LamiOmicsDB Lamiaceae Multi-Omics Database
v1 808 species · 3 phylogenies · 6,313 sequences

Pathway-family scientific record

ISY

ISY enzyme-family module

This module includes PlantSME enzyme-family assignments and traceable candidate protein identifiers from genome-derived or transcriptome-derived protein sets.

Browse candidatesCompare speciesCSV
Stable locus plantsmeAlkaloid-related biosynthesis
Public candidate IDs
349
Species with candidates
80
Species with assignments
80
Source assignments
349
Gene-tree candidates
0
Motif candidates
0

Evidence profile

Available evidence layers

◆Candidate identifiers349 public species-linked identifiers can be inspected.
GTGene-tree workflow0 comparable source candidates; 0 high-confidence source calls.
MMotif-screen proxy0 motif-screen candidates; 0 with all required motif proxies.
100 kbLocal clustering proxy0 clusters across 0 species; maximum cluster size 0.

Comparative signature

Lamiaceae comparison fields

Rate delta
Not calculated
Prevalence delta
Not calculated
Comparable source
PlantSME family assignments
Comparable source count
349
Public candidate count
349
Evidence mode
plantsme

Species coverage

Assignment and locus coverage by species

Source family counts and public candidate identifiers are shown in separate columns.

SpeciesEvidence stateSource countCandidate IDsExpression
Teucrium chamaedrysAjugoideae · Teucrium Stable locus 2626 No matrix
Pogostemon cablinLamioideae · Pogostemon Stable locus 2424 Available
Stenogyne calaminthoidesLamioideae · Stenogyne Stable locus 1313 No matrix
Callicarpa americanaCallicarpoideae · Callicarpa Stable locus 99 No matrix
Tectona grandisTectonoideae · Tectona Stable locus 99 Available
Callicarpa nudifloraCallicarpoideae · Callicarpa Stable locus 88 No matrix
Nepeta catariaNepetoideae · Nepeta Stable locus 88 Available
Ocimum basilicumNepetoideae · Ocimum Stable locus 88 Available
Phlomis fruticosaLamioideae · Phlomis Stable locus 88 No matrix
Phlomoides rotataLamioideae · Phlomoides Stable locus 88 No matrix
Salvia splendensNepetoideae · Salvia Stable locus 88 No matrix
Cornutia pyramidataPremnoideae · Cornutia Stable locus 66 No matrix
Ocimum tenuiflorumNepetoideae · Ocimum Stable locus 66 No matrix
Vitex agnus-castusViticoideae · Vitex Stable locus 66 No matrix
Ajuga decumbensAjugoideae · Ajuga Stable locus 55 No matrix
Ballota pseudodictamnusLamioideae · Ballota Stable locus 55 No matrix
Glechoma longitubaNepetoideae · Glechoma Stable locus 55 No matrix
Isodon serraNepetoideae · Isodon Stable locus 55 No matrix
Lamium albumLamioideae · Lamium Stable locus 55 No matrix
Nepeta mussiniiNepetoideae · Nepeta Stable locus 55 Available
Perovskia atriplicifoliaNepetoideae · Perovskia Stable locus 55 No matrix
Petraeovitex bambusetoriumPeronematoideae · Petraeovitex Stable locus 55 No matrix
Salvia rosmarinusNepetoideae · Salvia Stable locus 55 Available
Teucrium canadenseAjugoideae · Teucrium Stable locus 55 No matrix
Teucrium marumAjugoideae · Teucrium Stable locus 55 No matrix
Thymus vulgarisNepetoideae · Thymus Stable locus 55 No matrix
Clinopodium barosmumNepetoideae · Clinopodium Stable locus 44 No matrix
Elsholtzia splendensNepetoideae · Elsholtzia Stable locus 44 No matrix
Gmelina philippensisPremnoideae · Gmelina Stable locus 44 No matrix
Hyssopus officinalisNepetoideae · Hyssopus Stable locus 44 No matrix
