LamiOmicsDB Lamiaceae Multi-Omics Database
v1 808 species · 3 phylogenies · 6,313 sequences

Pathway-family scientific record

CHS

Chalcone synthase family

This module includes PlantSME enzyme-family assignments and traceable candidate protein identifiers from genome-derived or transcriptome-derived protein sets.

Browse candidatesCompare speciesCSV
Stable locus plantsmeFlavonoid biosynthesis
Public candidate IDs
1,120
Species with candidates
80
Species with assignments
80
Source assignments
1,166
Gene-tree candidates
0
Motif candidates
0

Evidence profile

Available evidence layers

◆Candidate identifiers1,120 public species-linked identifiers can be inspected.
GTGene-tree workflow0 comparable source candidates; 0 high-confidence source calls.
MMotif-screen proxy0 motif-screen candidates; 0 with all required motif proxies.
100 kbLocal clustering proxy0 clusters across 0 species; maximum cluster size 0.

Comparative signature

Lamiaceae comparison fields

Rate delta
Not calculated
Prevalence delta
Not calculated
Comparable source
PlantSME family assignments
Comparable source count
1,166
Public candidate count
1,120
Evidence mode
plantsme

Species coverage

Assignment and locus coverage by species

Source family counts and public candidate identifiers are shown in separate columns.

