LamiOmicsDB Lamiaceae Multi-Omics Database
v1 808 species · 3 phylogenies · 6,313 sequences

Pathway-family scientific record

4CL

4-coumarate--CoA ligase family

This module includes PlantSME enzyme-family assignments and traceable candidate protein identifiers from genome-derived or transcriptome-derived protein sets.

Browse candidatesCompare speciesCSV
Stable locus plantsmeFlavonoid biosynthesis
Public candidate IDs
3,999
Species with candidates
80
Species with assignments
80
Source assignments
7,323
Gene-tree candidates
0
Motif candidates
0

Evidence profile

Available evidence layers

◆Candidate identifiers3,999 public species-linked identifiers can be inspected.
GTGene-tree workflow0 comparable source candidates; 0 high-confidence source calls.
MMotif-screen proxy0 motif-screen candidates; 0 with all required motif proxies.
100 kbLocal clustering proxy0 clusters across 0 species; maximum cluster size 0.

Comparative signature

Lamiaceae comparison fields

Rate delta
Not calculated
Prevalence delta
Not calculated
Comparable source
PlantSME family assignments
Comparable source count
7,323
Public candidate count
3,999
Evidence mode
plantsme

Species coverage

Assignment and locus coverage by species

Source family counts and public candidate identifiers are shown in separate columns.

SpeciesEvidence stateSource countCandidate IDsExpression
Teucrium chamaedrysAjugoideae · Teucrium Stable locus 33250 No matrix
Pogostemon cablinLamioideae · Pogostemon Stable locus 29950 Available
Nepeta catariaNepetoideae · Nepeta Stable locus 19850 Available
Teucrium marumAjugoideae · Teucrium Stable locus 18650 No matrix
Ocimum basilicumNepetoideae · Ocimum Stable locus 18550 Available
Salvia splendensNepetoideae · Salvia Stable locus 15750 No matrix
Elsholtzia splendensNepetoideae · Elsholtzia Stable locus 14350 No matrix
Stenogyne calaminthoidesLamioideae · Stenogyne Stable locus 14350 No matrix
Callicarpa americanaCallicarpoideae · Callicarpa Stable locus 13150 No matrix
Cornutia pyramidataPremnoideae · Cornutia Stable locus 12350 No matrix
Phlomoides rotataLamioideae · Phlomoides Stable locus 11950 No matrix
Salvia rosmarinusNepetoideae · Salvia Stable locus 11750 Available
Hyssopus officinalisNepetoideae · Hyssopus Stable locus 11150 No matrix
Clinopodium barosmumNepetoideae · Clinopodium Stable locus 10850 No matrix
Perilla frutescensNepetoideae · Perilla Stable locus 10750 No matrix
Nepeta mussiniiNepetoideae · Nepeta Stable locus 9950 Available
Origanum vulgareNepetoideae · Origanum Stable locus 9850 No matrix
Ocimum tenuiflorumNepetoideae · Ocimum Stable locus 9750 No matrix
Phlomis fruticosaLamioideae · Phlomis Stable locus 9650 No matrix
Salvia hispanicaNepetoideae · Salvia Stable locus 9650 No matrix
Rotheca myricoidesAjugoideae · Rotheca Stable locus 9550 No matrix
Origanum majoranaNepetoideae · Origanum Stable locus 9450 No matrix
Hyptis suaveolensNepetoideae · Hyptis Stable locus 9350 No matrix
Collinsonia canadensisNepetoideae · Collinsonia Stable locus 9250 No matrix
Salvia divinorumNepetoideae · Salvia Stable locus 9250 No matrix
Prunella vulgarisNepetoideae · Prunella Stable locus 9150 No matrix
Thymus vulgarisNepetoideae · Thymus Stable locus 9150 No matrix
Ballota pseudodictamnusLamioideae · Ballota Stable locus 9050 No matrix
Mentha x piperitaNepetoideae · Mentha Stable locus 8750 No matrix
Salvia bowleyanaNepetoideae · Salvia Stable locus 8650 No matrix
Dracocephalum rupestreNepetoideae · Dracocephalum Stable locus 8550 No matrix
