Species pathway expression context

Salvia miltiorrhiza

Candidate-to-expression mappings are displayed independently from candidate functional evidence.

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Matrix file
Salvia_miltiorrhiza.gene_tpm_log1p.tsv
Samples
12
Matrix genes
18,549
Expressed genes
18,334
Mapped candidate rows
68
Measured / ND
38 / 30
Partial quantitative coverage

Measured and ND rows coexist. ND cells use a separate hatch pattern and remain outside the continuous legend.

Row z-score−2.50+2.5
ND · Not detected
Unmapped candidate ID
Candidateflower-1flower-2flower-3leaf-1leaf-2leaf-3root-1root-2root-3stem-1stem-2stem-3
Smil04G0019160.1.v1.484Alkaloid · SGD
Smil04G0030910.1.v1.484Alkaloid · SGD
Smil05G0006560.1.v1.484Alkaloid · SGD
Smil05G0007190.1.v1.484Alkaloid · SGD
Smil05G0007990.1.v1.484Alkaloid · SGD
Smil05G0010350.1.v1.484Alkaloid · SGD
Smil05G0011140.1.v1.484Alkaloid · SGD
Smil05G0015000.1.v1.484Alkaloid · SGD
Smil06G0004680.1.v1.484Alkaloid · SGD
Smil06G0007930.1.v1.484Alkaloid · SGD
Smil06G0008730.1.v1.484Alkaloid · SGD
Smil06G0011550.1.v1.484Alkaloid · SGD
Smil06G0017550.1.v1.484Alkaloid · SGD
Smil06G0018650.1.v1.484Alkaloid · SGD
Smil06G0022240.1.v1.484Alkaloid · SGD
Smil07G0002590.1.v1.484Alkaloid · SGD
Smil07G0010920.1.v1.484Alkaloid · SGD
Smil07G0015480.1.v1.484Alkaloid · SGD
SmilGWHAOSJ000008320012040.1.v1.484Alkaloid · SGD
SmilGWHAOSJ000009070013320.1.v1.484Alkaloid · SGD
Smil00G0040450.1.v1.484Alkaloid · SLS
Smil02G0010620.1.v1.484Alkaloid · SLS
Smil03G0025530.1.v1.484Alkaloid · SLS
Smil00G0004320.1.v1.484Alkaloid · STR
Smil00G0005470.1.v1.484Alkaloid · STR
Smil00G0005750.1.v1.484Alkaloid · STR
Smil00G0009880.1.v1.484Alkaloid · STR
Smil00G0010870.1.v1.484Alkaloid · STR
Smil00G0012010.1.v1.484Alkaloid · STR
Smil00G0013950.1.v1.484Alkaloid · STR
Smil00G0020100.1.v1.484Alkaloid · STR
Smil00G0033360.1.v1.484Alkaloid · STR
Smil00G0033380.1.v1.484Alkaloid · STR
Smil00G0045730.1.v1.484Alkaloid · STR
Smil00G0046750.1.v1.484Alkaloid · STR
Smil01G0003040.1.v1.484Alkaloid · STR
Smil01G0003200.1.v1.484Alkaloid · STR
Smil01G0003650.1.v1.484Alkaloid · STR
Smil01G0003660.1.v1.484Alkaloid · STR
Smil01G0005310.1.v1.484Alkaloid · STR
Smil01G0021810.1.v1.484Alkaloid · STR
Smil01G0023080.1.v1.484Alkaloid · STR
Smil02G0002030.1.v1.484Alkaloid · STR
Smil02G0015410.1.v1.484Alkaloid · STR
Smil02G0025470.1.v1.484Alkaloid · STR
Smil03G0008680.1.v1.484Alkaloid · STR
Smil03G0008700.1.v1.484Alkaloid · STR
Smil03G0011660.1.v1.484Alkaloid · STR
Smil03G0015200.1.v1.484Alkaloid · STR
Smil03G0018020.1.v1.484Alkaloid · STR

Quantitative legend: measured cells use a diverging row z-score scale with a meaningful centre at zero. Raw values remain available in cell inspectors.

Mapping boundary: Species-level transcriptome matrix summaries are shown independently. Candidate IDs are not joined to expression IDs because annotation versions do not map directly.