LamiOmicsDB Lamiaceae Multi-Omics Database
v1 808 species · 3 phylogenies · 6,313 sequences

Pathway-family scientific record

4CL

4-coumarate--CoA ligase family

This module includes PlantSME enzyme-family assignments and traceable candidate protein identifiers from genome-derived or transcriptome-derived protein sets.

Browse candidatesCompare speciesCSV
Stable locus plantsmeFlavonoid biosynthesis
Public candidate IDs
3,999
Species with candidates
80
Species with assignments
80
Source assignments
7,323
Gene-tree candidates
0
Motif candidates
0

Evidence profile

Available evidence layers

◆Candidate identifiers3,999 public species-linked identifiers can be inspected.
GTGene-tree workflow0 comparable source candidates; 0 high-confidence source calls.
MMotif-screen proxy0 motif-screen candidates; 0 with all required motif proxies.
100 kbLocal clustering proxy0 clusters across 0 species; maximum cluster size 0.

Comparative signature

Lamiaceae comparison fields

Rate delta
Not calculated
Prevalence delta
Not calculated
Comparable source
PlantSME family assignments
Comparable source count
7,323
Public candidate count
3,999
Evidence mode
plantsme

Species coverage

Assignment and locus coverage by species

Source family counts and public candidate identifiers are shown in separate columns.

SpeciesEvidence stateSource countCandidate IDsExpression
Teucrium chamaedrysAjugoideae · Teucrium Stable locus 33250 No matrix
Pogostemon cablinLamioideae · Pogostemon Stable locus 29950 Available
Nepeta catariaNepetoideae · Nepeta Stable locus 19850 Available
Teucrium marumAjugoideae · Teucrium Stable locus 18650 No matrix
Ocimum basilicumNepetoideae · Ocimum Stable locus 18550 Available
Salvia splendensNepetoideae · Salvia Stable locus 15750 No matrix
Elsholtzia splendensNepetoideae · Elsholtzia Stable locus 14350 No matrix
Stenogyne calaminthoidesLamioideae · Stenogyne Stable locus 14350 No matrix
Callicarpa americanaCallicarpoideae · Callicarpa Stable locus 13150 No matrix
Cornutia pyramidataPremnoideae · Cornutia Stable locus 12350 No matrix
Phlomoides rotataLamioideae · Phlomoides Stable locus 11950 No matrix
Salvia rosmarinusNepetoideae · Salvia Stable locus 11750 Available
Hyssopus officinalisNepetoideae · Hyssopus Stable locus 11150 No matrix
Clinopodium barosmumNepetoideae · Clinopodium Stable locus 10850 No matrix
Perilla frutescensNepetoideae · Perilla Stable locus 10750 No matrix
Nepeta mussiniiNepetoideae · Nepeta Stable locus 9950 Available
Origanum vulgareNepetoideae · Origanum Stable locus 9850 No matrix
Ocimum tenuiflorumNepetoideae · Ocimum Stable locus 9750 No matrix
Phlomis fruticosaLamioideae · Phlomis Stable locus 9650 No matrix
Salvia hispanicaNepetoideae · Salvia Stable locus 9650 No matrix
Rotheca myricoidesAjugoideae · Rotheca Stable locus 9550 No matrix
Origanum majoranaNepetoideae · Origanum Stable locus 9450 No matrix
Hyptis suaveolensNepetoideae · Hyptis Stable locus 9350 No matrix
Collinsonia canadensisNepetoideae · Collinsonia Stable locus 9250 No matrix
Salvia divinorumNepetoideae · Salvia Stable locus 9250 No matrix
Prunella vulgarisNepetoideae · Prunella Stable locus 9150 No matrix
Thymus vulgarisNepetoideae · Thymus Stable locus 9150 No matrix
Ballota pseudodictamnusLamioideae · Ballota Stable locus 9050 No matrix
Mentha x piperitaNepetoideae · Mentha Stable locus 8750 No matrix
Salvia bowleyanaNepetoideae · Salvia Stable locus 8650 No matrix
Dracocephalum rupestreNepetoideae · Dracocephalum Stable locus 8550 No matrix
