LamiOmicsDB Lamiaceae Multi-Omics Database
v1 808 species · 3 phylogenies · 6,313 sequences

Pathway-family scientific record

4CL

4-coumarate--CoA ligase family

This module includes PlantSME enzyme-family assignments and traceable candidate protein identifiers from genome-derived or transcriptome-derived protein sets.

Browse candidatesCompare speciesCSV
Stable locus plantsmeFlavonoid biosynthesis
Public candidate IDs
3,999
Species with candidates
80
Species with assignments
80
Source assignments
7,323
Gene-tree candidates
0
Motif candidates
0

Evidence profile

Available evidence layers

◆Candidate identifiers3,999 public species-linked identifiers can be inspected.
GTGene-tree workflow0 comparable source candidates; 0 high-confidence source calls.
MMotif-screen proxy0 motif-screen candidates; 0 with all required motif proxies.
100 kbLocal clustering proxy0 clusters across 0 species; maximum cluster size 0.

Comparative signature

Lamiaceae comparison fields

Rate delta
Not calculated
Prevalence delta
Not calculated
Comparable source
PlantSME family assignments
Comparable source count
7,323
Public candidate count
3,999
Evidence mode
plantsme

Species coverage

Assignment and locus coverage by species

Source family counts and public candidate identifiers are shown in separate columns.

