Callicarpa nudiflora mitochondrial
Biopython GenomeDiagram 1.79; GenBank local location segments.
orf117a · PX091360.1 · 2,628–2,981 bp · −
mttB · PX091360.1 · 3,820–4,653 bp · −
nad1 · PX091360.1 · 329,682–330,066 bp · −
nad1 · PX091360.1 · 30,445–30,700 bp · −
sdh4 · PX091360.1 · 51,582–52,031 bp · −
cox3 · PX091360.1 · 51,959–52,756 bp · −
atp8 · PX091360.1 · 53,347–53,826 bp · −
trnK-UUU · PX091360.1 · 60,414–60,486 bp · −
rpl10 · PX091360.1 · 63,612–64,100 bp · −
nad5 · PX091360.1 · 238,960–240,528 bp · −
orf3 · PX091360.1 · 116,119–116,430 bp · −
trnS-GGA · PX091360.1 · 133,258–133,344 bp · −
trnD-GUC · PX091360.1 · 133,963–134,036 bp · −
cob · PX091360.1 · 149,129–150,334 bp · −
rps14 · PX091360.1 · 152,432–152,734 bp · −
rpl5 · PX091360.1 · 152,736–153,284 bp · −
rps10 · PX091360.1 · 154,928–156,045 bp · −
trnH-GUG · PX091360.1 · 364,021–364,094 bp · −
trnI-CAA · PX091360.1 · 369,961–370,035 bp · −
ccmC · PX091360.1 · 370,084–370,779 bp · −
trnfM-CAU · PX091360.1 · 393,779–393,852 bp · −
rrn26 · PX091360.1 · 394,061–397,472 bp · −
rrn5 · PX091360.1 · 436,028–436,143 bp · −
rrn18 · PX091360.1 · 436,316–438,008 bp · −
rps12 · PX091360.1 · 471,247–471,624 bp · −
nad3 · PX091360.1 · 471,673–472,029 bp · −
rpl2 · PX091360.1 · 497,035–498,015 bp · −
atp1 · PX091360.1 · 563,924–565,450 bp · −
nad1 · PX091360.1 · 252,052–253,629 bp · +
cox2 · PX091360.1 · 36,822–40,252 bp · +
ccmB · PX091360.1 · 62,690–63,310 bp · +
cox1 · PX091360.1 · 82,402–83,985 bp · +
nad5 · PX091360.1 · 115,924–118,222 bp · +
nad4 · PX091360.1 · 117,509–117,769 bp · +
nad4 · PX091360.1 · 141,773–145,122 bp · +
orf101 · PX091360.1 · 118,565–118,870 bp · +
orf182a · PX091360.1 · 184,040–184,495 bp · +
nad4L · PX091360.1 · 196,211–196,483 bp · +
atp4 · PX091360.1 · 196,657–197,253 bp · +
nad6 · PX091360.1 · 198,205–198,822 bp · +
trnW-CCA · PX091360.1 · 203,323–203,396 bp · +
rps13 · PX091360.1 · 250,748–251,098 bp · +
trnC-GCA · PX091360.1 · 259,907–259,977 bp · +
trnN-GUU · PX091360.1 · 262,087–262,158 bp · +
trnY-GUA · PX091360.1 · 262,873–262,955 bp · +
nad2 · PX091360.1 · 300,785–302,538 bp · +
nad2 · PX091360.1 · 263,481–267,290 bp · +
orf121 · PX091360.1 · 263,791–264,063 bp · +
trnE-UUC · PX091360.1 · 295,981–296,052 bp · +
trnS-GCU · PX091360.1 · 298,957–299,044 bp · +
trnF-GAA · PX091360.1 · 299,386–299,459 bp · +
trnP-UGG · PX091360.1 · 299,719–299,793 bp · +
sdh3 · PX091360.1 · 299,885–300,097 bp · +
trnS-UGA · PX091360.1 · 316,881–316,967 bp · +
trnI-CAU · PX091360.1 · 339,168–339,244 bp · +
ccmFC · PX091360.1 · 404,928–407,185 bp · +
trnM-CAU · PX091360.1 · 413,480–413,552 bp · +
trnG-GCC · PX091360.1 · 418,706–418,777 bp · +
trnQ-UUG · PX091360.1 · 421,894–421,965 bp · +
nad7 · PX091360.1 · 426,030–430,788 bp · +
nad9 · PX091360.1 · 450,286–450,858 bp · +
trnW-CCA · PX091360.1 · 451,500–451,573 bp · +
ccmFN · PX091360.1 · 478,836–480,569 bp · +
rps4 · PX091360.1 · 499,283–500,299 bp · +
rps3 · PX091360.1 · 503,012–504,133 bp · +
rpl16 · PX091360.1 · 504,060–504,527 bp · +
atp9 · PX091360.1 · 532,246–532,470 bp · +
atp6 · PX091360.1 · 553,875–554,738 bp · +
0 kb
48 kb
96 kb
144 kb
192 kb
240 kb
288 kb
336 kb
384 kb
432 kb
480 kb
528 kb
Callicarpa nudiflora
ANNOTATED MITOGENOME
PX091360.1
572,614 bp · 63 genes
Gene function
Other
NADH dehydrogenase
Cytochrome
ATP synthase
Transfer RNA
Ribosomal protein
Ribosomal RNA
0 143154 286307 429460 572614 bp
Forward strand 5′ → 3′
