Species pathway expression context

Salvia miltiorrhiza

Candidate-to-expression mappings are displayed independently from candidate functional evidence.

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Matrix file
Salvia_miltiorrhiza.gene_tpm_log1p.tsv
Samples
12
Matrix genes
18,549
Expressed genes
18,334
Mapped candidate rows
68
Measured / ND
38 / 30
Partial quantitative coverage

Measured and ND rows coexist. ND cells use a separate hatch pattern and remain outside the continuous legend.

Row z-score−2.50+2.5
ND · Not detected
Unmapped candidate ID
Candidateflower-1flower-2flower-3leaf-1leaf-2leaf-3root-1root-2root-3stem-1stem-2stem-3
Smil04G0015880.1.v1.484Phenylpropanoid · 4CL
Smil04G0017790.1.v1.484Phenylpropanoid · 4CL
Smil04G0023100.1.v1.484Phenylpropanoid · 4CL
Smil04G0023110.1.v1.484Phenylpropanoid · 4CL
Smil04G0028420.1.v1.484Phenylpropanoid · 4CL
Smil05G0017790.1.v1.484Phenylpropanoid · 4CL
Smil05G0019370.1.v1.484Phenylpropanoid · 4CL
Smil06G0020140.1.v1.484Phenylpropanoid · 4CL
Smil06G0020350.1.v1.484Phenylpropanoid · 4CL
Smil06G0020380.1.v1.484Phenylpropanoid · 4CL
Smil06G0020390.1.v1.484Phenylpropanoid · 4CL
Smil06G0020400.1.v1.484Phenylpropanoid · 4CL
Smil06G0022200.1.v1.484Phenylpropanoid · 4CL
Smil06G0024540.1.v1.484Phenylpropanoid · 4CL
Smil06G0031290.1.v1.484Phenylpropanoid · 4CL
Smil07G0002560.1.v1.484Phenylpropanoid · 4CL
Smil07G0004050.1.v1.484Phenylpropanoid · 4CL
Smil07G0006920.1.v1.484Phenylpropanoid · 4CL
Smil07G0009250.1.v1.484Phenylpropanoid · 4CL
Smil07G0012940.1.v1.484Phenylpropanoid · 4CL
Smil00G0005740.1.v1.484Phenylpropanoid · C3H_CYP98A
Smil00G0007880.1.v1.484Phenylpropanoid · C3H_CYP98A
Smil00G0011050.1.v1.484Phenylpropanoid · C3H_CYP98A
Smil00G0016350.1.v1.484Phenylpropanoid · C3H_CYP98A
Smil00G0020810.1.v1.484Phenylpropanoid · C3H_CYP98A
Smil00G0023960.1.v1.484Phenylpropanoid · C3H_CYP98A
Smil00G0033900.1.v1.484Phenylpropanoid · C3H_CYP98A
Smil00G0039690.1.v1.484Phenylpropanoid · C3H_CYP98A
Smil00G0042760.1.v1.484Phenylpropanoid · C3H_CYP98A
Smil01G0003990.1.v1.484Phenylpropanoid · C3H_CYP98A
Smil01G0005250.1.v1.484Phenylpropanoid · C3H_CYP98A
Smil01G0010580.1.v1.484Phenylpropanoid · C3H_CYP98A
Smil01G0018040.1.v1.484Phenylpropanoid · C3H_CYP98A
Smil01G0018060.1.v1.484Phenylpropanoid · C3H_CYP98A
Smil01G0031000.1.v1.484Phenylpropanoid · C3H_CYP98A
Smil02G0018060.1.v1.484Phenylpropanoid · C3H_CYP98A
Smil02G0028100.1.v1.484Phenylpropanoid · C3H_CYP98A
Smil03G0010340.1.v1.484Phenylpropanoid · C3H_CYP98A
Smil03G0010370.1.v1.484Phenylpropanoid · C3H_CYP98A
Smil03G0010840.1.v1.484Phenylpropanoid · C3H_CYP98A
Smil03G0017840.1.v1.484Phenylpropanoid · C3H_CYP98A
Smil03G0017890.1.v1.484Phenylpropanoid · C3H_CYP98A
Smil03G0017950.1.v1.484Phenylpropanoid · C3H_CYP98A
Smil03G0023430.1.v1.484Phenylpropanoid · C3H_CYP98A
Smil03G0033490.1.v1.484Phenylpropanoid · C3H_CYP98A
Smil03G0035530.1.v1.484Phenylpropanoid · C3H_CYP98A
Smil03G0035540.1.v1.484Phenylpropanoid · C3H_CYP98A
Smil03G0035610.1.v1.484Phenylpropanoid · C3H_CYP98A
Smil03G0035620.1.v1.484Phenylpropanoid · C3H_CYP98A
Smil03G0035640.1.v1.484Phenylpropanoid · C3H_CYP98A

Quantitative legend: measured cells use a diverging row z-score scale with a meaningful centre at zero. Raw values remain available in cell inspectors.

Mapping boundary: Species-level transcriptome matrix summaries are shown independently. Candidate IDs are not joined to expression IDs because annotation versions do not map directly.