LamiOmicsDB Lamiaceae Multi-Omics Database
v1 808 species · 3 phylogenies · 6,313 sequences

Pathway-family scientific record

CODM_T6ODM

CODM / T6ODM enzyme-family module

This module includes PlantSME enzyme-family assignments and traceable candidate protein identifiers from genome-derived or transcriptome-derived protein sets.

Browse candidatesCompare speciesCSV
Stable locus plantsmeAlkaloid-related biosynthesis
Public candidate IDs
3,377
Species with candidates
80
Species with assignments
80
Source assignments
4,136
Gene-tree candidates
0
Motif candidates
0

Evidence profile

Available evidence layers

◆Candidate identifiers3,377 public species-linked identifiers can be inspected.
GTGene-tree workflow0 comparable source candidates; 0 high-confidence source calls.
MMotif-screen proxy0 motif-screen candidates; 0 with all required motif proxies.
100 kbLocal clustering proxy0 clusters across 0 species; maximum cluster size 0.

Comparative signature

Lamiaceae comparison fields

Rate delta
Not calculated
Prevalence delta
Not calculated
Comparable source
PlantSME family assignments
Comparable source count
4,136
Public candidate count
3,377
Evidence mode
plantsme

Species coverage

Assignment and locus coverage by species

Source family counts and public candidate identifiers are shown in separate columns.

SpeciesEvidence stateSource countCandidate IDsExpression
Pogostemon cablinLamioideae · Pogostemon Stable locus 16850 Available
Teucrium chamaedrysAjugoideae · Teucrium Stable locus 15650 No matrix
Ocimum basilicumNepetoideae · Ocimum Stable locus 12950 Available
Salvia splendensNepetoideae · Salvia Stable locus 11150 No matrix
Elsholtzia splendensNepetoideae · Elsholtzia Stable locus 10250 No matrix
Stenogyne calaminthoidesLamioideae · Stenogyne Stable locus 9850 No matrix
Nepeta catariaNepetoideae · Nepeta Stable locus 9350 Available
Callicarpa americanaCallicarpoideae · Callicarpa Stable locus 9050 No matrix
Teucrium marumAjugoideae · Teucrium Stable locus 9050 No matrix
Tectona grandisTectonoideae · Tectona Stable locus 7850 Available
Salvia rosmarinusNepetoideae · Salvia Stable locus 6950 Available
Clinopodium barosmumNepetoideae · Clinopodium Stable locus 6550 No matrix
Hyssopus officinalisNepetoideae · Hyssopus Stable locus 6550 No matrix
Nepeta mussiniiNepetoideae · Nepeta Stable locus 6450 Available
Glechoma longitubaNepetoideae · Glechoma Stable locus 6250 No matrix
Cornutia pyramidataPremnoideae · Cornutia Stable locus 6150 No matrix
Perilla frutescensNepetoideae · Perilla Stable locus 6150 No matrix
Clinopodium gracileNepetoideae · Clinopodium Stable locus 5950 No matrix
Phlomoides rotataLamioideae · Phlomoides Stable locus 5950 No matrix
Origanum vulgareNepetoideae · Origanum Stable locus 5850 No matrix
Mosla soochowensisNepetoideae · Mosla Stable locus 5550 No matrix
Salvia bowleyanaNepetoideae · Salvia Stable locus 5550 No matrix
Rotheca myricoidesAjugoideae · Rotheca Stable locus 5450 No matrix
Prostanthera lasianthosProstantheroideae · Prostanthera Stable locus 5250 No matrix
Ajuga decumbensAjugoideae · Ajuga Stable locus 5150 No matrix
Phlomis fruticosaLamioideae · Phlomis Stable locus 5150 No matrix
Prunella vulgarisNepetoideae · Prunella Stable locus 5150 No matrix
Salvia miltiorrhizaNepetoideae · Salvia Stable locus 5150 Available
Vitex agnus-castusViticoideae · Vitex Stable locus 5150 No matrix
Mosla chinensisNepetoideae · Mosla Stable locus 5050 No matrix
Plectranthus barbatusNepetoideae · Plectranthus Stable locus 5050 No matrix
Premna microphyllaPremnoideae · Premna Stable locus 4949 No matrix
Thymus quinquecostatusNepetoideae · Thymus Stable locus 4949 No matrix
Callicarpa nudifloraCallicarpoideae · Callicarpa Stable locus 4747 No matrix
Isodon lophanthoidesNepetoideae · Isodon Stable locus 4747 No matrix
Collinsonia canadensisNepetoideae · Collinsonia Stable locus 4646 No matrix
Salvia divinorumNepetoideae · Salvia Stable locus 4646 No matrix
Westringia fruticosaProstantheroideae · Westringia Stable locus 4646 No matrix
Isodon serraNepetoideae · Isodon Stable locus 4545 No matrix
Salvia hispanicaNepetoideae · Salvia Stable locus 4545 No matrix
Scutellaria baicalensisScutellarioideae · Scutellaria Stable locus 4545 No matrix
Hyptis suaveolensNepetoideae · Hyptis Stable locus 4444 No matrix
Schizonepeta tenuifoliaNepetoideae · Schizonepeta Stable locus 4242 No matrix
Holmskioldia sanguineaScutellarioideae · Holmskioldia Stable locus 4040 No matrix
Mentha spicataNepetoideae · Mentha Stable locus 4040 No matrix
Agastache foeniculumNepetoideae · Agastache Stable locus 3939 No matrix
Drepanocaryum sewerzowiiNepetoideae · Drepanocaryum Stable locus 3939 No matrix
Marmoritis complanataNepetoideae · Marmoritis Stable locus 3939 No matrix
Perovskia atriplicifoliaNepetoideae · Perovskia Stable locus 3939 No matrix
Glechoma hederaceaNepetoideae · Glechoma Stable locus 3838 No matrix
Leonurus japonicusLamioideae · Leonurus Stable locus 3838 No matrix
Mentha x piperitaNepetoideae · Mentha Stable locus 3838 No matrix
Petraeovitex bambusetoriumPeronematoideae · Petraeovitex Stable locus 3838 No matrix
Dracocephalum rupestreNepetoideae · Dracocephalum Stable locus 3737 No matrix
Lavandula angustifoliaNepetoideae · Lavandula Stable locus 3737 No matrix
Leonurus sibiricusLamioideae · Leonurus Stable locus 3737 No matrix
Ajuga reptansAjugoideae · Ajuga Stable locus 3636 No matrix
Ballota pseudodictamnusLamioideae · Ballota Stable locus 3636 No matrix
Clerodendrum bungeiAjugoideae · Clerodendrum Stable locus 3636 No matrix
Congea tomentosaSymphorematoideae · Congea Stable locus 3636 No matrix
Gmelina philippensisPremnoideae · Gmelina Stable locus 3636 No matrix
Monarda didymaNepetoideae · Monarda Stable locus 3636 No matrix
Ocimum tenuiflorumNepetoideae · Ocimum Stable locus 3636 No matrix
Origanum majoranaNepetoideae · Origanum Stable locus 3636 No matrix
Thymus vulgarisNepetoideae · Thymus Stable locus 3636 No matrix
Perilla citriodoraNepetoideae · Perilla Stable locus 3434 No matrix
Perilla frutescens var. hirtellaNepetoideae · Perilla Stable locus 3434 No matrix
Salvia officinalisNepetoideae · Salvia Stable locus 3434 No matrix
Lycopus americanusNepetoideae · Lycopus Stable locus 3333 No matrix
Teucrium canadenseAjugoideae · Teucrium Stable locus 3333 No matrix
Lamium albumLamioideae · Lamium Stable locus 3232 No matrix
Leonurus cardiacaLamioideae · Leonurus Stable locus 3232 No matrix
Leonotis leonurusLamioideae · Leonotis Stable locus 3030 No matrix
Marrubium vulgareLamioideae · Marrubium Stable locus 3030 No matrix
Scutellaria barbataScutellarioideae · Scutellaria Stable locus 3030 No matrix
Melissa officinalisNepetoideae · Melissa Stable locus 2929 No matrix
Salvia sclareaNepetoideae · Salvia Stable locus 2727 No matrix
Agastache rugosaNepetoideae · Agastache Stable locus 2626 No matrix
Mentha longifoliaNepetoideae · Mentha Stable locus 2626 Available
Stachys officinalisLamioideae · Stachys Stable locus 2323 No matrix

Candidate records

Traceable candidate identifiers

Filter and inspect candidate identifiers for this family.

Clear
Candidate IDSpeciesPathway / familyEvidenceConfidenceIdentityHMM score
g24870.t1
Nepeta catariaAlkaloid · CODM_T6ODMblast+hmm High 30.0%186.1
Mc5g15380.1
Mosla chinensisAlkaloid · CODM_T6ODMblast+hmm High 30.4%186.0
rna-gnl|WGS:QIYW|chr04_56126556_56129682.mrna1
Perilla citriodoraAlkaloid · CODM_T6ODMblast+hmm High 52.6%186.0
rna-gnl|WGS:QIYW|chr04_56126556_56129682.mrna1
Perilla frutescens var. hirtellaAlkaloid · CODM_T6ODMblast+hmm High 52.6%186.0
Smil02G0033990.1.v1.484
Salvia miltiorrhizaAlkaloid · CODM_T6ODMblast+hmm High 30.9%185.9
SmilGWHAOSJ000005460007130.1.v1.484
Salvia miltiorrhizaAlkaloid · CODM_T6ODMblast+hmm High 30.9%185.9
CAame08G0013970.v1.94
Callicarpa americanaAlkaloid · CODM_T6ODMblast+hmm High 53.2%185.8
CAame13G0032140.v1.94
Callicarpa americanaAlkaloid · CODM_T6ODMblast+hmm High 34.0%185.8
AGFO_c18113_g1_i1_len_1224
Agastache foeniculumAlkaloid · CODM_T6ODMblast+hmm High 30.1%185.7
DRSE_g16001.t1
Drepanocaryum sewerzowiiAlkaloid · CODM_T6ODMblast+hmm High 31.2%185.7
HYSU_c32688_g1_i2_len_1268
Hyptis suaveolensAlkaloid · CODM_T6ODMblast+hmm High 51.5%185.6
HOSA_c46992_g1_i4_len_1382
Holmskioldia sanguineaAlkaloid · CODM_T6ODMblast+hmm High 52.6%185.5
scutellaria_barbata_GWHPAOTP026045
Scutellaria barbataAlkaloid · CODM_T6ODMblast+hmm High 52.6%185.5
CAame13G0012170.v1.94
Callicarpa americanaAlkaloid · CODM_T6ODMblast+hmm High 32.4%185.3
CAame13G0032130.v1.94
Callicarpa americanaAlkaloid · CODM_T6ODMblast+hmm High 32.4%185.3
GlLon_031675-T1
Glechoma longitubaAlkaloid · CODM_T6ODMblast+hmm High 33.6%185.1
Teucrium_chamaedrys__Tcha16753
Teucrium chamaedrysAlkaloid · CODM_T6ODMblast+hmm High 53.2%185.1
385855.g33.t1
Ocimum basilicumAlkaloid · CODM_T6ODMblast+hmm High 31.7%185.0
rna-gnl|WGS:QFCC|chr02_23666709_23668992.mrna1
Perilla frutescensAlkaloid · CODM_T6ODMblast+hmm High 31.8%185.0
COPY_c73898_g1_i2_len_1184
Cornutia pyramidataAlkaloid · CODM_T6ODMblast+hmm High 32.7%184.9
XP_042005401.1
Salvia splendensAlkaloid · CODM_T6ODMblast+hmm High 30.7%184.9
AG34_scaffold2_38400T
Agastache rugosaAlkaloid · CODM_T6ODMblast+hmm High 30.1%184.7
Ms_c002g02437.1
Mosla soochowensisAlkaloid · CODM_T6ODMblast+hmm High 32.3%184.7
tectona_grandis_Tg07g06670.t1
Tectona grandisAlkaloid · CODM_T6ODMblast+hmm High 30.9%184.7
Teucrium_chamaedrys__Tcha16747
Teucrium chamaedrysAlkaloid · CODM_T6ODMblast+hmm High 50.5%184.6
g4501.t1
Hyssopus officinalisAlkaloid · CODM_T6ODMblast+hmm High 32.2%184.6
Mc1g50670.1
Mosla chinensisAlkaloid · CODM_T6ODMblast+hmm High 32.3%184.3
MACO_g8594.t1
Marmoritis complanataAlkaloid · CODM_T6ODMblast+hmm High 30.5%184.2
CAame08G0013960.v1.94
Callicarpa americanaAlkaloid · CODM_T6ODMblast+hmm High 53.2%184.1
GlLon_016209-T1
Glechoma longitubaAlkaloid · CODM_T6ODMblast+hmm High 30.5%184.1
MODI_c31455_g3_i1_len_1186
Monarda didymaAlkaloid · CODM_T6ODMblast+hmm High 31.0%184.1
Teucrium_chamaedrys__Tcha42082
Teucrium chamaedrysAlkaloid · CODM_T6ODMblast+hmm High 50.0%184.1
Teucrium_chamaedrys__Tcha112554
Teucrium chamaedrysAlkaloid · CODM_T6ODMblast+hmm High 31.1%184.0
KAL8510652.1
Phlomoides rotataAlkaloid · CODM_T6ODMblast+hmm High 32.9%183.9
ORMA_c52347_g1_i2_len_1256
Origanum majoranaAlkaloid · CODM_T6ODMblast+hmm High 31.1%183.9
9:ILLG8G56.24m1
Isodon lophanthoidesAlkaloid · CODM_T6ODMblast+hmm High 30.3%183.8
COPY_c65804_g1_i1_len_1377
Cornutia pyramidataAlkaloid · CODM_T6ODMblast+hmm High 53.2%183.8
Clgra_027726-T1
Clinopodium gracileAlkaloid · CODM_T6ODMblast+hmm High 35.7%183.8
THVU_c75070_g1_i1_len_1537
Thymus vulgarisAlkaloid · CODM_T6ODMblast+hmm High 30.6%183.8
g4395.t1
Salvia sclareaAlkaloid · CODM_T6ODMblast+hmm High 33.1%183.7
rna-gnl|WGS:QFCC|chr15_48164783_48166955.mrna1
Perilla frutescensAlkaloid · CODM_T6ODMblast+hmm High 32.1%183.7
rna-gnl|WGS:QIYW|chr09_05973041_05975224.mrna1
Perilla citriodoraAlkaloid · CODM_T6ODMblast+hmm High 32.1%183.7
rna-gnl|WGS:QIYW|chr09_05973041_05975224.mrna1
Perilla frutescens var. hirtellaAlkaloid · CODM_T6ODMblast+hmm High 32.1%183.7
Teucrium_chamaedrys__Tcha192541
Teucrium chamaedrysAlkaloid · CODM_T6ODMblast+hmm High 53.2%183.6
g18768.t1
Ajuga decumbensAlkaloid · CODM_T6ODMblast+hmm High 30.8%183.6
Smil07G0008750.1.v1.484
Salvia miltiorrhizaAlkaloid · CODM_T6ODMblast+hmm High 30.3%183.4
Sch000013754
Schizonepeta tenuifoliaAlkaloid · CODM_T6ODMblast+hmm High 30.3%183.3
Teucrium_chamaedrys__Tcha184305
Teucrium chamaedrysAlkaloid · CODM_T6ODMblast+hmm High 33.3%183.3
origanum_vulgare_265.g95.t1
Origanum vulgareAlkaloid · CODM_T6ODMblast+hmm High 30.7%183.3
VIAG_c48434_g1_i1_len_1228
Vitex agnus-castusAlkaloid · CODM_T6ODMblast+hmm High 31.6%183.2