SpeciesEvidence stateSource countCandidate IDsExpression
Teucrium chamaedrysAjugoideae · Teucrium Stable locus 33250 No matrix
Pogostemon cablinLamioideae · Pogostemon Stable locus 29950 Available
Nepeta catariaNepetoideae · Nepeta Stable locus 19850 Available
Teucrium marumAjugoideae · Teucrium Stable locus 18650 No matrix
Ocimum basilicumNepetoideae · Ocimum Stable locus 18550 Available
Salvia splendensNepetoideae · Salvia Stable locus 15750 No matrix
Elsholtzia splendensNepetoideae · Elsholtzia Stable locus 14350 No matrix
Stenogyne calaminthoidesLamioideae · Stenogyne Stable locus 14350 No matrix
Callicarpa americanaCallicarpoideae · Callicarpa Stable locus 13150 No matrix
Cornutia pyramidataPremnoideae · Cornutia Stable locus 12350 No matrix
Phlomoides rotataLamioideae · Phlomoides Stable locus 11950 No matrix
Salvia rosmarinusNepetoideae · Salvia Stable locus 11750 Available
Hyssopus officinalisNepetoideae · Hyssopus Stable locus 11150 No matrix
Clinopodium barosmumNepetoideae · Clinopodium Stable locus 10850 No matrix
Perilla frutescensNepetoideae · Perilla Stable locus 10750 No matrix
Nepeta mussiniiNepetoideae · Nepeta Stable locus 9950 Available
Origanum vulgareNepetoideae · Origanum Stable locus 9850 No matrix
Ocimum tenuiflorumNepetoideae · Ocimum Stable locus 9750 No matrix
Phlomis fruticosaLamioideae · Phlomis Stable locus 9650 No matrix
Salvia hispanicaNepetoideae · Salvia Stable locus 9650 No matrix
Rotheca myricoidesAjugoideae · Rotheca Stable locus 9550 No matrix
Origanum majoranaNepetoideae · Origanum Stable locus 9450 No matrix
Hyptis suaveolensNepetoideae · Hyptis Stable locus 9350 No matrix
Collinsonia canadensisNepetoideae · Collinsonia Stable locus 9250 No matrix
Salvia divinorumNepetoideae · Salvia Stable locus 9250 No matrix
Prunella vulgarisNepetoideae · Prunella Stable locus 9150 No matrix
Thymus vulgarisNepetoideae · Thymus Stable locus 9150 No matrix
Ballota pseudodictamnusLamioideae · Ballota Stable locus 9050 No matrix
Mentha x piperitaNepetoideae · Mentha Stable locus 8750 No matrix
Salvia bowleyanaNepetoideae · Salvia Stable locus 8650 No matrix
Dracocephalum rupestreNepetoideae · Dracocephalum Stable locus 8550 No matrix
Lavandula angustifoliaNepetoideae · Lavandula Stable locus 8450 No matrix
Monarda didymaNepetoideae · Monarda Stable locus 8150 No matrix
Plectranthus barbatusNepetoideae · Plectranthus Stable locus 8150 No matrix
Tectona grandisTectonoideae · Tectona Stable locus 8150 Available
Glechoma longitubaNepetoideae · Glechoma Stable locus 8050 No matrix
Lycopus americanusNepetoideae · Lycopus Stable locus 8050 No matrix
Mentha spicataNepetoideae · Mentha Stable locus 8050 No matrix
Westringia fruticosaProstantheroideae · Westringia Stable locus 8050 No matrix
Holmskioldia sanguineaScutellarioideae · Holmskioldia Stable locus 7950 No matrix
