+hmm High 69.7%564.1
GLHE_c64929_g1_i1_len_1836
Glechoma hederaceaTerpenoid · TPSblast+hmm High 69.3%564.0
Sch000025070
Schizonepeta tenuifoliaTerpenoid · TPSblast+hmm High 40.7%564.0
g14013.t1
Nepeta mussiniiTerpenoid · TPSblast+hmm High 65.6%563.8
Teum.05G027210.9
Teucrium marumTerpenoid · TPSblast+hmm High 47.9%563.5
GWHPBJVA027857
Thymus quinquecostatusTerpenoid · TPSblast+hmm High 58.2%563.4