Isodon lophanthoidesNepetoideae · Isodon Stable locus 44 No matrix
Lavandula angustifoliaNepetoideae · Lavandula Stable locus 44 No matrix
Leonurus japonicusLamioideae · Leonurus Stable locus 44 No matrix
Leonurus sibiricusLamioideae · Leonurus Stable locus 44 No matrix
Marmoritis complanataNepetoideae · Marmoritis Stable locus 44 No matrix
Perilla frutescensNepetoideae · Perilla Stable locus 44 No matrix
Plectranthus barbatusNepetoideae · Plectranthus Stable locus 44 No matrix
Prostanthera lasianthosProstantheroideae · Prostanthera Stable locus 44 No matrix
Prunella vulgarisNepetoideae · Prunella Stable locus 44 No matrix
Rotheca myricoidesAjugoideae · Rotheca Stable locus 44 No matrix
Westringia fruticosaProstantheroideae · Westringia Stable locus 44 No matrix
Agastache rugosaNepetoideae · Agastache Stable locus 33 No matrix
Ajuga reptansAjugoideae · Ajuga Stable locus 33 No matrix
Drepanocaryum sewerzowiiNepetoideae · Drepanocaryum Stable locus 33 No matrix
Glechoma hederaceaNepetoideae · Glechoma Stable locus 33 No matrix
Holmskioldia sanguineaScutellarioideae · Holmskioldia Stable locus 33 No matrix
Hyptis suaveolensNepetoideae · Hyptis Stable locus 33 No matrix
Leonotis leonurusLamioideae · Leonotis Stable locus 33 No matrix
Leonurus cardiacaLamioideae · Leonurus Stable locus 33 No matrix
Melissa officinalisNepetoideae · Melissa Stable locus 33 No matrix
Premna microphyllaPremnoideae · Premna Stable locus 33 No matrix
Salvia divinorumNepetoideae · Salvia Stable locus 33 No matrix
Salvia hispanicaNepetoideae · Salvia Stable locus 33 No matrix
Scutellaria baicalensisScutellarioideae · Scutellaria Stable locus 33 No matrix
Scutellaria barbataScutellarioideae · Scutellaria Stable locus 33 No matrix
Stachys officinalisLamioideae · Stachys Stable locus 33 No matrix
Clerodendrum bungeiAjugoideae · Clerodendrum Stable locus 22 No matrix
Clinopodium gracileNepetoideae · Clinopodium Stable locus 22 No matrix
Congea tomentosaSymphorematoideae · Congea Stable locus 22 No matrix
Dracocephalum rupestreNepetoideae · Dracocephalum Stable locus 22 No matrix
Marrubium vulgareLamioideae · Marrubium Stable locus 22 No matrix
Mosla chinensisNepetoideae · Mosla Stable locus 22 No matrix
Mosla soochowensisNepetoideae · Mosla Stable locus 22 No matrix
Origanum vulgareNepetoideae · Origanum Stable locus 22 No matrix
Perilla citriodoraNepetoideae · Perilla Stable locus 22 No matrix
Perilla frutescens var. hirtellaNepetoideae · Perilla Stable locus 22 No matrix
Salvia miltiorrhizaNepetoideae · Salvia Stable locus 22 Available
Salvia sclareaNepetoideae · Salvia Stable locus 22 No matrix
Thymus quinquecostatusNepetoideae · Thymus Stable locus 22 No matrix
Agastache foeniculumNepetoideae · Agastache Stable locus 11 No matrix
Collinsonia canadensisNepetoideae · Collinsonia Stable locus 11 No matrix
Lycopus americanusNepetoideae · Lycopus Stable locus 11 No matrix
Mentha longifoliaNepetoideae · Mentha Stable locus 11 Available
Mentha spicataNepetoideae · Mentha Stable locus 11 No matrix
Mentha x piperitaNepetoideae · Mentha Stable locus 11 No matrix
Monarda didymaNepetoideae · Monarda Stable locus 11 No matrix
Origanum majoranaNepetoideae · Origanum Stable locus 11 No matrix
Salvia bowleyanaNepetoideae · Salvia Stable locus 11 No matrix
Salvia officinalisNepetoideae · Salvia Stable locus 11 No matrix
Schizonepeta tenuifoliaNepetoideae · Schizonepeta Stable locus 11 No matrix

