LamiOmicsDB Lamiaceae Multi-Omics Database
v1 808 species · 3 phylogenies · 6,313 sequences

Pathway-family scientific record

ISY

ISY enzyme-family module

This module includes PlantSME enzyme-family assignments and traceable candidate protein identifiers from genome-derived or transcriptome-derived protein sets.

Browse candidatesCompare speciesCSV
Stable locus plantsmeAlkaloid-related biosynthesis
Public candidate IDs
349
Species with candidates
80
Species with assignments
80
Source assignments
349
Gene-tree candidates
0
Motif candidates
0

Evidence profile

Available evidence layers

◆Candidate identifiers349 public species-linked identifiers can be inspected.
GTGene-tree workflow0 comparable source candidates; 0 high-confidence source calls.
MMotif-screen proxy0 motif-screen candidates; 0 with all required motif proxies.
100 kbLocal clustering proxy0 clusters across 0 species; maximum cluster size 0.

Comparative signature

Lamiaceae comparison fields

Rate delta
Not calculated
Prevalence delta
Not calculated
Comparable source
PlantSME family assignments
Comparable source count
349
Public candidate count
349
Evidence mode
plantsme

Species coverage

Assignment and locus coverage by species

Source family counts and public candidate identifiers are shown in separate columns.

SpeciesEvidence stateSource countCandidate IDsExpression
Teucrium chamaedrysAjugoideae · Teucrium Stable locus 2626 No matrix
Pogostemon cablinLamioideae · Pogostemon Stable locus 2424 Available
Stenogyne calaminthoidesLamioideae · Stenogyne Stable locus 1313 No matrix
Callicarpa americanaCallicarpoideae · Callicarpa Stable locus 99 No matrix
Tectona grandisTectonoideae · Tectona Stable locus 99 Available
Callicarpa nudifloraCallicarpoideae · Callicarpa Stable locus 88 No matrix
Nepeta catariaNepetoideae · Nepeta Stable locus 88 Available
Ocimum basilicumNepetoideae · Ocimum Stable locus 88 Available
Phlomis fruticosaLamioideae · Phlomis Stable locus 88 No matrix
Phlomoides rotataLamioideae · Phlomoides Stable locus 88 No matrix
Salvia splendensNepetoideae · Salvia Stable locus 88 No matrix
Cornutia pyramidataPremnoideae · Cornutia Stable locus 66 No matrix
Ocimum tenuiflorumNepetoideae · Ocimum Stable locus 66 No matrix
Vitex agnus-castusViticoideae · Vitex Stable locus 66 No matrix
Ajuga decumbensAjugoideae · Ajuga Stable locus 55 No matrix
Ballota pseudodictamnusLamioideae · Ballota Stable locus 55 No matrix
Glechoma longitubaNepetoideae · Glechoma Stable locus 55 No matrix
Isodon serraNepetoideae · Isodon Stable locus 55 No matrix
Lamium albumLamioideae · Lamium Stable locus 55 No matrix
Nepeta mussiniiNepetoideae · Nepeta Stable locus 55 Available
Perovskia atriplicifoliaNepetoideae · Perovskia Stable locus 55 No matrix
Petraeovitex bambusetoriumPeronematoideae · Petraeovitex Stable locus 55 No matrix
Salvia rosmarinusNepetoideae · Salvia Stable locus 55 Available
Teucrium canadenseAjugoideae · Teucrium Stable locus 55 No matrix
Teucrium marumAjugoideae · Teucrium Stable locus 55 No matrix
Thymus vulgarisNepetoideae · Thymus Stable locus 55 No matrix
Clinopodium barosmumNepetoideae · Clinopodium Stable locus 44 No matrix
Elsholtzia splendensNepetoideae · Elsholtzia Stable locus 44 No matrix
Gmelina philippensisPremnoideae · Gmelina Stable locus 44 No matrix
Hyssopus officinalisNepetoideae · Hyssopus Stable locus 44 No matrix