Ajuga decumbensAjugoideae · Ajuga Stable locus 7850 No matrix
Petraeovitex bambusetoriumPeronematoideae · Petraeovitex Stable locus 7750 No matrix
Clinopodium gracileNepetoideae · Clinopodium Stable locus 7650 No matrix
Glechoma hederaceaNepetoideae · Glechoma Stable locus 7650 No matrix
Mosla soochowensisNepetoideae · Mosla Stable locus 7650 No matrix
Stachys officinalisLamioideae · Stachys Stable locus 7550 No matrix
Thymus quinquecostatusNepetoideae · Thymus Stable locus 7550 No matrix
Melissa officinalisNepetoideae · Melissa Stable locus 7450 No matrix
Perovskia atriplicifoliaNepetoideae · Perovskia Stable locus 7450 No matrix
Prostanthera lasianthosProstantheroideae · Prostanthera Stable locus 7450 No matrix
Mosla chinensisNepetoideae · Mosla Stable locus 7350 No matrix
Premna microphyllaPremnoideae · Premna Stable locus 7350 No matrix
Congea tomentosaSymphorematoideae · Congea Stable locus 7150 No matrix
Gmelina philippensisPremnoideae · Gmelina Stable locus 7150 No matrix
Marrubium vulgareLamioideae · Marrubium Stable locus 7150 No matrix
Lamium albumLamioideae · Lamium Stable locus 7050 No matrix
Callicarpa nudifloraCallicarpoideae · Callicarpa Stable locus 6950 No matrix
Isodon lophanthoidesNepetoideae · Isodon Stable locus 6850 No matrix
Agastache foeniculumNepetoideae · Agastache Stable locus 6750 No matrix
Scutellaria baicalensisScutellarioideae · Scutellaria Stable locus 6750 No matrix
Salvia miltiorrhizaNepetoideae · Salvia Stable locus 6650 Available
Drepanocaryum sewerzowiiNepetoideae · Drepanocaryum Stable locus 6550 No matrix
Isodon serraNepetoideae · Isodon Stable locus 6550 No matrix
Salvia officinalisNepetoideae · Salvia Stable locus 6550 No matrix
Scutellaria barbataScutellarioideae · Scutellaria Stable locus 6550 No matrix
Ajuga reptansAjugoideae · Ajuga Stable locus 6450 No matrix
Leonurus cardiacaLamioideae · Leonurus Stable locus 6450 No matrix
Vitex agnus-castusViticoideae · Vitex Stable locus 6450 No matrix
Mentha longifoliaNepetoideae · Mentha Stable locus 6350 Available
Agastache rugosaNepetoideae · Agastache Stable locus 6250 No matrix
Leonotis leonurusLamioideae · Leonotis Stable locus 6250 No matrix
Clerodendrum bungeiAjugoideae · Clerodendrum Stable locus 6050 No matrix
Marmoritis complanataNepetoideae · Marmoritis Stable locus 5850 No matrix
Teucrium canadenseAjugoideae · Teucrium Stable locus 5850 No matrix
Leonurus japonicusLamioideae · Leonurus Stable locus 5750 No matrix
Perilla citriodoraNepetoideae · Perilla Stable locus 5750 No matrix
Perilla frutescens var. hirtellaNepetoideae · Perilla Stable locus 5750 No matrix
Leonurus sibiricusLamioideae · Leonurus Stable locus 5050 No matrix
Salvia sclareaNepetoideae · Salvia Stable locus 5050 No matrix
Schizonepeta tenuifoliaNepetoideae · Schizonepeta Stable locus 4949 No matrix