Lavandula angustifoliaNepetoideae · Lavandula Stable locus 8450 No matrix
Monarda didymaNepetoideae · Monarda Stable locus 8150 No matrix
Plectranthus barbatusNepetoideae · Plectranthus Stable locus 8150 No matrix
Tectona grandisTectonoideae · Tectona Stable locus 8150 Available
Glechoma longitubaNepetoideae · Glechoma Stable locus 8050 No matrix
Lycopus americanusNepetoideae · Lycopus Stable locus 8050 No matrix
Mentha spicataNepetoideae · Mentha Stable locus 8050 No matrix
Westringia fruticosaProstantheroideae · Westringia Stable locus 8050 No matrix
Holmskioldia sanguineaScutellarioideae · Holmskioldia Stable locus 7950 No matrix
Ajuga decumbensAjugoideae · Ajuga Stable locus 7850 No matrix
Petraeovitex bambusetoriumPeronematoideae · Petraeovitex Stable locus 7750 No matrix
Clinopodium gracileNepetoideae · Clinopodium Stable locus 7650 No matrix
Glechoma hederaceaNepetoideae · Glechoma Stable locus 7650 No matrix
Mosla soochowensisNepetoideae · Mosla Stable locus 7650 No matrix
Stachys officinalisLamioideae · Stachys Stable locus 7550 No matrix
Thymus quinquecostatusNepetoideae · Thymus Stable locus 7550 No matrix
Melissa officinalisNepetoideae · Melissa Stable locus 7450 No matrix
Perovskia atriplicifoliaNepetoideae · Perovskia Stable locus 7450 No matrix
Prostanthera lasianthosProstantheroideae · Prostanthera Stable locus 7450 No matrix
Mosla chinensisNepetoideae · Mosla Stable locus 7350 No matrix
Premna microphyllaPremnoideae · Premna Stable locus 7350 No matrix
Congea tomentosaSymphorematoideae · Congea Stable locus 7150 No matrix
Gmelina philippensisPremnoideae · Gmelina Stable locus 7150 No matrix
Marrubium vulgareLamioideae · Marrubium Stable locus 7150 No matrix
Lamium albumLamioideae · Lamium Stable locus 7050 No matrix
Callicarpa nudifloraCallicarpoideae · Callicarpa Stable locus 6950 No matrix
Isodon lophanthoidesNepetoideae · Isodon Stable locus 6850 No matrix
Agastache foeniculumNepetoideae · Agastache Stable locus 6750 No matrix
Scutellaria baicalensisScutellarioideae · Scutellaria Stable locus 6750 No matrix
Salvia miltiorrhizaNepetoideae · Salvia Stable locus 6650 Available
Drepanocaryum sewerzowiiNepetoideae · Drepanocaryum Stable locus 6550 No matrix
Isodon serraNepetoideae · Isodon Stable locus 6550 No matrix
Salvia officinalisNepetoideae · Salvia Stable locus 6550 No matrix
Scutellaria barbataScutellarioideae · Scutellaria Stable locus 6550 No matrix
Ajuga reptansAjugoideae · Ajuga Stable locus 6450 No matrix
Leonurus cardiacaLamioideae · Leonurus Stable locus 6450 No matrix
Vitex agnus-castusViticoideae · Vitex Stable locus 6450 No matrix
Mentha longifoliaNepetoideae · Mentha Stable locus 6350 Available
Agastache rugosaNepetoideae · Agastache Stable locus 6250 No matrix
Leonotis leonurusLamioideae · Leonotis Stable locus 6250 No matrix
Clerodendrum bungeiAjugoideae · Clerodendrum Stable locus 6050 No matrix
Marmoritis complanataNepetoideae · Marmoritis Stable locus 5850 No matrix
Teucrium canadenseAjugoideae · Teucrium Stable locus 5850 No matrix
Leonurus japonicusLamioideae · Leonurus Stable locus 5750 No matrix
Perilla citriodoraNepetoideae · Perilla Stable locus 5750 No matrix
Perilla frutescens var. hirtellaNepetoideae · Perilla Stable locus 5750 No matrix
Leonurus sibiricusLamioideae · Leonurus Stable locus 5050 No matrix
Salvia sclareaNepetoideae · Salvia Stable locus 5050 No matrix
Schizonepeta tenuifoliaNepetoideae · Schizonepeta Stable locus 4949 No matrix