Isodon lophanthoidesNepetoideae · Isodon Stable locus 44 No matrix
Lavandula angustifoliaNepetoideae · Lavandula Stable locus 44 No matrix
Leonurus japonicusLamioideae · Leonurus Stable locus 44 No matrix
Leonurus sibiricusLamioideae · Leonurus Stable locus 44 No matrix
Marmoritis complanataNepetoideae · Marmoritis Stable locus 44 No matrix
Perilla frutescensNepetoideae · Perilla Stable locus 44 No matrix
Plectranthus barbatusNepetoideae · Plectranthus Stable locus 44 No matrix
Prostanthera lasianthosProstantheroideae · Prostanthera Stable locus 44 No matrix
Prunella vulgarisNepetoideae · Prunella Stable locus 44 No matrix
Rotheca myricoidesAjugoideae · Rotheca Stable locus 44 No matrix
Westringia fruticosaProstantheroideae · Westringia Stable locus 44 No matrix
Agastache rugosaNepetoideae · Agastache Stable locus 33 No matrix
Ajuga reptansAjugoideae · Ajuga Stable locus 33 No matrix
Drepanocaryum sewerzowiiNepetoideae · Drepanocaryum Stable locus 33 No matrix
Glechoma hederaceaNepetoideae · Glechoma Stable locus 33 No matrix
Holmskioldia sanguineaScutellarioideae · Holmskioldia Stable locus 33 No matrix
Hyptis suaveolensNepetoideae · Hyptis Stable locus 33 No matrix
Leonotis leonurusLamioideae · Leonotis Stable locus 33 No matrix
Leonurus cardiacaLamioideae · Leonurus Stable locus 33 No matrix
Melissa officinalisNepetoideae · Melissa Stable locus 33 No matrix
Premna microphyllaPremnoideae · Premna Stable locus 33 No matrix
Salvia divinorumNepetoideae · Salvia Stable locus 33 No matrix
Salvia hispanicaNepetoideae · Salvia Stable locus 33 No matrix
Scutellaria baicalensisScutellarioideae · Scutellaria Stable locus 33 No matrix
Scutellaria barbataScutellarioideae · Scutellaria Stable locus 33 No matrix
Stachys officinalisLamioideae · Stachys Stable locus 33 No matrix
Clerodendrum bungeiAjugoideae · Clerodendrum Stable locus 22 No matrix
Clinopodium gracileNepetoideae · Clinopodium Stable locus 22 No matrix
Congea tomentosaSymphorematoideae · Congea Stable locus 22 No matrix
Dracocephalum rupestreNepetoideae · Dracocephalum Stable locus 22 No matrix
Marrubium vulgareLamioideae · Marrubium Stable locus 22 No matrix
Mosla chinensisNepetoideae · Mosla Stable locus 22 No matrix
Mosla soochowensisNepetoideae · Mosla Stable locus 22 No matrix
Origanum vulgareNepetoideae · Origanum Stable locus 22 No matrix
Perilla citriodoraNepetoideae · Perilla Stable locus 22 No matrix
Perilla frutescens var. hirtellaNepetoideae · Perilla Stable locus 22 No matrix
Salvia miltiorrhizaNepetoideae · Salvia Stable locus 22 Available
Salvia sclareaNepetoideae · Salvia Stable locus 22 No matrix
Thymus quinquecostatusNepetoideae · Thymus Stable locus 22 No matrix
Agastache foeniculumNepetoideae · Agastache Stable locus 11 No matrix
Collinsonia canadensisNepetoideae · Collinsonia Stable locus 11 No matrix
Lycopus americanusNepetoideae · Lycopus Stable locus 11 No matrix
Mentha longifoliaNepetoideae · Mentha Stable locus 11 Available
Mentha spicataNepetoideae · Mentha Stable locus 11 No matrix
Mentha x piperitaNepetoideae · Mentha Stable locus 11 No matrix
Monarda didymaNepetoideae · Monarda Stable locus 11 No matrix
Origanum majoranaNepetoideae · Origanum Stable locus 11 No matrix
Salvia bowleyanaNepetoideae · Salvia Stable locus 11 No matrix
Salvia officinalisNepetoideae · Salvia Stable locus 11 No matrix
Schizonepeta tenuifoliaNepetoideae · Schizonepeta Stable locus 11 No matrix