cox2 ccmB cox1 nad5 nad4 orf101 nad4 orf182a nad4L atp4 nad6 trnW-CCA rps13 nad1 trnC-GCA trnN-GUU trnY-GUA nad2 orf121 trnE-UUC trnS-GCU trnF-GAA trnP-UGG sdh3 nad2 trnS-UGA trnI-CAU ccmFC trnM-CAU trnG-GCC trnQ-UUG nad7 nad9 trnW-CCA ccmFN rps4 rps3 rpl16 atp9 atp6
orf117a mttB nad1 sdh4 cox3 atp8 trnK-UUU rpl10 orf3 trnS-GGA trnD-GUC cob rps14 rpl5 rps10 nad5 nad1 trnH-GUG trnI-CAA ccmC trnfM-CAU rrn26 rrn5 rrn18 rps12 nad3 rpl2 atp1
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. A circular layout does not establish a physical master-circle configuration. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
68 local segments
Gene Type Group Strand Start End Length
orf117a gene − 2628 2981 354 Locate
mttB gene − 3820 4653 834 Locate
nad1 gene − 30445 30700 256 Locate
cox2 gene + 36822 40252 3431 Locate
sdh4 gene − 51582 52031 450 Locate
cox3 gene − 51959 52756 798 Locate
atp8 gene − 53347 53826 480 Locate
trnK-UUU gene − 60414 60486 73 Locate
ccmB gene + 62690 63310 621 Locate
rpl10 gene − 63612 64100 489 Locate
cox1 gene + 82402 83985 1584 Locate
nad5 gene + 115924 118222 2299 Locate
orf3 gene − 116119 116430 312 Locate
nad4 gene + 117509 117769 261 Locate
orf101 gene + 118565 118870 306 Locate
trnS-GGA gene − 133258 133344 87 Locate
trnD-GUC gene − 133963 134036 74 Locate
nad4 gene + 141773 145122 3350 Locate
cob gene − 149129 150334 1206 Locate
rps14 gene − 152432 152734 303 Locate
rpl5 gene − 152736 153284 549 Locate
rps10 gene − 154928 156045 1118 Locate
orf182a gene + 184040 184495 456 Locate
nad4L gene + 196211 196483 273 Locate
atp4 gene + 196657 197253 597 Locate
nad6 gene + 198205 198822 618 Locate
trnW-CCA gene + 203323 203396 74 Locate
nad5 gene − 238960 240528 1569 Locate
rps13 gene + 250748 251098 351 Locate
nad1 gene + 252052 253629 1578 Locate
trnC-GCA gene + 259907 259977 71 Locate
trnN-GUU gene + 262087 262158 72 Locate
trnY-GUA gene + 262873 262955 83 Locate
nad2 gene + 263481 267290 3810 Locate
orf121 gene + 263791 264063 273 Locate
trnE-UUC gene + 295981 296052 72 Locate
trnS-GCU gene + 298957 299044 88 Locate
trnF-GAA gene + 299386 299459 74 Locate
trnP-UGG gene + 299719 299793 75 Locate
sdh3 gene + 299885 300097 213 Locate
nad2 gene + 300785 302538 1754 Locate
trnS-UGA gene + 316881 316967 87 Locate
nad1 gene − 329682 330066 385 Locate
trnI-CAU gene + 339168 339244 77 Locate
trnH-GUG gene − 364021 364094 74 Locate
trnI-CAA gene − 369961 370035 75 Locate
ccmC gene − 370084 370779 696 Locate
trnfM-CAU gene − 393779 393852 74 Locate
rrn26 gene − 394061 397472 3412 Locate
ccmFC gene + 404928 407185 2258 Locate
trnM-CAU gene + 413480 413552 73 Locate
trnG-GCC gene + 418706 418777 72 Locate
trnQ-UUG gene + 421894 421965 72 Locate
nad7 gene + 426030 430788 4759 Locate
rrn5 gene − 436028 436143 116 Locate
rrn18 gene − 436316 438008 1693 Locate
nad9 gene + 450286 450858 573 Locate
trnW-CCA gene + 451500 451573 74 Locate
rps12 gene − 471247 471624 378 Locate
nad3 gene − 471673 472029 357 Locate
ccmFN gene + 478836 480569 1734 Locate
rpl2 gene − 497035 498015 981 Locate
rps4 gene + 499283 500299 1017 Locate
rps3 gene + 503012 504133 1122 Locate
rpl16 gene + 504060 504527 468 Locate
atp9 gene + 532246 532470 225 Locate
atp6 gene + 553875 554738 864 Locate
atp1 gene − 563924 565450 1527 Locate
Status Available
Accession PX091360.1
Length 572,614 bp
GC content 45.2%
Annotated genes 63
Gene sequence records 8
Other 8 Nad Dehydrogenase 14 Cytochrome 8 Atp Synthase 5 Translation Rna 20 Ribosomal Protein 10 Ribosomal Rna 3
SSR 0
Direct 0
Inverted 0
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources