LamiOmicsDB Lamiaceae Multi-Omics Database
v1 808 species · 3 phylogenies · 6,313 sequences

Pathway-family scientific record

CODM_T6ODM

CODM / T6ODM enzyme-family module

This module includes PlantSME enzyme-family assignments and traceable candidate protein identifiers from genome-derived or transcriptome-derived protein sets.

Browse candidatesCompare speciesCSV
Stable locus plantsmeAlkaloid-related biosynthesis
Public candidate IDs
3,377
Species with candidates
80
Species with assignments
80
Source assignments
4,136
Gene-tree candidates
0
Motif candidates
0

Evidence profile

Available evidence layers

◆Candidate identifiers3,377 public species-linked identifiers can be inspected.
GTGene-tree workflow0 comparable source candidates; 0 high-confidence source calls.
MMotif-screen proxy0 motif-screen candidates; 0 with all required motif proxies.
100 kbLocal clustering proxy0 clusters across 0 species; maximum cluster size 0.

Comparative signature

Lamiaceae comparison fields

Rate delta
Not calculated
Prevalence delta
Not calculated
Comparable source
PlantSME family assignments
Comparable source count
4,136
Public candidate count
3,377
Evidence mode
plantsme

Species coverage

Assignment and locus coverage by species

Source family counts and public candidate identifiers are shown in separate columns.

SpeciesEvidence stateSource countCandidate IDsExpression
Pogostemon cablinLamioideae · Pogostemon Stable locus 16850 Available
Teucrium chamaedrysAjugoideae · Teucrium Stable locus 15650 No matrix
Ocimum basilicumNepetoideae · Ocimum Stable locus 12950 Available
Salvia splendensNepetoideae · Salvia Stable locus 11150 No matrix
Elsholtzia splendensNepetoideae · Elsholtzia Stable locus 10250 No matrix
Stenogyne calaminthoidesLamioideae · Stenogyne Stable locus 9850 No matrix
Nepeta catariaNepetoideae · Nepeta Stable locus 9350 Available
Callicarpa americanaCallicarpoideae · Callicarpa Stable locus 9050 No matrix
Teucrium marumAjugoideae · Teucrium Stable locus 9050 No matrix
Tectona grandisTectonoideae · Tectona Stable locus 7850 Available
Salvia rosmarinusNepetoideae · Salvia Stable locus 6950 Available
Clinopodium barosmumNepetoideae · Clinopodium Stable locus 6550 No matrix
Hyssopus officinalisNepetoideae · Hyssopus Stable locus 6550 No matrix
Nepeta mussiniiNepetoideae · Nepeta Stable locus 6450 Available
Glechoma longitubaNepetoideae · Glechoma Stable locus 6250 No matrix
Cornutia pyramidataPremnoideae · Cornutia Stable locus 6150 No matrix
Perilla frutescensNepetoideae · Perilla Stable locus 6150 No matrix
Clinopodium gracileNepetoideae · Clinopodium Stable locus 5950 No matrix
Phlomoides rotataLamioideae · Phlomoides Stable locus 5950 No matrix
Origanum vulgareNepetoideae · Origanum Stable locus 5850 No matrix
Mosla soochowensisNepetoideae · Mosla Stable locus 5550 No matrix
Salvia bowleyanaNepetoideae · Salvia Stable locus 5550 No matrix
Rotheca myricoidesAjugoideae · Rotheca Stable locus 5450 No matrix
Prostanthera lasianthosProstantheroideae · Prostanthera Stable locus 5250 No matrix
Ajuga decumbensAjugoideae · Ajuga Stable locus 5150 No matrix
Phlomis fruticosaLamioideae · Phlomis Stable locus 5150 No matrix
Prunella vulgarisNepetoideae · Prunella Stable locus 5150 No matrix
Salvia miltiorrhizaNepetoideae · Salvia Stable locus 5150 Available
Vitex agnus-castusViticoideae · Vitex Stable locus 5150 No matrix
Mosla chinensisNepetoideae · Mosla Stable locus 5050 No matrix
Plectranthus barbatusNepetoideae · Plectranthus Stable locus 5050 No matrix
Premna microphyllaPremnoideae · Premna Stable locus 4949 No matrix
Thymus quinquecostatusNepetoideae · Thymus Stable locus 4949 No matrix
Callicarpa nudifloraCallicarpoideae · Callicarpa Stable locus 4747 No matrix
Isodon lophanthoidesNepetoideae · Isodon Stable locus 4747 No matrix
Collinsonia canadensisNepetoideae · Collinsonia Stable locus 4646 No matrix
Salvia divinorumNepetoideae · Salvia Stable locus 4646 No matrix
Westringia fruticosaProstantheroideae · Westringia Stable locus 4646 No matrix
Isodon serraNepetoideae · Isodon Stable locus 4545 No matrix
Salvia hispanicaNepetoideae · Salvia Stable locus 4545 No matrix
Scutellaria baicalensisScutellarioideae · Scutellaria Stable locus 4545 No matrix
Hyptis suaveolensNepetoideae · Hyptis Stable locus 4444 No matrix
Schizonepeta tenuifoliaNepetoideae · Schizonepeta Stable locus 4242 No matrix
Holmskioldia sanguineaScutellarioideae · Holmskioldia Stable locus 4040 No matrix
Mentha spicataNepetoideae · Mentha Stable locus 4040 No matrix
Agastache foeniculumNepetoideae · Agastache Stable locus 3939 No matrix
Drepanocaryum sewerzowiiNepetoideae · Drepanocaryum Stable locus 3939 No matrix
Marmoritis complanataNepetoideae · Marmoritis Stable locus 3939 No matrix
Perovskia atriplicifoliaNepetoideae · Perovskia Stable locus 3939 No matrix
Glechoma hederaceaNepetoideae · Glechoma Stable locus 3838 No matrix
Leonurus japonicusLamioideae · Leonurus Stable locus 3838 No matrix
Mentha x piperitaNepetoideae · Mentha Stable locus 3838 No matrix
Petraeovitex bambusetoriumPeronematoideae · Petraeovitex Stable locus 3838 No matrix
Dracocephalum rupestreNepetoideae · Dracocephalum Stable locus 3737 No matrix
Lavandula angustifoliaNepetoideae · Lavandula Stable locus 3737 No matrix
Leonurus sibiricusLamioideae · Leonurus Stable locus 3737 No matrix
Ajuga reptansAjugoideae · Ajuga Stable locus 3636 No matrix
Ballota pseudodictamnusLamioideae · Ballota Stable locus 3636 No matrix
Clerodendrum bungeiAjugoideae · Clerodendrum Stable locus 3636 No matrix
Congea tomentosaSymphorematoideae · Congea Stable locus 3636 No matrix
Gmelina philippensisPremnoideae · Gmelina Stable locus 3636 No matrix
Monarda didymaNepetoideae · Monarda Stable locus 3636 No matrix
Ocimum tenuiflorumNepetoideae · Ocimum Stable locus 3636 No matrix
Origanum majoranaNepetoideae · Origanum Stable locus 3636 No matrix
Thymus vulgarisNepetoideae · Thymus Stable locus 3636 No matrix
Perilla citriodoraNepetoideae · Perilla Stable locus 3434 No matrix
Perilla frutescens var. hirtellaNepetoideae · Perilla Stable locus 3434 No matrix
Salvia officinalisNepetoideae · Salvia Stable locus 3434 No matrix
Lycopus americanusNepetoideae · Lycopus Stable locus 3333 No matrix
Teucrium canadenseAjugoideae · Teucrium Stable locus 3333 No matrix
Lamium albumLamioideae · Lamium Stable locus 3232 No matrix
Leonurus cardiacaLamioideae · Leonurus Stable locus 3232 No matrix
Leonotis leonurusLamioideae · Leonotis Stable locus 3030 No matrix
Marrubium vulgareLamioideae · Marrubium Stable locus 3030 No matrix
Scutellaria barbataScutellarioideae · Scutellaria Stable locus 3030 No matrix
Melissa officinalisNepetoideae · Melissa Stable locus 2929 No matrix
Salvia sclareaNepetoideae · Salvia Stable locus 2727 No matrix
Agastache rugosaNepetoideae · Agastache Stable locus 2626 No matrix
Mentha longifoliaNepetoideae · Mentha Stable locus 2626 Available
Stachys officinalisLamioideae · Stachys Stable locus 2323 No matrix

Candidate records

Traceable candidate identifiers

Filter and inspect candidate identifiers for this family.

Clear
Candidate IDSpeciesPathway / familyEvidenceConfidenceIdentityHMM score
STOF_c58214_g1_i2_len_1308
Stachys officinalisAlkaloid · CODM_T6ODMblast+hmm High 30.4%189.8
Ms_c004g01371.1
Mosla soochowensisAlkaloid · CODM_T6ODMblast+hmm High 52.6%189.6
XP_047982762.1
Salvia hispanicaAlkaloid · CODM_T6ODMblast+hmm High 51.7%189.6
evm.model.Chr16.1083
Callicarpa nudifloraAlkaloid · CODM_T6ODMblast+hmm High 34.0%189.6
Ms_c001g00329.1
Mosla soochowensisAlkaloid · CODM_T6ODMblast+hmm High 52.6%189.5
MODI_c26224_g1_i3_len_1158
Monarda didymaAlkaloid · CODM_T6ODMblast+hmm High 31.1%189.3
MACO_g10688.t1
Marmoritis complanataAlkaloid · CODM_T6ODMblast+hmm High 32.1%189.2
MESP_c18338_g1_i1_len_927
Mentha spicataAlkaloid · CODM_T6ODMblast+hmm High 32.3%189.0
KAL8473048.1
Phlomoides rotataAlkaloid · CODM_T6ODMblast+hmm High 51.5%188.9
g23040.t1
Nepeta mussiniiAlkaloid · CODM_T6ODMblast+hmm High 30.3%188.9
MEOF_c15165_g1_i1_len_1392
Melissa officinalisAlkaloid · CODM_T6ODMblast+hmm High 41.9%188.8
KAL8473049.1
Phlomoides rotataAlkaloid · CODM_T6ODMblast+hmm High 51.5%188.7
385855.g27.t1
Ocimum basilicumAlkaloid · CODM_T6ODMblast+hmm High 34.3%188.5
Ls5g09900.1
Leonurus sibiricusAlkaloid · CODM_T6ODMblast+hmm High 52.6%188.5
Mc2g29110.1
Mosla chinensisAlkaloid · CODM_T6ODMblast+hmm High 32.8%188.4
evm.model.LG06.1154
Clinopodium barosmumAlkaloid · CODM_T6ODMblast+hmm High 32.2%188.4
Dru_2G0031290.1
Dracocephalum rupestreAlkaloid · CODM_T6ODMblast+hmm High 32.2%188.2
CAame13G0012190.v1.94
Callicarpa americanaAlkaloid · CODM_T6ODMblast+hmm High 34.0%187.9
rna-gnl|WGS:QFCC|chr08_11972841_11975946.mrna1
Perilla frutescensAlkaloid · CODM_T6ODMblast+hmm High 53.2%187.9
AJRE_c26775_g1_i3_len_1351
Ajuga reptansAlkaloid · CODM_T6ODMblast+hmm High 54.4%187.7
CAame13G0012160.v1.94
Callicarpa americanaAlkaloid · CODM_T6ODMblast+hmm High 32.9%187.7
tectona_grandis_Tg17g10950.t1
Tectona grandisAlkaloid · CODM_T6ODMblast+hmm High 32.5%187.7
LAAN_c42601_g2_i1_len_1387
Lavandula angustifoliaAlkaloid · CODM_T6ODMblast+hmm High 30.9%187.6
PRMI_c42500_g1_i1_len_1225
Premna microphyllaAlkaloid · CODM_T6ODMblast+hmm High 31.4%187.6
g24970.t1
Ajuga decumbensAlkaloid · CODM_T6ODMblast+hmm High 55.0%187.6
Dru_5G0002630.1
Dracocephalum rupestreAlkaloid · CODM_T6ODMblast+hmm High 33.1%187.5
PRMI_c25904_g1_i1_len_1253
Premna microphyllaAlkaloid · CODM_T6ODMblast+hmm High 32.4%187.5
g24976.t1
Ajuga decumbensAlkaloid · CODM_T6ODMblast+hmm High 51.8%187.4
MACO_g3453.t1
Marmoritis complanataAlkaloid · CODM_T6ODMblast+hmm High 33.2%187.2
Pat_B21G092300.m1
Pogostemon cablinAlkaloid · CODM_T6ODMblast+hmm High 52.4%187.2
KAL1555853.1
Salvia divinorumAlkaloid · CODM_T6ODMblast+hmm High 32.6%187.1
Mlonscaffold_1_length_466995370052950.1.v1.326
Mentha longifoliaAlkaloid · CODM_T6ODMblast+hmm High 31.8%187.0
PHFR_c48640_g1_i2_len_1240
Phlomis fruticosaAlkaloid · CODM_T6ODMblast+hmm High 50.3%187.0
Teucrium_chamaedrys__Tcha42086
Teucrium chamaedrysAlkaloid · CODM_T6ODMblast+hmm High 53.8%187.0
Es2B.G052100.t1
Elsholtzia splendensAlkaloid · CODM_T6ODMblast+hmm High 30.2%186.8
evm.model.ptg000017l.611
Isodon serraAlkaloid · CODM_T6ODMblast+hmm High 52.9%186.8
Pat_A21G100400.m1
Pogostemon cablinAlkaloid · CODM_T6ODMblast+hmm High 52.4%186.7
evm.model.Chr16.1080
Callicarpa nudifloraAlkaloid · CODM_T6ODMblast+hmm High 32.5%186.7
GWHPBJVA027478
Thymus quinquecostatusAlkaloid · CODM_T6ODMblast+hmm High 30.8%186.6
MESP_c39968_g1_i1_len_1258
Mentha spicataAlkaloid · CODM_T6ODMblast+hmm High 31.0%186.6
g14435.t1
Nepeta catariaAlkaloid · CODM_T6ODMblast+hmm High 33.9%186.6
Dru_5G0002620.1
Dracocephalum rupestreAlkaloid · CODM_T6ODMblast+hmm High 32.8%186.5
rna-gnl|WGS:QFCC|chr17_46540269_46542463.mrna1
Perilla frutescensAlkaloid · CODM_T6ODMblast+hmm High 32.1%186.5
LYAM_c38366_g2_i1_len_1310
Lycopus americanusAlkaloid · CODM_T6ODMblast+hmm High 31.3%186.4
MEPI_c53673_g1_i1_len_1307
Mentha x piperitaAlkaloid · CODM_T6ODMblast+hmm High 30.7%186.4
HOSA_c46789_g1_i1_len_1141
Holmskioldia sanguineaAlkaloid · CODM_T6ODMblast+hmm High 32.3%186.3
Mc1g50650.1
Mosla chinensisAlkaloid · CODM_T6ODMblast+hmm High 30.0%186.3
PRLA_c50236_g1_i2_len_1324
Prostanthera lasianthosAlkaloid · CODM_T6ODMblast+hmm High 53.8%186.3
Mc6g05190.1
Mosla chinensisAlkaloid · CODM_T6ODMblast+hmm High 32.6%186.2
AJRE_c25287_g1_i1_len_1102
Ajuga reptansAlkaloid · CODM_T6ODMblast+hmm High 30.0%186.1