Candidate records

Traceable candidate identifiers

Filter and inspect candidate identifiers for this family.

Clear
Candidate IDSpeciesPathway / familyEvidenceConfidenceIdentityHMM score
KAL8554671.1
Phlomoides rotataAlkaloid · ISYblast+hmm High 82.3%742.2
Pat_B02G049400.m1
Pogostemon cablinAlkaloid · ISYblast+hmm High 81.9%740.1
HYSU_c23704_g1_i2_len_1465
Hyptis suaveolensAlkaloid · ISYblast+hmm High 73.5%739.7
Pat_A02G073500.m1
Pogostemon cablinAlkaloid · ISYblast+hmm High 81.9%739.5
Pat_A01G075900.m2
Pogostemon cablinAlkaloid · ISYblast+hmm High 81.9%737.9
LAAN_c52476_g1_i1_len_1822
Lavandula angustifoliaAlkaloid · ISYblast+hmm High 81.0%736.8
XP_047980856.1
Salvia hispanicaAlkaloid · ISYblast+hmm High 83.0%730.2
tectona_grandis_Tg12g12070.t1
Tectona grandisAlkaloid · ISYblast+hmm High 75.9%724.9
evm.model.Chr10.1144
Callicarpa nudifloraAlkaloid · ISYblast+hmm High 79.7%724.1
tectona_grandis_Tg12g12080.t1
Tectona grandisAlkaloid · ISYblast+hmm High 79.3%723.5
Pat_A01G075900.m1
Pogostemon cablinAlkaloid · ISYblast+hmm High 81.8%722.9
CAame11G0023060.v1.94
Callicarpa americanaAlkaloid · ISYblast+hmm High 79.5%722.3
Pat_B01G058700.m1
Pogostemon cablinAlkaloid · ISYblast+hmm High 81.5%721.9
Pat_B01G058700.m2
Pogostemon cablinAlkaloid · ISYblast+hmm High 81.5%721.3
VIAG_c37746_g1_i1_len_1913
Vitex agnus-castusAlkaloid · ISYblast+hmm High 77.4%717.1
GMPH_c60122_g1_i1_len_1388
Gmelina philippensisAlkaloid · ISYblast+hmm High 77.7%712.2
1968.g179.t1
Ocimum basilicumAlkaloid · ISYblast+hmm High 76.3%708.8
AJRE_c42095_g1_i1_len_1374
Ajuga reptansAlkaloid · ISYblast+hmm High 82.1%706.4
Teum.05G025680.2
Teucrium marumAlkaloid · ISYblast+hmm High 80.7%706.3
TECA_c9221_g1_i1_len_1666
Teucrium canadenseAlkaloid · ISYblast+hmm High 76.7%703.7
tectona_grandis_Tg12g12110.t1
Tectona grandisAlkaloid · ISYblast+hmm High 71.4%703.5
CAame04G0010420.v1.94
Callicarpa americanaAlkaloid · ISYblast+hmm High 70.4%701.3
HOSA_c46340_g1_i1_len_1562
Holmskioldia sanguineaAlkaloid · ISYblast+hmm High 77.9%701.3
evm.model.Chr06.521
Callicarpa nudifloraAlkaloid · ISYblast+hmm High 70.2%699.9
AJRE_c28456_g1_i1_len_1584
Ajuga reptansAlkaloid · ISYblast+hmm High 76.2%698.6
PRLA_c53501_g1_i1_len_1467
Prostanthera lasianthosAlkaloid · ISYblast+hmm High 77.7%696.7
g4991.t1
Ajuga decumbensAlkaloid · ISYblast+hmm High 76.2%696.7
tectona_grandis_Tg12g12100.t1
Tectona grandisAlkaloid · ISYblast+hmm High 70.1%694.6
Ls1g29480.1
Leonurus sibiricusAlkaloid · ISYblast+hmm High 74.9%693.8
PEBA_c38829_g2_i1_len_1567
Petraeovitex bambusetoriumAlkaloid · ISYblast+hmm High 85.5%692.2
g4992.t1
Ajuga decumbensAlkaloid · ISYblast+hmm High 88.6%691.9
g4992.t2
Ajuga decumbensAlkaloid · ISYblast+hmm High 88.6%691.8
CAame11G0023050.v1.94
Callicarpa americanaAlkaloid · ISYblast+hmm High 85.8%691.6
evm.model.Chr10.1143
Callicarpa nudifloraAlkaloid · ISYblast+hmm High 86.5%691.0
AJRE_c37732_g1_i1_len_1590
Ajuga reptansAlkaloid · ISYblast+hmm High 88.1%690.6
Teucrium_chamaedrys__Tcha177640
Teucrium chamaedrysAlkaloid · ISYblast+hmm High 76.7%690.0
GMPH_c27415_g1_i1_len_1834
Gmelina philippensisAlkaloid · ISYblast+hmm High 86.6%687.7
Teucrium_chamaedrys__Tcha44112
Teucrium chamaedrysAlkaloid · ISYblast+hmm High 86.0%686.9
CLBU_c44814_g1_i1_len_1433
Clerodendrum bungeiAlkaloid · ISYblast+hmm High 73.1%685.9
HOSA_c52525_g1_i1_len_1549
Holmskioldia sanguineaAlkaloid · ISYblast+hmm High 85.5%685.1
PEBA_c40031_g2_i1_len_1860
Petraeovitex bambusetoriumAlkaloid · ISYblast+hmm High 75.4%684.1
TECA_c79935_g1_i1_len_1401
Teucrium canadenseAlkaloid · ISYblast+hmm High 85.5%683.6
LECA_c26634_g1_i1_len_1614
Leonurus cardiacaAlkaloid · ISYblast+hmm High 75.2%682.8
Teucrium_chamaedrys__Tcha177629
Teucrium chamaedrysAlkaloid · ISYblast+hmm High 85.8%682.7
PRLA_c59261_g3_i2_len_2055
Prostanthera lasianthosAlkaloid · ISYblast+hmm High 86.5%681.8
WEFR_c41879_g1_i1_len_1347
Westringia fruticosaAlkaloid · ISYblast+hmm High 77.4%681.7
VIAG_c32524_g1_i1_len_1614
Vitex agnus-castusAlkaloid · ISYblast+hmm High 85.5%680.4
STOF_c60352_g1_i1_len_1646
Stachys officinalisAlkaloid · ISYblast+hmm High 83.6%678.4
ROMY_c71553_g2_i1_len_1810
Rotheca myricoidesAlkaloid · ISYblast+hmm High 76.2%678.1
WEFR_c42301_g1_i1_len_1806
Westringia fruticosaAlkaloid · ISYblast+hmm High 87.3%676.7