LamiOmicsDB Lamiaceae Multi-Omics Database
v1 808 species · 3 phylogenies · 6,313 sequences

Pathway-family scientific record

TPS

Terpene synthase family

This module includes PlantSME enzyme-family assignments and traceable candidate protein identifiers from genome-derived or transcriptome-derived protein sets.

Browse candidatesCompare speciesCSV
Stable locus plantsmeTerpenoid biosynthesis
Public candidate IDs
4,886
Species with candidates
80
Species with assignments
80
Source assignments
7,439
Gene-tree candidates
0
Motif candidates
1,428

Evidence profile

Available evidence layers

◆Candidate identifiers4,886 public species-linked identifiers can be inspected.
GTGene-tree workflow0 comparable source candidates; 0 high-confidence source calls.
MMotif-screen proxy1,428 motif-screen candidates; 744 with all required motif proxies.
100 kbLocal clustering proxy133 clusters across 4 species; maximum cluster size 14.

Comparative signature

Lamiaceae comparison fields

Rate delta
0.669 · higher in Lamiaceae
Prevalence delta
0
Comparable source
PlantSME family assignments
Comparable source count
7,439
Public candidate count
4,886
Evidence mode
plantsme

Species coverage

Assignment and locus coverage by species

Source family counts and public candidate identifiers are shown in separate columns.

SpeciesEvidence stateSource countCandidate IDsExpression
Ocimum basilicumNepetoideae · Ocimum Stable locus 337320 Available
Pogostemon cablinLamioideae · Pogostemon Stable locus 351313 Available
Callicarpa americanaCallicarpoideae · Callicarpa Stable locus 132159 No matrix
Nepeta catariaNepetoideae · Nepeta Stable locus 145125 Available
Nepeta mussiniiNepetoideae · Nepeta Stable locus 114118 Available
Perilla citriodoraNepetoideae · Perilla Stable locus 75115 No matrix
Salvia rosmarinusNepetoideae · Salvia Stable locus 65111 Available
Salvia miltiorrhizaNepetoideae · Salvia Stable locus 70107 Available
Mentha longifoliaNepetoideae · Mentha Stable locus 61100 Available
Tectona grandisTectonoideae · Tectona Stable locus 9686 Available
Origanum vulgareNepetoideae · Origanum Stable locus 9380 No matrix
Salvia bowleyanaNepetoideae · Salvia Stable locus 7266 No matrix
Salvia hispanicaNepetoideae · Salvia Stable locus 53750 No matrix
Teucrium chamaedrysAjugoideae · Teucrium Stable locus 35450 No matrix
Salvia splendensNepetoideae · Salvia Stable locus 27750 No matrix
Teucrium marumAjugoideae · Teucrium Stable locus 20450 No matrix
Dracocephalum rupestreNepetoideae · Dracocephalum Stable locus 20050 No matrix
Glechoma longitubaNepetoideae · Glechoma Stable locus 17350 No matrix
Hyssopus officinalisNepetoideae · Hyssopus Stable locus 17050 No matrix
Isodon lophanthoidesNepetoideae · Isodon Stable locus 14050 No matrix
Salvia divinorumNepetoideae · Salvia Stable locus 12350 No matrix
Perilla frutescensNepetoideae · Perilla Stable locus 11750 No matrix
Stenogyne calaminthoidesLamioideae · Stenogyne Stable locus 11650 No matrix
Isodon serraNepetoideae · Isodon Stable locus 11350 No matrix
Elsholtzia splendensNepetoideae · Elsholtzia Stable locus 10850 No matrix
Ocimum tenuiflorumNepetoideae · Ocimum Stable locus 10450 No matrix
Mosla chinensisNepetoideae · Mosla Stable locus 9250 No matrix
Marmoritis complanataNepetoideae · Marmoritis Stable locus 8350 No matrix
Mentha x piperitaNepetoideae · Mentha Stable locus 8350 No matrix
Phlomoides rotataLamioideae · Phlomoides Stable locus 8250 No matrix
Schizonepeta tenuifoliaNepetoideae · Schizonepeta Stable locus 8250 No matrix