Candidate records

Traceable candidate identifiers

Filter and inspect candidate identifiers for this family.

Clear
Candidate IDSpeciesPathway / familyEvidenceConfidenceIdentityHMM score
evm.model.Chr08.774
Callicarpa nudifloraFlavonoid · 4CLblast+hmm High 84.9%901.6
HOSA_c45635_g1_i1_len_1921
Holmskioldia sanguineaFlavonoid · 4CLblast+hmm High 84.8%900.9
tectona_grandis_Tg16g09770.t1
Tectona grandisFlavonoid · 4CLblast+hmm High 83.1%898.6
VIAG_c37070_g2_i1_len_1949
Vitex agnus-castusFlavonoid · 4CLblast+hmm High 81.7%898.1
CAame12G0009820.v1.94
Callicarpa americanaFlavonoid · 4CLblast+hmm High 84.7%897.7
CLBU_c53006_g2_i4_len_2538
Clerodendrum bungeiFlavonoid · 4CLblast+hmm High 82.9%897.7
origanum_vulgare_101200.g1.t1
Origanum vulgareFlavonoid · 4CLblast+hmm High 81.3%896.5
VIAG_c37070_g1_i1_len_1996
Vitex agnus-castusFlavonoid · 4CLblast+hmm High 84.4%895.7
CAame16G0018110.v1.94
Callicarpa americanaFlavonoid · 4CLblast+hmm High 83.8%895.5
Mc3g32510.1
Mosla chinensisFlavonoid · 4CLblast+hmm High 82.0%894.5
ORMA_c47541_g2_i1_len_1935
Origanum majoranaFlavonoid · 4CLblast+hmm High 81.1%894.2
WEFR_c46744_g1_i1_len_1753
Westringia fruticosaFlavonoid · 4CLblast+hmm High 82.8%894.0
Ms_c004g00177.1
Mosla soochowensisFlavonoid · 4CLblast+hmm High 81.7%893.1
GMPH_c205_g1_i1_len_1970
Gmelina philippensisFlavonoid · 4CLblast+hmm High 85.4%892.9
Ms_c006g02310.1
Mosla soochowensisFlavonoid · 4CLblast+hmm High 82.6%892.7
rna-gnl|WGS:QFCC|chr09_24705554_24709442.mrna1
Perilla frutescensFlavonoid · 4CLblast+hmm High 83.0%892.7
Es7A.G110800.t2
Elsholtzia splendensFlavonoid · 4CLblast+hmm High 82.4%892.4
evm.model.Chr15.342
Callicarpa nudifloraFlavonoid · 4CLblast+hmm High 83.4%892.2
Es7A.G110800.t1
Elsholtzia splendensFlavonoid · 4CLblast+hmm High 82.4%892.0
CLBU_c38203_g1_i1_len_1979
Clerodendrum bungeiFlavonoid · 4CLblast+hmm High 84.7%891.9
Lj4g02860.1
Leonurus japonicusFlavonoid · 4CLblast+hmm High 83.0%891.7
Mc5g13400.1
Mosla chinensisFlavonoid · 4CLblast+hmm High 83.0%891.7
375652.g2.t1
Ocimum basilicumFlavonoid · 4CLblast+hmm High 82.4%891.6
THVU_c76132_g3_i2_len_1932
Thymus vulgarisFlavonoid · 4CLblast+hmm High 81.3%891.4
rna-gnl|WGS:QFCC|chr05_19273267_19277761.mrna1
Perilla frutescensFlavonoid · 4CLblast+hmm High 81.0%891.3
rna-gnl|WGS:QIYW|chr02_49947024_49951504.mrna1
Perilla citriodoraFlavonoid · 4CLblast+hmm High 81.0%891.3
rna-gnl|WGS:QIYW|chr02_49947024_49951504.mrna1
Perilla frutescens var. hirtellaFlavonoid · 4CLblast+hmm High 81.0%891.3
PEBA_c37909_g1_i1_len_2046
Petraeovitex bambusetoriumFlavonoid · 4CLblast+hmm High 83.7%891.1
PHFR_c71154_g1_i1_len_2126
Phlomis fruticosaFlavonoid · 4CLblast+hmm High 82.1%891.0
Pat_B07G164800.m1
Pogostemon cablinFlavonoid · 4CLblast+hmm High 81.5%890.9
18:ILLG2G66.41m1
Isodon lophanthoidesFlavonoid · 4CLblast+hmm High 82.2%890.5
BAPS_c39261_g1_i2_len_1953
Ballota pseudodictamnusFlavonoid · 4CLblast+hmm High 82.2%890.5
LELE_c31321_g2_i1_len_1850
Leonotis leonurusFlavonoid · 4CLblast+hmm High 83.1%890.5
382794.g40.t1
Ocimum basilicumFlavonoid · 4CLblast+hmm High 81.9%890.4
Es7B.G111500.t2
Elsholtzia splendensFlavonoid · 4CLblast+hmm High 82.2%890.4
AGFO_c20267_g2_i1_len_1931
Agastache foeniculumFlavonoid · 4CLblast+hmm High 81.5%890.1
rna-gnl|WGS:QFCC|chr03_40003797_40009862.mrna1
Perilla frutescensFlavonoid · 4CLblast+hmm High 82.6%890.1
rna-gnl|WGS:QIYW|chr01_33570494_33576608.mrna1
Perilla citriodoraFlavonoid · 4CLblast+hmm High 82.6%890.1
rna-gnl|WGS:QIYW|chr01_33570494_33576608.mrna1
Perilla frutescens var. hirtellaFlavonoid · 4CLblast+hmm High 82.6%890.1
Es7B.G111500.t1
Elsholtzia splendensFlavonoid · 4CLblast+hmm High 82.2%890.0
tectona_grandis_Tg10g09800.t1
Tectona grandisFlavonoid · 4CLblast+hmm High 83.6%889.9
549.g135.t1
Ocimum basilicumFlavonoid · 4CLblast+hmm High 81.8%889.8
rna-gnl|WGS:QFCC|chr01_74397645_74402146.mrna1
Perilla frutescensFlavonoid · 4CLblast+hmm High 80.8%889.7
PRLA_c70204_g1_i1_len_1924
Prostanthera lasianthosFlavonoid · 4CLblast+hmm High 83.2%889.6
Es7A.G266700.t1
Elsholtzia splendensFlavonoid · 4CLblast+hmm High 82.3%889.0
Es7B.G266500.t1
Elsholtzia splendensFlavonoid · 4CLblast+hmm High 82.3%889.0
Pat_A07G179000.m1
Pogostemon cablinFlavonoid · 4CLblast+hmm High 81.0%888.6
STOF_c61679_g1_i1_len_1930
Stachys officinalisFlavonoid · 4CLblast+hmm High 80.4%888.6
Ls6g04040.1
Leonurus sibiricusFlavonoid · 4CLblast+hmm High 82.6%888.4
KAL8502158.1
Phlomoides rotataFlavonoid · 4CLblast+hmm High 82.0%888.2