Lavandula angustifoliaNepetoideae · Lavandula Stable locus 8450 No matrix
Monarda didymaNepetoideae · Monarda Stable locus 8150 No matrix
Plectranthus barbatusNepetoideae · Plectranthus Stable locus 8150 No matrix
Tectona grandisTectonoideae · Tectona Stable locus 8150 Available
Glechoma longitubaNepetoideae · Glechoma Stable locus 8050 No matrix
Lycopus americanusNepetoideae · Lycopus Stable locus 8050 No matrix
Mentha spicataNepetoideae · Mentha Stable locus 8050 No matrix
Westringia fruticosaProstantheroideae · Westringia Stable locus 8050 No matrix
Holmskioldia sanguineaScutellarioideae · Holmskioldia Stable locus 7950 No matrix
Ajuga decumbensAjugoideae · Ajuga Stable locus 7850 No matrix
Petraeovitex bambusetoriumPeronematoideae · Petraeovitex Stable locus 7750 No matrix
Clinopodium gracileNepetoideae · Clinopodium Stable locus 7650 No matrix
Glechoma hederaceaNepetoideae · Glechoma Stable locus 7650 No matrix
Mosla soochowensisNepetoideae · Mosla Stable locus 7650 No matrix
Stachys officinalisLamioideae · Stachys Stable locus 7550 No matrix
Thymus quinquecostatusNepetoideae · Thymus Stable locus 7550 No matrix
Melissa officinalisNepetoideae · Melissa Stable locus 7450 No matrix
Perovskia atriplicifoliaNepetoideae · Perovskia Stable locus 7450 No matrix
Prostanthera lasianthosProstantheroideae · Prostanthera Stable locus 7450 No matrix
Mosla chinensisNepetoideae · Mosla Stable locus 7350 No matrix
Premna microphyllaPremnoideae · Premna Stable locus 7350 No matrix
Congea tomentosaSymphorematoideae · Congea Stable locus 7150 No matrix
Gmelina philippensisPremnoideae · Gmelina Stable locus 7150 No matrix
Marrubium vulgareLamioideae · Marrubium Stable locus 7150 No matrix
Lamium albumLamioideae · Lamium Stable locus 7050 No matrix
Callicarpa nudifloraCallicarpoideae · Callicarpa Stable locus 6950 No matrix
Isodon lophanthoidesNepetoideae · Isodon Stable locus 6850 No matrix
Agastache foeniculumNepetoideae · Agastache Stable locus 6750 No matrix
Scutellaria baicalensisScutellarioideae · Scutellaria Stable locus 6750 No matrix
Salvia miltiorrhizaNepetoideae · Salvia Stable locus 6650 Available
Drepanocaryum sewerzowiiNepetoideae · Drepanocaryum Stable locus 6550 No matrix
Isodon serraNepetoideae · Isodon Stable locus 6550 No matrix
Salvia officinalisNepetoideae · Salvia Stable locus 6550 No matrix
Scutellaria barbataScutellarioideae · Scutellaria Stable locus 6550 No matrix
Ajuga reptansAjugoideae · Ajuga Stable locus 6450 No matrix
Leonurus cardiacaLamioideae · Leonurus Stable locus 6450 No matrix
Vitex agnus-castusViticoideae · Vitex Stable locus 6450 No matrix
Mentha longifoliaNepetoideae · Mentha Stable locus 6350 Available
Agastache rugosaNepetoideae · Agastache Stable locus 6250 No matrix
Leonotis leonurusLamioideae · Leonotis Stable locus 6250 No matrix
Clerodendrum bungeiAjugoideae · Clerodendrum Stable locus 6050 No matrix
Marmoritis complanataNepetoideae · Marmoritis Stable locus 5850 No matrix
Teucrium canadenseAjugoideae · Teucrium Stable locus 5850 No matrix
Leonurus japonicusLamioideae · Leonurus Stable locus 5750 No matrix
Perilla citriodoraNepetoideae · Perilla Stable locus 5750 No matrix
Perilla frutescens var. hirtellaNepetoideae · Perilla Stable locus 5750 No matrix
Leonurus sibiricusLamioideae · Leonurus Stable locus 5050 No matrix
Salvia sclareaNepetoideae · Salvia Stable locus 5050 No matrix
Schizonepeta tenuifoliaNepetoideae · Schizonepeta Stable locus 4949 No matrix

