LamiOmicsDB Lamiaceae Multi-Omics Database
v1 808 species · 3 phylogenies · 6,313 sequences

Pathway-family scientific record

ISY

ISY enzyme-family module

This module includes PlantSME enzyme-family assignments and traceable candidate protein identifiers from genome-derived or transcriptome-derived protein sets.

Browse candidatesCompare speciesCSV
Stable locus plantsmeAlkaloid-related biosynthesis
Public candidate IDs
349
Species with candidates
80
Species with assignments
80
Source assignments
349
Gene-tree candidates
0
Motif candidates
0

Evidence profile

Available evidence layers

◆Candidate identifiers349 public species-linked identifiers can be inspected.
GTGene-tree workflow0 comparable source candidates; 0 high-confidence source calls.
MMotif-screen proxy0 motif-screen candidates; 0 with all required motif proxies.
100 kbLocal clustering proxy0 clusters across 0 species; maximum cluster size 0.

Comparative signature

Lamiaceae comparison fields

Rate delta
Not calculated
Prevalence delta
Not calculated
Comparable source
PlantSME family assignments
Comparable source count
349
Public candidate count
349
Evidence mode
plantsme

Species coverage

Assignment and locus coverage by species

Source family counts and public candidate identifiers are shown in separate columns.

SpeciesEvidence stateSource countCandidate IDsExpression
Teucrium chamaedrysAjugoideae · Teucrium Stable locus 2626 No matrix
Pogostemon cablinLamioideae · Pogostemon Stable locus 2424 Available
Stenogyne calaminthoidesLamioideae · Stenogyne Stable locus 1313 No matrix
Callicarpa americanaCallicarpoideae · Callicarpa Stable locus 99 No matrix
Tectona grandisTectonoideae · Tectona Stable locus 99 Available
Callicarpa nudifloraCallicarpoideae · Callicarpa Stable locus 88 No matrix
Nepeta catariaNepetoideae · Nepeta Stable locus 88 Available
Ocimum basilicumNepetoideae · Ocimum Stable locus 88 Available
Phlomis fruticosaLamioideae · Phlomis Stable locus 88 No matrix
Phlomoides rotataLamioideae · Phlomoides Stable locus 88 No matrix
Salvia splendensNepetoideae · Salvia Stable locus 88 No matrix
Cornutia pyramidataPremnoideae · Cornutia Stable locus 66 No matrix
Ocimum tenuiflorumNepetoideae · Ocimum Stable locus 66 No matrix
Vitex agnus-castusViticoideae · Vitex Stable locus 66 No matrix
Ajuga decumbensAjugoideae · Ajuga Stable locus 55 No matrix
Ballota pseudodictamnusLamioideae · Ballota Stable locus 55 No matrix
Glechoma longitubaNepetoideae · Glechoma Stable locus 55 No matrix
Isodon serraNepetoideae · Isodon Stable locus 55 No matrix
Lamium albumLamioideae · Lamium Stable locus 55 No matrix
Nepeta mussiniiNepetoideae · Nepeta Stable locus 55 Available
Perovskia atriplicifoliaNepetoideae · Perovskia Stable locus 55 No matrix
Petraeovitex bambusetoriumPeronematoideae · Petraeovitex Stable locus 55 No matrix
Salvia rosmarinusNepetoideae · Salvia Stable locus 55 Available
Teucrium canadenseAjugoideae · Teucrium Stable locus 55 No matrix
Teucrium marumAjugoideae · Teucrium Stable locus 55 No matrix
Thymus vulgarisNepetoideae · Thymus Stable locus 55 No matrix
Clinopodium barosmumNepetoideae · Clinopodium Stable locus 44 No matrix
Elsholtzia splendensNepetoideae · Elsholtzia Stable locus 44 No matrix
Gmelina philippensisPremnoideae · Gmelina Stable locus 44 No matrix
Hyssopus officinalisNepetoideae · Hyssopus Stable locus 44 No matrix