Candidate records

Traceable candidate identifiers

Filter and inspect candidate identifiers for this family.

Clear
Candidate IDSpeciesPathway / familyEvidenceConfidenceIdentityHMM score
evm.model.ptg000016l.595
Isodon serraFlavonoid · 4CLblast+hmm High 82.0%888.2
XP_041999337.1
Salvia splendensFlavonoid · 4CLblast+hmm High 78.8%888.1
evm.model.ptg000008l.1123
Isodon serraFlavonoid · 4CLblast+hmm High 79.6%888.1
g39732.t1
Hyssopus officinalisFlavonoid · 4CLblast+hmm High 82.4%888.1
Pat_A08G180000.m2
Pogostemon cablinFlavonoid · 4CLblast+hmm High 80.7%888.0
evm.model.chr8.4136
Prunella vulgarisFlavonoid · 4CLblast+hmm High 81.5%887.9
Dru_6G0000550.1
Dracocephalum rupestreFlavonoid · 4CLblast+hmm High 82.0%887.7
377587.g14.t1
Ocimum basilicumFlavonoid · 4CLblast+hmm High 81.3%887.6
PLBA_c40499_g1_i1_len_1791
Plectranthus barbatusFlavonoid · 4CLblast+hmm High 82.2%887.6
g26195.t1
Ajuga decumbensFlavonoid · 4CLblast+hmm High 81.3%887.5
COCA_c62284_g2_i1_len_1992
Collinsonia canadensisFlavonoid · 4CLblast+hmm High 82.0%887.4
COPY_c78129_g4_i3_len_2070
Cornutia pyramidataFlavonoid · 4CLblast+hmm High 84.3%887.4
COPY_c78679_g1_i1_len_1847
Cornutia pyramidataFlavonoid · 4CLblast+hmm High 81.9%887.4
Clgra_011631-T1
Clinopodium gracileFlavonoid · 4CLblast+hmm High 80.4%887.2
MEOF_c11600_g2_i1_len_1931
Melissa officinalisFlavonoid · 4CLblast+hmm High 82.8%886.9
PEAT_c38018_g2_i2_len_1788
Perovskia atriplicifoliaFlavonoid · 4CLblast+hmm High 82.4%886.9
LECA_c31681_g1_i2_len_1933
Leonurus cardiacaFlavonoid · 4CLblast+hmm High 81.9%886.6
TECA_c21721_g1_i1_len_1954
Teucrium canadenseFlavonoid · 4CLblast+hmm High 81.9%886.6
GWHPBJVA027818
Thymus quinquecostatusFlavonoid · 4CLblast+hmm High 81.3%886.2
g16610.t1
Nepeta mussiniiFlavonoid · 4CLblast+hmm High 80.0%886.0
KAL1554074.1
Salvia divinorumFlavonoid · 4CLblast+hmm High 78.8%885.4
Pat_B08G169700.m1
Pogostemon cablinFlavonoid · 4CLblast+hmm High 80.5%885.4
g3862.t1
Salvia sclareaFlavonoid · 4CLblast+hmm High 82.2%885.4
g11475.t1
Salvia sclareaFlavonoid · 4CLblast+hmm High 80.5%884.9
Smil03G0030000.1.v1.484
Salvia miltiorrhizaFlavonoid · 4CLblast+hmm High 82.0%884.5
Sbow05G0009520.1
Salvia bowleyanaFlavonoid · 4CLblast+hmm High 81.9%884.4
AGFO_c20267_g1_i2_len_1957
Agastache foeniculumFlavonoid · 4CLblast+hmm High 80.5%883.9
MEPI_c62785_g1_i1_len_1882
Mentha x piperitaFlavonoid · 4CLblast+hmm High 80.5%883.8
Sch000016091
Schizonepeta tenuifoliaFlavonoid · 4CLblast+hmm High 80.3%883.7
PRMI_c36449_g1_i1_len_1986
Premna microphyllaFlavonoid · 4CLblast+hmm High 81.1%883.3
AG34_scaffold8_18420T
Agastache rugosaFlavonoid · 4CLblast+hmm High 82.4%882.8
XP_047941734.1
Salvia hispanicaFlavonoid · 4CLblast+hmm High 79.0%882.5
Mlonscaffold_2_length_455260290073290.1.v1.326
Mentha longifoliaFlavonoid · 4CLblast+hmm High 79.9%882.1
SAOF_c29199_g2_i2_len_1899
Salvia officinalisFlavonoid · 4CLblast+hmm High 81.5%882.1
MAVU_c24992_g1_i1_len_2053
Marrubium vulgareFlavonoid · 4CLblast+hmm High 82.0%881.9
Smil07G0004050.1.v1.484
Salvia miltiorrhizaFlavonoid · 4CLblast+hmm High 79.0%881.8
Sch000024719
Schizonepeta tenuifoliaFlavonoid · 4CLblast+hmm High 82.1%881.6
XP_042000649.1
Salvia splendensFlavonoid · 4CLblast+hmm High 78.1%881.6
382864.g1.t1
Ocimum basilicumFlavonoid · 4CLblast+hmm High 80.6%881.5
XP_041990970.1
Salvia splendensFlavonoid · 4CLblast+hmm High 81.7%881.5
383331.g62.t1
Ocimum basilicumFlavonoid · 4CLblast+hmm High 81.0%881.4
MODI_c42556_g1_i1_len_1926
Monarda didymaFlavonoid · 4CLblast+hmm High 79.6%881.3
GLHE_c65414_g2_i1_len_1940
Glechoma hederaceaFlavonoid · 4CLblast+hmm High 80.0%881.1
g10426.t1
Nepeta catariaFlavonoid · 4CLblast+hmm High 80.2%881.1
KAL1559017.1
Salvia divinorumFlavonoid · 4CLblast+hmm High 82.2%881.0
Roff10520071130
Salvia rosmarinusFlavonoid · 4CLblast+hmm High 82.4%881.0
HYSU_c30560_g1_i1_len_1973
Hyptis suaveolensFlavonoid · 4CLblast+hmm High 81.9%880.7
Sbow01G0052220.1
Salvia bowleyanaFlavonoid · 4CLblast+hmm High 78.8%880.3
Stenogyne_calaminthoides__EVM_prediction_HiC_scaffold_46.170.mRNA1
Stenogyne calaminthoidesFlavonoid · 4CLblast+hmm High 80.6%880.3
Pat_B06G119600.m1
Pogostemon cablinFlavonoid · 4CLblast+hmm High 81.6%880.2