Candidate records

Traceable candidate identifiers

Filter and inspect candidate identifiers for this family.

Clear
Candidate IDSpeciesPathway / familyEvidenceConfidenceIdentityHMM score
733.g77.t1
Ocimum basilicumFlavonoid · 4CLblast+hmm High 63.8%789.2
rna-gnl|WGS:QFCC|chr01_56504051_56512069.mrna1
Perilla frutescensFlavonoid · 4CLblast+hmm High 66.6%789.1
AJRE_c44125_g1_i7_len_2073
Ajuga reptansFlavonoid · 4CLblast+hmm High 66.0%787.9
g27097.t1
Ajuga decumbensFlavonoid · 4CLblast+hmm High 66.7%787.2
COTO_c30092_g1_i1_len_1930
Congea tomentosaFlavonoid · 4CLblast+hmm High 66.5%786.9
g27107.t1
Ajuga decumbensFlavonoid · 4CLblast+hmm High 66.5%785.9
Smil00G0035230.1.v1.484
Salvia miltiorrhizaFlavonoid · 4CLblast+hmm High 66.4%785.7
COCA_c67574_g1_i1_len_1863
Collinsonia canadensisFlavonoid · 4CLblast+hmm High 65.9%785.5
19:ILLG3G80.29m1
Isodon lophanthoidesFlavonoid · 4CLblast+hmm High 65.0%785.2
Ms_c006g01254.1
Mosla soochowensisFlavonoid · 4CLblast+hmm High 66.2%785.2
Sbow02G0017440.1
Salvia bowleyanaFlavonoid · 4CLblast+hmm High 65.7%785.2
Sbow02G0017380.1
Salvia bowleyanaFlavonoid · 4CLblast+hmm High 65.7%784.0
KAL8456870.1
Phlomoides rotataFlavonoid · 4CLblast+hmm High 80.0%783.6
ORMA_c38638_g2_i1_len_1770
Origanum majoranaFlavonoid · 4CLblast+hmm High 63.5%783.3
GWHPBJVA021367
Thymus quinquecostatusFlavonoid · 4CLblast+hmm High 63.2%782.9
Es3A.G201300.t1
Elsholtzia splendensFlavonoid · 4CLblast+hmm High 65.7%780.5
COPY_c72715_g1_i2_len_1916
Cornutia pyramidataFlavonoid · 4CLblast+hmm High 66.0%780.3
evm.model.LG04.1875
Clinopodium barosmumFlavonoid · 4CLblast+hmm High 63.3%780.1
Es3B.G199700.t1
Elsholtzia splendensFlavonoid · 4CLblast+hmm High 65.5%778.9
THVU_c66744_g1_i1_len_1647
Thymus vulgarisFlavonoid · 4CLblast+hmm High 63.1%778.8
g33827.t1
Hyssopus officinalisFlavonoid · 4CLblast+hmm High 64.8%778.5
Mc5g24580.1
Mosla chinensisFlavonoid · 4CLblast+hmm High 65.5%777.9
Ls7g12290.1
Leonurus sibiricusFlavonoid · 4CLblast+hmm High 64.4%777.5
TECA_c29571_g1_i1_len_1900
Teucrium canadenseFlavonoid · 4CLblast+hmm High 66.0%777.3
KAL1548885.1
Salvia divinorumFlavonoid · 4CLblast+hmm High 64.6%775.9
KAL8488855.1
Phlomoides rotataFlavonoid · 4CLblast+hmm High 64.1%775.7
Dru_7G0006670.1
Dracocephalum rupestreFlavonoid · 4CLblast+hmm High 63.7%775.0
LYAM_c24041_g1_i1_len_1667
Lycopus americanusFlavonoid · 4CLblast+hmm High 64.8%775.0
Teucrium_chamaedrys__Tcha125619
Teucrium chamaedrysFlavonoid · 4CLblast+hmm High 65.4%774.7
LECA_c33501_g3_i2_len_2067
Leonurus cardiacaFlavonoid · 4CLblast+hmm High 63.8%773.9
Stenogyne_calaminthoides__EVM_prediction_HiC_scaffold_29.533.mRNA1
Stenogyne calaminthoidesFlavonoid · 4CLblast+hmm High 63.1%771.4
DRSE_g13590.t1
Drepanocaryum sewerzowiiFlavonoid · 4CLblast+hmm High 63.4%770.9
STOF_c61679_g2_i1_len_1858
Stachys officinalisFlavonoid · 4CLblast+hmm High 64.1%770.8
evm.model.chr6.1011
Prunella vulgarisFlavonoid · 4CLblast+hmm High 64.0%768.6
MAVU_c23243_g1_i1_len_1821
Marrubium vulgareFlavonoid · 4CLblast+hmm High 62.2%768.1
XP_047946454.1
Salvia hispanicaFlavonoid · 4CLblast+hmm High 64.2%767.0
AG34_scaffold3_10530T
Agastache rugosaFlavonoid · 4CLblast+hmm High 63.8%766.0
LAAL_c16725_g1_i2_len_1774
Lamium albumFlavonoid · 4CLblast+hmm High 62.4%765.5
PHFR_c69592_g3_i2_len_1839
Phlomis fruticosaFlavonoid · 4CLblast+hmm High 63.1%765.2
Clgra_023058-T1
Clinopodium gracileFlavonoid · 4CLblast+hmm High 63.2%764.5
Roff10670081930
Salvia rosmarinusFlavonoid · 4CLblast+hmm High 66.5%763.9
GLHE_c62755_g1_i1_len_1868
Glechoma hederaceaFlavonoid · 4CLblast+hmm High 63.9%763.6
GlLon_015101-T1
Glechoma longitubaFlavonoid · 4CLblast+hmm High 64.4%763.6
XP_042044708.1
Salvia splendensFlavonoid · 4CLblast+hmm High 64.0%763.1
evm.model.chr2.1285
Prunella vulgarisFlavonoid · 4CLblast+hmm High 62.7%762.8
g5459.t1
Nepeta mussiniiFlavonoid · 4CLblast+hmm High 61.7%761.8
PLBA_c16572_g1_i2_len_1804
Plectranthus barbatusFlavonoid · 4CLblast+hmm High 62.3%761.3
CAame16G0018120.v1.94
Callicarpa americanaFlavonoid · 4CLblast+hmm High 83.7%759.8
Mlonscaffold_3_length_454607550082450.1.v1.326
Mentha longifoliaFlavonoid · 4CLblast+hmm High 62.3%758.8
Mlonscaffold_3_length_454607550082490.1.v1.326
Mentha longifoliaFlavonoid · 4CLblast+hmm High 62.3%758.8