Vitex agnus-castusViticoideae · Vitex Stable locus 8250 No matrix
Callicarpa nudifloraCallicarpoideae · Callicarpa Stable locus 8050 No matrix
Thymus quinquecostatusNepetoideae · Thymus Stable locus 7850 No matrix
Glechoma hederaceaNepetoideae · Glechoma Stable locus 7750 No matrix
Perilla frutescens var. hirtellaNepetoideae · Perilla Stable locus 7550 No matrix
Mosla soochowensisNepetoideae · Mosla Stable locus 7250 No matrix
Prunella vulgarisNepetoideae · Prunella Stable locus 7250 No matrix
Clinopodium gracileNepetoideae · Clinopodium Stable locus 7150 No matrix
Hyptis suaveolensNepetoideae · Hyptis Stable locus 7150 No matrix
Plectranthus barbatusNepetoideae · Plectranthus Stable locus 7150 No matrix
Agastache rugosaNepetoideae · Agastache Stable locus 6950 No matrix
Clinopodium barosmumNepetoideae · Clinopodium Stable locus 6850 No matrix
Stachys officinalisLamioideae · Stachys Stable locus 6850 No matrix
Ballota pseudodictamnusLamioideae · Ballota Stable locus 6450 No matrix
Scutellaria baicalensisScutellarioideae · Scutellaria Stable locus 6450 No matrix
Lamium albumLamioideae · Lamium Stable locus 6350 No matrix
Salvia officinalisNepetoideae · Salvia Stable locus 6250 No matrix
Leonurus japonicusLamioideae · Leonurus Stable locus 6150 No matrix
Mentha spicataNepetoideae · Mentha Stable locus 6150 No matrix
Ajuga decumbensAjugoideae · Ajuga Stable locus 6050 No matrix
Premna microphyllaPremnoideae · Premna Stable locus 6050 No matrix
Leonurus sibiricusLamioideae · Leonurus Stable locus 5850 No matrix
Phlomis fruticosaLamioideae · Phlomis Stable locus 5650 No matrix
Leonurus cardiacaLamioideae · Leonurus Stable locus 5550 No matrix
Cornutia pyramidataPremnoideae · Cornutia Stable locus 5450 No matrix
Drepanocaryum sewerzowiiNepetoideae · Drepanocaryum Stable locus 5450 No matrix
Origanum majoranaNepetoideae · Origanum Stable locus 5450 No matrix
Lavandula angustifoliaNepetoideae · Lavandula Stable locus 5250 No matrix
Leonotis leonurusLamioideae · Leonotis Stable locus 5250 No matrix
Rotheca myricoidesAjugoideae · Rotheca Stable locus 4848 No matrix
Melissa officinalisNepetoideae · Melissa Stable locus 4747 No matrix
Prostanthera lasianthosProstantheroideae · Prostanthera Stable locus 4747 No matrix
Ajuga reptansAjugoideae · Ajuga Stable locus 4646 No matrix
Gmelina philippensisPremnoideae · Gmelina Stable locus 4646 No matrix
Scutellaria barbataScutellarioideae · Scutellaria Stable locus 4646 No matrix
Perovskia atriplicifoliaNepetoideae · Perovskia Stable locus 4545 No matrix
Thymus vulgarisNepetoideae · Thymus Stable locus 4545 No matrix
Collinsonia canadensisNepetoideae · Collinsonia Stable locus 4242 No matrix
Monarda didymaNepetoideae · Monarda Stable locus 4141 No matrix
Holmskioldia sanguineaScutellarioideae · Holmskioldia Stable locus 4040 No matrix
Marrubium vulgareLamioideae · Marrubium Stable locus 3939 No matrix
Petraeovitex bambusetoriumPeronematoideae · Petraeovitex Stable locus 3838 No matrix
Clerodendrum bungeiAjugoideae · Clerodendrum Stable locus 3737 No matrix
Lycopus americanusNepetoideae · Lycopus Stable locus 3737 No matrix
Teucrium canadenseAjugoideae · Teucrium Stable locus 3636 No matrix
Agastache foeniculumNepetoideae · Agastache Stable locus 3434 No matrix
Congea tomentosaSymphorematoideae · Congea Stable locus 3333 No matrix
Westringia fruticosaProstantheroideae · Westringia Stable locus 3030 No matrix
Salvia sclareaNepetoideae · Salvia Stable locus 99 No matrix

