Species pathway expression context

Salvia miltiorrhiza

Candidate-to-expression mappings are displayed independently from candidate functional evidence.

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Matrix file
Salvia_miltiorrhiza.gene_tpm_log1p.tsv
Samples
12
Matrix genes
18,549
Expressed genes
18,334
Mapped candidate rows
68
Measured / ND
38 / 30
Partial quantitative coverage

Measured and ND rows coexist. ND cells use a separate hatch pattern and remain outside the continuous legend.

Row z-score−2.50+2.5
ND · Not detected
Unmapped candidate ID
Candidateflower-1flower-2flower-3leaf-1leaf-2leaf-3root-1root-2root-3stem-1stem-2stem-3
Smil04G0009380.1.v1.484Flavonoid · PAL
Smil04G0026770.1.v1.484Flavonoid · PAL
Smil04G0027550.1.v1.484Flavonoid · PAL
Smil05G0007250.1.v1.484Flavonoid · PAL
Smil05G0026740.1.v1.484Flavonoid · PAL
Smil05G0032140.1.v1.484Flavonoid · PAL
Smil06G0027120.1.v1.484Flavonoid · PAL
Smil07G0014340.1.v1.484Flavonoid · PAL
Smil07G0019220.1.v1.484Flavonoid · PAL
Smil00G0009870.1.v1.484Flavonoid · UFGT
Smil00G0025040.1.v1.484Flavonoid · UFGT
Smil00G0025060.1.v1.484Flavonoid · UFGT
Smil00G0032740.1.v1.484Flavonoid · UFGT
Smil01G0004680.1.v1.484Flavonoid · UFGT
Smil01G0012010.1.v1.484Flavonoid · UFGT
Smil02G0020090.1.v1.484Flavonoid · UFGT
Smil03G0014740.1.v1.484Flavonoid · UFGT
Smil04G0018870.1.v1.484Flavonoid · UFGT
Smil06G0022450.1.v1.484Flavonoid · UFGT
Smil07G0011080.1.v1.484Flavonoid · UFGT
Smil00G0026390.1.v1.484Phenylpropanoid · 4CL
Smil00G0035230.1.v1.484Phenylpropanoid · 4CL
Smil00G0040380.1.v1.484Phenylpropanoid · 4CL
Smil00G0042240.1.v1.484Phenylpropanoid · 4CL
Smil00G0047430.1.v1.484Phenylpropanoid · 4CL
Smil01G0006480.1.v1.484Phenylpropanoid · 4CL
Smil01G0007490.1.v1.484Phenylpropanoid · 4CL
Smil01G0008000.1.v1.484Phenylpropanoid · 4CL
Smil01G0008010.1.v1.484Phenylpropanoid · 4CL
Smil01G0009540.1.v1.484Phenylpropanoid · 4CL
Smil01G0016930.1.v1.484Phenylpropanoid · 4CL
Smil01G0017850.1.v1.484Phenylpropanoid · 4CL
Smil01G0023070.1.v1.484Phenylpropanoid · 4CL
Smil01G0025560.1.v1.484Phenylpropanoid · 4CL
Smil01G0026650.1.v1.484Phenylpropanoid · 4CL
Smil01G0026830.1.v1.484Phenylpropanoid · 4CL
Smil02G0006000.1.v1.484Phenylpropanoid · 4CL
Smil02G0007300.1.v1.484Phenylpropanoid · 4CL
Smil02G0023210.1.v1.484Phenylpropanoid · 4CL
Smil02G0032370.1.v1.484Phenylpropanoid · 4CL
Smil02G0037720.1.v1.484Phenylpropanoid · 4CL
Smil03G0000280.1.v1.484Phenylpropanoid · 4CL
Smil03G0016440.1.v1.484Phenylpropanoid · 4CL
Smil03G0016900.1.v1.484Phenylpropanoid · 4CL
Smil03G0020910.1.v1.484Phenylpropanoid · 4CL
Smil03G0026740.1.v1.484Phenylpropanoid · 4CL
Smil03G0027060.1.v1.484Phenylpropanoid · 4CL
Smil03G0030000.1.v1.484Phenylpropanoid · 4CL
Smil03G0031530.1.v1.484Phenylpropanoid · 4CL
Smil04G0006710.1.v1.484Phenylpropanoid · 4CL

Quantitative legend: measured cells use a diverging row z-score scale with a meaningful centre at zero. Raw values remain available in cell inspectors.

Mapping boundary: Species-level transcriptome matrix summaries are shown independently. Candidate IDs are not joined to expression IDs because annotation versions do not map directly.