SpeciesEvidence stateSource countCandidate IDsExpression
Pogostemon cablinLamioideae · Pogostemon Stable locus 9650 Available
Ocimum basilicumNepetoideae · Ocimum Stable locus 5050 Available
Teucrium chamaedrysAjugoideae · Teucrium Stable locus 3535 No matrix
Stenogyne calaminthoidesLamioideae · Stenogyne Stable locus 3434 No matrix
Glechoma hederaceaNepetoideae · Glechoma Stable locus 2323 No matrix
Ocimum tenuiflorumNepetoideae · Ocimum Stable locus 2323 No matrix
Nepeta catariaNepetoideae · Nepeta Stable locus 2121 Available
Teucrium marumAjugoideae · Teucrium Stable locus 2121 No matrix
Elsholtzia splendensNepetoideae · Elsholtzia Stable locus 2020 No matrix
Hyptis suaveolensNepetoideae · Hyptis Stable locus 2020 No matrix
Origanum majoranaNepetoideae · Origanum Stable locus 1919 No matrix
Plectranthus barbatusNepetoideae · Plectranthus Stable locus 1919 No matrix
Glechoma longitubaNepetoideae · Glechoma Stable locus 1818 No matrix
Perilla frutescensNepetoideae · Perilla Stable locus 1818 No matrix
Phlomoides rotataLamioideae · Phlomoides Stable locus 1818 No matrix
Callicarpa americanaCallicarpoideae · Callicarpa Stable locus 1717 No matrix
Collinsonia canadensisNepetoideae · Collinsonia Stable locus 1717 No matrix
Origanum vulgareNepetoideae · Origanum Stable locus 1717 No matrix
Salvia rosmarinusNepetoideae · Salvia Stable locus 1717 Available
Salvia splendensNepetoideae · Salvia Stable locus 1717 No matrix
Clinopodium barosmumNepetoideae · Clinopodium Stable locus 1616 No matrix
Perovskia atriplicifoliaNepetoideae · Perovskia Stable locus 1616 No matrix
Rotheca myricoidesAjugoideae · Rotheca Stable locus 1616 No matrix
Gmelina philippensisPremnoideae · Gmelina Stable locus 1515 No matrix
Leonurus cardiacaLamioideae · Leonurus Stable locus 1515 No matrix
Lycopus americanusNepetoideae · Lycopus Stable locus 1515 No matrix
Melissa officinalisNepetoideae · Melissa Stable locus 1515 No matrix
Mentha x piperitaNepetoideae · Mentha Stable locus 1515 No matrix
Salvia officinalisNepetoideae · Salvia Stable locus 1515 No matrix
Cornutia pyramidataPremnoideae · Cornutia Stable locus 1414 No matrix
Perilla citriodoraNepetoideae · Perilla Stable locus 1414 No matrix
Perilla frutescens var. hirtellaNepetoideae · Perilla Stable locus 1414 No matrix
Stachys officinalisLamioideae · Stachys Stable locus 1414 No matrix
Isodon serraNepetoideae · Isodon Stable locus 1313 No matrix
Lavandula angustifoliaNepetoideae · Lavandula Stable locus 1313 No matrix
Premna microphyllaPremnoideae · Premna Stable locus 1313 No matrix
Thymus vulgarisNepetoideae · Thymus Stable locus 1313 No matrix
Ballota pseudodictamnusLamioideae · Ballota Stable locus 1212 No matrix
Isodon lophanthoidesNepetoideae · Isodon Stable locus 1212 No matrix
Leonotis leonurusLamioideae · Leonotis Stable locus 1212 No matrix
Mentha spicataNepetoideae · Mentha Stable locus 1212 No matrix
Salvia bowleyanaNepetoideae · Salvia Stable locus 1212 No matrix
Salvia hispanicaNepetoideae · Salvia Stable locus 1212 No matrix
Tectona grandisTectonoideae · Tectona Stable locus 1212 Available
Ajuga reptansAjugoideae · Ajuga Stable locus 1111 No matrix
Clinopodium gracileNepetoideae · Clinopodium Stable locus 1111 No matrix
Hyssopus officinalisNepetoideae · Hyssopus Stable locus 1111 No matrix
Monarda didymaNepetoideae · Monarda Stable locus 1111 No matrix
Mosla soochowensisNepetoideae · Mosla Stable locus 1111 No matrix
Nepeta mussiniiNepetoideae · Nepeta Stable locus 1111 Available
Phlomis fruticosaLamioideae · Phlomis Stable locus 1111 No matrix
Salvia miltiorrhizaNepetoideae · Salvia Stable locus 1111 Available
Agastache foeniculumNepetoideae · Agastache Stable locus 1010 No matrix
Marrubium vulgareLamioideae · Marrubium Stable locus 1010 No matrix
Mentha longifoliaNepetoideae · Mentha Stable locus 1010 Available
Mosla chinensisNepetoideae · Mosla Stable locus 1010 No matrix
Prunella vulgarisNepetoideae · Prunella Stable locus 1010 No matrix
Salvia divinorumNepetoideae · Salvia Stable locus 1010 No matrix
Scutellaria baicalensisScutellarioideae · Scutellaria Stable locus 1010 No matrix
Vitex agnus-castusViticoideae · Vitex Stable locus 1010 No matrix
Agastache rugosaNepetoideae · Agastache Stable locus 99 No matrix
Callicarpa nudifloraCallicarpoideae · Callicarpa Stable locus 99 No matrix
Drepanocaryum sewerzowiiNepetoideae · Drepanocaryum Stable locus 99 No matrix
Holmskioldia sanguineaScutellarioideae · Holmskioldia Stable locus 99 No matrix
Marmoritis complanataNepetoideae · Marmoritis Stable locus 99 No matrix
Schizonepeta tenuifoliaNepetoideae · Schizonepeta Stable locus 99 No matrix
Teucrium canadenseAjugoideae · Teucrium Stable locus 99 No matrix
Thymus quinquecostatusNepetoideae · Thymus Stable locus 99 No matrix
Clerodendrum bungeiAjugoideae · Clerodendrum Stable locus 88 No matrix
Prostanthera lasianthosProstantheroideae · Prostanthera Stable locus 88 No matrix
Petraeovitex bambusetoriumPeronematoideae · Petraeovitex Stable locus 77 No matrix
Westringia fruticosaProstantheroideae · Westringia Stable locus 77 No matrix
Ajuga decumbensAjugoideae · Ajuga Stable locus 66 No matrix
Dracocephalum rupestreNepetoideae · Dracocephalum Stable locus 66 No matrix
Lamium albumLamioideae · Lamium Stable locus 66 No matrix
Leonurus japonicusLamioideae · Leonurus Stable locus 66 No matrix
Salvia sclareaNepetoideae · Salvia Stable locus 66 No matrix
Scutellaria barbataScutellarioideae · Scutellaria Stable locus 66 No matrix
Congea tomentosaSymphorematoideae · Congea Stable locus 55 No matrix
Leonurus sibiricusLamioideae · Leonurus Stable locus 55 No matrix

Candidate records

Traceable candidate identifiers

Filter and inspect candidate identifiers for this family.