Candidate records

Traceable candidate identifiers

Filter and inspect candidate identifiers for this family.

Clear
Candidate IDSpeciesPathway / familyEvidenceConfidenceIdentityHMM score
GWHPBJVA009605
Thymus quinquecostatusTerpenoid · TPSblast+hmm High 55.3%694.7
MACO_g6452.t1
Marmoritis complanataTerpenoid · TPSblast+hmm High 78.0%694.7
Sbow06G0043780.1
Salvia bowleyanaTerpenoid · TPSblast+hmm High 75.0%694.7
COPY_c48708_g1_i1_len_2019
Cornutia pyramidataTerpenoid · TPSblast+hmm High 58.6%694.6
tectona_grandis_Tg09g01750.t1
Tectona grandisTerpenoid · TPSblast+hmm High 63.5%694.6
COCA_c59126_g1_i1_len_2152
Collinsonia canadensisTerpenoid · TPSblast+hmm High 91.2%694.5
LECA_c30527_g1_i2_len_1866
Leonurus cardiacaTerpenoid · TPSblast+hmm High 66.4%694.5
XP_042036505.1
Salvia splendensTerpenoid · TPSblast+hmm High 64.4%694.5
g19440.t1
Hyssopus officinalisTerpenoid · TPSblast+hmm High 54.6%694.4
tectona_grandis_Tg04g11550.t1
Tectona grandisTerpenoid · TPSblast+hmm High 58.7%694.4
Clgra_027099-T1
Clinopodium gracileTerpenoid · TPSblast+hmm High 54.2%694.3
g3973.t1
Hyssopus officinalisTerpenoid · TPSblast+hmm High 74.0%694.3
LAAL_c28654_g1_i4_len_1900
Lamium albumTerpenoid · TPSblast+hmm High 51.8%694.2
rna-gnl|WGS:QFCC|chr06_00412675_00417186.mrna1
Perilla frutescensTerpenoid · TPSblast+hmm High 72.4%694.1
XP_047947370.1
Salvia hispanicaTerpenoid · TPSblast+hmm High 53.4%693.9
rna-gnl|WGS:QFCC|chr03_04778327_04785498.mrna1
Perilla frutescensTerpenoid · TPSblast+hmm High 85.6%693.8
Sch000025235
Schizonepeta tenuifoliaTerpenoid · TPSblast+hmm High 52.3%693.7
Ms_c006g00143.1
Mosla soochowensisTerpenoid · TPSblast+hmm High 69.3%693.3
Sbow04G0047500.1
Salvia bowleyanaTerpenoid · TPSblast+hmm High 66.8%693.3
Lj5g17150.1
Leonurus japonicusTerpenoid · TPSblast+hmm High 52.2%693.1
Pat_A03G193900.m1
Pogostemon cablinTerpenoid · TPSblast+hmm High 55.0%693.1
XP_042063156.1
Salvia splendensTerpenoid · TPSblast+hmm High 53.1%693.1
Smil05G0000870.1.v1.484
Salvia miltiorrhizaTerpenoid · TPSblast+hmm High 55.4%693.0
BAPS_c18884_g1_i1_len_1821
Ballota pseudodictamnusTerpenoid · TPSblast+hmm High 66.6%692.9
PEAT_c33656_g1_i1_len_1801
Perovskia atriplicifoliaTerpenoid · TPSblast+hmm High 74.7%692.9
rna-gnl|WGS:QIYW|chr01_74991518_74998729.mrna1
Perilla citriodoraTerpenoid · TPSblast+hmm High 85.5%692.6
rna-gnl|WGS:QIYW|chr01_74991518_74998729.mrna1
Perilla frutescens var. hirtellaTerpenoid · TPSblast+hmm High 85.5%692.6
GWHPBJVA011866
Thymus quinquecostatusTerpenoid · TPSblast+hmm High 55.5%692.4
Roff10300045250
Salvia rosmarinusTerpenoid · TPSblast+hmm High 68.2%692.2
evm.model.ptg000011l.483
Isodon serraTerpenoid · TPSblast+hmm High 71.0%691.9
KAL8537022.1
Phlomoides rotataTerpenoid · TPSblast+hmm High 61.6%691.8
GWHPBJVA005418
Thymus quinquecostatusTerpenoid · TPSblast+hmm High 90.5%691.7
evm.model.Chr03.634
Callicarpa nudifloraTerpenoid · TPSblast+hmm High 72.1%691.3
tectona_grandis_Tg16g02120.t1
Tectona grandisTerpenoid · TPSblast+hmm High 59.6%691.3
Teucrium_chamaedrys__Tcha130266
Teucrium chamaedrysTerpenoid · TPSblast+hmm High 57.0%691.2
origanum_vulgare_111513.g3.t1
Origanum vulgareTerpenoid · TPSblast+hmm High 93.2%691.2
MEPI_c50159_g4_i3_len_1810
Mentha x piperitaTerpenoid · TPSblast+hmm High 53.6%691.1
Smil02G0002580.1.v1.484
Salvia miltiorrhizaTerpenoid · TPSblast+hmm High 75.0%690.9
Roff27430362810
Salvia rosmarinusTerpenoid · TPSblast+hmm High 73.2%690.8
evm.model.ptg000009l.772
Isodon serraTerpenoid · TPSblast+hmm High 66.2%690.6
Sch000009837
Schizonepeta tenuifoliaTerpenoid · TPSblast+hmm High 69.9%690.4
ORMA_c54111_g4_i1_len_2068
Origanum majoranaTerpenoid · TPSblast+hmm High 92.3%690.2
380969.g8.t1
Ocimum basilicumTerpenoid · TPSblast+hmm High 69.8%690.0
Mc5g02280.1
Mosla chinensisTerpenoid · TPSblast+hmm High 69.4%689.9
Mc5g02290.1
Mosla chinensisTerpenoid · TPSblast+hmm High 69.4%689.9
386161.g58.t1
Ocimum basilicumTerpenoid · TPSblast+hmm High 69.4%689.8
Pat_B03G183700.m1
Pogostemon cablinTerpenoid · TPSblast+hmm High 54.6%689.8
origanum_vulgare_948.g61.t1
Origanum vulgareTerpenoid · TPSblast+hmm High 97.7%689.8
Clgra_004398-T1
Clinopodium gracileTerpenoid · TPSblast+hmm High 78.4%689.7
PEBA_c37981_g1_i1_len_1815
Petraeovitex bambusetoriumTerpenoid · TPSblast+hmm High 59.0%689.6