Isodon lophanthoidesNepetoideae · Isodon Stable locus 44 No matrix
Lavandula angustifoliaNepetoideae · Lavandula Stable locus 44 No matrix
Leonurus japonicusLamioideae · Leonurus Stable locus 44 No matrix
Leonurus sibiricusLamioideae · Leonurus Stable locus 44 No matrix
Marmoritis complanataNepetoideae · Marmoritis Stable locus 44 No matrix
Perilla frutescensNepetoideae · Perilla Stable locus 44 No matrix
Plectranthus barbatusNepetoideae · Plectranthus Stable locus 44 No matrix
Prostanthera lasianthosProstantheroideae · Prostanthera Stable locus 44 No matrix
Prunella vulgarisNepetoideae · Prunella Stable locus 44 No matrix
Rotheca myricoidesAjugoideae · Rotheca Stable locus 44 No matrix
Westringia fruticosaProstantheroideae · Westringia Stable locus 44 No matrix
Agastache rugosaNepetoideae · Agastache Stable locus 33 No matrix
Ajuga reptansAjugoideae · Ajuga Stable locus 33 No matrix
Drepanocaryum sewerzowiiNepetoideae · Drepanocaryum Stable locus 33 No matrix
Glechoma hederaceaNepetoideae · Glechoma Stable locus 33 No matrix
Holmskioldia sanguineaScutellarioideae · Holmskioldia Stable locus 33 No matrix
Hyptis suaveolensNepetoideae · Hyptis Stable locus 33 No matrix
Leonotis leonurusLamioideae · Leonotis Stable locus 33 No matrix
Leonurus cardiacaLamioideae · Leonurus Stable locus 33 No matrix
Melissa officinalisNepetoideae · Melissa Stable locus 33 No matrix
Premna microphyllaPremnoideae · Premna Stable locus 33 No matrix
Salvia divinorumNepetoideae · Salvia Stable locus 33 No matrix
Salvia hispanicaNepetoideae · Salvia Stable locus 33 No matrix
Scutellaria baicalensisScutellarioideae · Scutellaria Stable locus 33 No matrix
Scutellaria barbataScutellarioideae · Scutellaria Stable locus 33 No matrix
Stachys officinalisLamioideae · Stachys Stable locus 33 No matrix
Clerodendrum bungeiAjugoideae · Clerodendrum Stable locus 22 No matrix
Clinopodium gracileNepetoideae · Clinopodium Stable locus 22 No matrix
Congea tomentosaSymphorematoideae · Congea Stable locus 22 No matrix
Dracocephalum rupestreNepetoideae · Dracocephalum Stable locus 22 No matrix
Marrubium vulgareLamioideae · Marrubium Stable locus 22 No matrix
Mosla chinensisNepetoideae · Mosla Stable locus 22 No matrix
Mosla soochowensisNepetoideae · Mosla Stable locus 22 No matrix
Origanum vulgareNepetoideae · Origanum Stable locus 22 No matrix
Perilla citriodoraNepetoideae · Perilla Stable locus 22 No matrix
Perilla frutescens var. hirtellaNepetoideae · Perilla Stable locus 22 No matrix
Salvia miltiorrhizaNepetoideae · Salvia Stable locus 22 Available
Salvia sclareaNepetoideae · Salvia Stable locus 22 No matrix
Thymus quinquecostatusNepetoideae · Thymus Stable locus 22 No matrix
Agastache foeniculumNepetoideae · Agastache Stable locus 11 No matrix
Collinsonia canadensisNepetoideae · Collinsonia Stable locus 11 No matrix
Lycopus americanusNepetoideae · Lycopus Stable locus 11 No matrix
Mentha longifoliaNepetoideae · Mentha Stable locus 11 Available
Mentha spicataNepetoideae · Mentha Stable locus 11 No matrix
Mentha x piperitaNepetoideae · Mentha Stable locus 11 No matrix
Monarda didymaNepetoideae · Monarda Stable locus 11 No matrix
Origanum majoranaNepetoideae · Origanum Stable locus 11 No matrix
Salvia bowleyanaNepetoideae · Salvia Stable locus 11 No matrix
Salvia officinalisNepetoideae · Salvia Stable locus 11 No matrix
Schizonepeta tenuifoliaNepetoideae · Schizonepeta Stable locus 11 No matrix

Candidate records

Traceable candidate identifiers

Filter and inspect candidate identifiers for this family.

Clear
Candidate IDSpeciesPathway / familyEvidenceConfidenceIdentityHMM score
g3323.t1
Nepeta catariaAlkaloid · ISYblast+hmm High 100.0%802.9
MACO_g1628.t1
Marmoritis complanataAlkaloid · ISYblast+hmm High 95.9%799.9
AG34_scaffold8_09150T
Agastache rugosaAlkaloid · ISYblast+hmm High 93.1%799.1
AGFO_c24622_g1_i1_len_1763
Agastache foeniculumAlkaloid · ISYblast+hmm High 93.1%799.1
g2187.t1
Nepeta catariaAlkaloid · ISYblast+hmm High 97.7%796.5
g14139.t1
Nepeta mussiniiAlkaloid · ISYblast+hmm High 99.2%795.8
g31854.t1
Hyssopus officinalisAlkaloid · ISYblast+hmm High 91.8%791.2
Dru_6G0015170.1
Dracocephalum rupestreAlkaloid · ISYblast+hmm High 91.5%790.9
DRSE_g4158.t1
Drepanocaryum sewerzowiiAlkaloid · ISYblast+hmm High 94.8%789.1
AG34_scaffold8_09160T
Agastache rugosaAlkaloid · ISYblast+hmm High 91.8%787.7
GLHE_c66666_g2_i1_len_1659
Glechoma hederaceaAlkaloid · ISYblast+hmm High 91.8%786.8
PEAT_c40691_g1_i3_len_1791
Perovskia atriplicifoliaAlkaloid · ISYblast+hmm High 89.7%780.3
GlLon_026465-T1
Glechoma longitubaAlkaloid · ISYblast+hmm High 90.0%779.5
GlLon_014459-T1
Glechoma longitubaAlkaloid · ISYblast+hmm High 90.2%776.8
Es7B.G234300.t1
Elsholtzia splendensAlkaloid · ISYblast+hmm High 88.2%774.2
Es7A.G234900.t1
Elsholtzia splendensAlkaloid · ISYblast+hmm High 88.2%773.9
evm.model.chr2.655
Prunella vulgarisAlkaloid · ISYblast+hmm High 88.4%772.9
Sch000028499
Schizonepeta tenuifoliaAlkaloid · ISYblast+hmm High 89.5%772.5
g20623.t1
Nepeta catariaAlkaloid · ISYblast+hmm High 100.0%772.1
rna-gnl|WGS:QFCC|chr02_46688552_46689912.mrna1
Perilla frutescensAlkaloid · ISYblast+hmm High 87.7%771.7
rna-gnl|WGS:QFCC|chr05_39303939_39305299.mrna1
Perilla frutescensAlkaloid · ISYblast+hmm High 88.4%770.2
rna-gnl|WGS:QIYW|chr02_27544783_27546143.mrna1
Perilla citriodoraAlkaloid · ISYblast+hmm High 88.4%770.2
rna-gnl|WGS:QIYW|chr02_27544783_27546143.mrna1
Perilla frutescens var. hirtellaAlkaloid · ISYblast+hmm High 88.4%770.2
Ms_c007g02877.1
Mosla soochowensisAlkaloid · ISYblast+hmm High 87.1%769.9
Clgra_005802-T1
Clinopodium gracileAlkaloid · ISYblast+hmm High 83.3%769.7
MEOF_c17821_g2_i1_len_1652
Melissa officinalisAlkaloid · ISYblast+hmm High 86.9%769.5
GMPH_c27415_g2_i1_len_1657
Gmelina philippensisAlkaloid · ISYblast+hmm High 81.7%769.1
evm.model.Chr06.522
Callicarpa nudifloraAlkaloid · ISYblast+hmm High 84.8%768.5
SAOF_c10942_g1_i1_len_1588
Salvia officinalisAlkaloid · ISYblast+hmm High 86.9%768.2
MEPI_c61500_g1_i3_len_1605
Mentha x piperitaAlkaloid · ISYblast+hmm High 87.7%767.9
Mlonscaffold_11_length_299437840024180.1.v1.326
Mentha longifoliaAlkaloid · ISYblast+hmm High 87.4%767.9
LYAM_c4296_g1_i1_len_1752
Lycopus americanusAlkaloid · ISYblast+hmm High 87.2%767.8
Teum.05G025680.1
Teucrium marumAlkaloid · ISYblast+hmm High 84.3%766.9
tectona_grandis_Tg12g12090.t1
Tectona grandisAlkaloid · ISYblast+hmm High 82.5%766.9
COPY_c75708_g1_i4_len_1680
Cornutia pyramidataAlkaloid · ISYblast+hmm High 85.3%766.8
Teucrium_chamaedrys__Tcha115623
Teucrium chamaedrysAlkaloid · ISYblast+hmm High 84.6%766.8
Roff14320180560
Salvia rosmarinusAlkaloid · ISYblast+hmm High 88.3%766.6
Roff8300510500
Salvia rosmarinusAlkaloid · ISYblast+hmm High 87.2%766.6
COTO_c34596_g1_i1_len_1673
Congea tomentosaAlkaloid · ISYblast+hmm High 81.0%766.4
g10072.t1
Salvia sclareaAlkaloid · ISYblast+hmm High 88.0%766.3
Teucrium_chamaedrys__Tcha70559
Teucrium chamaedrysAlkaloid · ISYblast+hmm High 84.8%765.9
MESP_c40702_g1_i1_len_1635
Mentha spicataAlkaloid · ISYblast+hmm High 87.4%765.0
CLBU_c46287_g1_i1_len_1951
Clerodendrum bungeiAlkaloid · ISYblast+hmm High 83.0%764.8
evm.model.LG16.400
Clinopodium barosmumAlkaloid · ISYblast+hmm High 83.3%763.9
XP_047945773.1
Salvia hispanicaAlkaloid · ISYblast+hmm High 84.6%763.8
COCA_c64767_g1_i1_len_1599
Collinsonia canadensisAlkaloid · ISYblast+hmm High 86.9%763.2
XP_042062054.1
Salvia splendensAlkaloid · ISYblast+hmm High 84.3%763.0
XP_042061492.1
Salvia splendensAlkaloid · ISYblast+hmm High 84.6%762.9
evm.model.chr6.1501
Prunella vulgarisAlkaloid · ISYblast+hmm High 86.6%762.6
KAL1564525.1
Salvia divinorumAlkaloid · ISYblast+hmm High 84.3%762.4