Candidate records

Traceable candidate identifiers

Filter and inspect candidate identifiers for this family.

Clear
Candidate IDSpeciesPathway / familyEvidenceConfidenceIdentityHMM score
Pat_B09G105100.m1
Pogostemon cablinAlkaloid · ISYblast+hmm High 67.5%124.2
PHFR_c41532_g1_i1_len_365
Phlomis fruticosaAlkaloid · ISYblast+hmm High 84.8%120.6
PEBA_c30340_g1_i1_len_400
Petraeovitex bambusetoriumAlkaloid · ISYblast+hmm High 92.1%116.3
evm.model.LG02.678
Clinopodium barosmumAlkaloid · ISYblast+hmm High 36.4%104.7
VIAG_c29303_g1_i2_len_446
Vitex agnus-castusAlkaloid · ISYblast+hmm High 66.7%98.6
TECA_c78816_g1_i1_len_270
Teucrium canadenseAlkaloid · ISYblast+hmm High 79.4%98.4
CAame06G0006220.v1.94
Callicarpa americanaAlkaloid · ISYblast+hmm High 45.5%94.4
Roff3497650398090
Salvia rosmarinusAlkaloid · ISYblast+hmm High 49.6%87.2
ROMY_c100548_g1_i1_len_257
Rotheca myricoidesAlkaloid · ISYblast+hmm High 56.1%70.8
VIAG_c94445_g1_i1_len_509
Vitex agnus-castusAlkaloid · ISYblast+hmm High 61.1%62.6
PLBA_c9924_g1_i1_len_625
Plectranthus barbatusAlkaloid · ISYblast+hmm High 31.8%55.8
Stenogyne_calaminthoides__EVM_prediction_HiC_scaffold_37.21.mRNA1
Stenogyne calaminthoidesAlkaloid · ISYblast+hmm High 69.6%54.3
evm.model.ptg000008l.73
Isodon serraAlkaloid · ISYblast+hmm High 83.3%52.9
Stenogyne_calaminthoides__EVM_prediction_HiC_scaffold_343.1.mRNA1
Stenogyne calaminthoidesAlkaloid · ISYblast+hmm Medium 87.8%140.3
evm.model.Chr02.291
Callicarpa nudifloraAlkaloid · ISYblast+hmm Medium 81.2%135.8
Stenogyne_calaminthoides__EVM_prediction_HiC_scaffold_5.1468.mRNA1
Stenogyne calaminthoidesAlkaloid · ISYblast+hmm Medium 52.2%133.8
Pat_A09G127900.m1
Pogostemon cablinAlkaloid · ISYblast+hmm Medium 92.2%92.3
Teucrium_chamaedrys__Tcha124561
Teucrium chamaedrysAlkaloid · ISYblast+hmm Medium 83.7%85.2
CAame11G0024070.v1.94
Callicarpa americanaAlkaloid · ISYblast+hmm Medium 76.8%68.9
Stenogyne_calaminthoides__EVM_prediction_HiC_scaffold_26.283.mRNA1
Stenogyne calaminthoidesAlkaloid · ISYblast+hmm Medium 73.5%51.8
tectona_grandis_Tg08g14960.t1
Tectona grandisAlkaloid · ISYblast+hmm Medium 26.9%50.2
Stenogyne_calaminthoides__EVM_prediction_HiC_scaffold_37.22.mRNA1
Stenogyne calaminthoidesAlkaloid · ISYblast+hmm Medium 57.6%32.9
Stenogyne_calaminthoides__EVM_prediction_HiC_scaffold_39.1462.mRNA1
Stenogyne calaminthoidesAlkaloid · ISYhmm Medium —288.1
PEAT_c24142_g1_i1_len_1161
Perovskia atriplicifoliaAlkaloid · ISYhmm Medium —283.0
Roff10490062930
Salvia rosmarinusAlkaloid · ISYhmm Medium —277.1
g14530.t1
Nepeta catariaAlkaloid · ISYhmm Medium —276.8
Sbow07G0007380.1
Salvia bowleyanaAlkaloid · ISYhmm Medium —275.4
g18339.t1
Nepeta catariaAlkaloid · ISYhmm Medium —272.6
g6070.t1
Nepeta mussiniiAlkaloid · ISYhmm Medium —271.1
MACO_g23912.t1
Marmoritis complanataAlkaloid · ISYhmm Medium —271.0
MACO_g23892.t1
Marmoritis complanataAlkaloid · ISYhmm Medium —270.1
DRSE_g11252.t1
Drepanocaryum sewerzowiiAlkaloid · ISYhmm Medium —268.7
384868.g97.t1
Ocimum basilicumAlkaloid · ISYhmm Medium —267.8
evm.model.chr14.524
Prunella vulgarisAlkaloid · ISYhmm Medium —267.7
Smil04G0024300.1.v1.484
Salvia miltiorrhizaAlkaloid · ISYhmm Medium —263.1
GlLon_024021-T1
Glechoma longitubaAlkaloid · ISYhmm Medium —262.5
Dru_2G0034980.1
Dracocephalum rupestreAlkaloid · ISYhmm Medium —258.1
Clgra_026815-T1
Clinopodium gracileAlkaloid · ISYhmm Medium —119.6
LAAN_c110602_g1_i1_len_605
Lavandula angustifoliaAlkaloid · ISYhmm Medium —107.9
HYSU_c11484_g1_i2_len_378
Hyptis suaveolensAlkaloid · ISYhmm Medium —90.0
Teucrium_chamaedrys__Tcha96014
Teucrium chamaedrysAlkaloid · ISYhmm Medium —82.2
PLBA_c93634_g1_i1_len_305
Plectranthus barbatusAlkaloid · ISYhmm Medium —70.9
ROMY_c87382_g1_i1_len_263
Rotheca myricoidesAlkaloid · ISYhmm Medium —61.8
WEFR_c119921_g1_i1_len_266
Westringia fruticosaAlkaloid · ISYhmm Medium —52.2
COPY_c107567_g1_i1_len_281
Cornutia pyramidataAlkaloid · ISYhmm Medium —44.9
GLHE_c20925_g1_i1_len_256
Glechoma hederaceaAlkaloid · ISYhmm Medium —33.7
COTO_c79711_g1_i1_len_490
Congea tomentosaAlkaloid · ISYhmm Medium —27.1
COPY_c6899_g1_i1_len_283
Cornutia pyramidataAlkaloid · ISYhmm Medium —25.1
PHFR_c49314_g1_i1_len_447
Phlomis fruticosaAlkaloid · ISYhmm Medium —20.8