Clear
Candidate IDSpeciesPathway / familyEvidenceConfidenceIdentityHMM score
CAame02G0004520.v1.94
Callicarpa americanaFlavonoid · CHSblast+hmm High 91.5%823.8
PEAT_c30985_g2_i1_len_1560
Perovskia atriplicifoliaFlavonoid · CHSblast+hmm High 91.5%820.0
LYAM_c32269_g1_i1_len_1504
Lycopus americanusFlavonoid · CHSblast+hmm High 90.5%819.9
Pat_B29G024500.m1
Pogostemon cablinFlavonoid · CHSblast+hmm High 90.5%819.9
g6967.t1
Salvia sclareaFlavonoid · CHSblast+hmm High 91.5%819.9
evm.model.Chr07.1066
Callicarpa nudifloraFlavonoid · CHSblast+hmm High 91.7%819.8
MODI_c42336_g1_i2_len_1686
Monarda didymaFlavonoid · CHSblast+hmm High 89.9%818.1
SAOF_c4652_g1_i1_len_1485
Salvia officinalisFlavonoid · CHSblast+hmm High 90.2%818.1
g19292.t1
Ajuga decumbensFlavonoid · CHSblast+hmm High 90.7%817.8
ORMA_c23330_g1_i1_len_1656
Origanum majoranaFlavonoid · CHSblast+hmm High 90.7%817.5
origanum_vulgare_1065.g10.t1
Origanum vulgareFlavonoid · CHSblast+hmm High 90.7%817.5
THVU_c72017_g2_i1_len_1307
Thymus vulgarisFlavonoid · CHSblast+hmm High 90.5%817.4
VIAG_c40890_g1_i1_len_1516
Vitex agnus-castusFlavonoid · CHSblast+hmm High 91.5%817.4
Pat_B30G022200.m1
Pogostemon cablinFlavonoid · CHSblast+hmm High 90.2%817.3
AJRE_c26821_g1_i1_len_1549
Ajuga reptansFlavonoid · CHSblast+hmm High 90.7%817.2
GWHPBJVA021059
Thymus quinquecostatusFlavonoid · CHSblast+hmm High 90.5%817.2
COTO_c3908_g1_i1_len_1636
Congea tomentosaFlavonoid · CHSblast+hmm High 90.7%817.1
evm.model.LG10.809
Clinopodium barosmumFlavonoid · CHSblast+hmm High 91.0%817.1
Roff10690082190
Salvia rosmarinusFlavonoid · CHSblast+hmm High 90.7%816.6
Pat_A29G029900.m1
Pogostemon cablinFlavonoid · CHSblast+hmm High 89.9%816.4
XP_047948346.1
Salvia hispanicaFlavonoid · CHSblast+hmm High 90.7%816.4
Stenogyne_calaminthoides__EVM_prediction_HiC_scaffold_41.2834.mRNA1
Stenogyne calaminthoidesFlavonoid · CHSblast+hmm High 90.4%815.6
Stenogyne_calaminthoides__EVM_prediction_HiC_scaffold_41.2836.mRNA1
Stenogyne calaminthoidesFlavonoid · CHSblast+hmm High 90.4%815.6
Es4A.G127900.t1
Elsholtzia splendensFlavonoid · CHSblast+hmm High 90.2%815.0
Es4B.G127600.t1
Elsholtzia splendensFlavonoid · CHSblast+hmm High 90.2%815.0
Sch000022377
Schizonepeta tenuifoliaFlavonoid · CHSblast+hmm High 91.2%814.9
g38584.t1
Hyssopus officinalisFlavonoid · CHSblast+hmm High 90.4%814.9
MACO_g20023.t1
Marmoritis complanataFlavonoid · CHSblast+hmm High 90.4%814.5
AG34_scaffold4_04360T
Agastache rugosaFlavonoid · CHSblast+hmm High 90.7%814.4
AGFO_c48542_g1_i1_len_1595
Agastache foeniculumFlavonoid · CHSblast+hmm High 90.7%814.4
MEPI_c56995_g1_i1_len_1769
Mentha x piperitaFlavonoid · CHSblast+hmm High 90.7%814.4
Mlonscaffold_5_length_432313370129180.1.v1.326
Mentha longifoliaFlavonoid · CHSblast+hmm High 90.7%814.4
LAAN_c45701_g1_i2_len_1493
Lavandula angustifoliaFlavonoid · CHSblast+hmm High 90.7%814.0
STOF_c41460_g1_i1_len_1370
Stachys officinalisFlavonoid · CHSblast+hmm High 89.4%813.9
evm.model.LG08.765
Clinopodium barosmumFlavonoid · CHSblast+hmm High 90.5%813.9
Smil04G0025870.1.v1.484
Salvia miltiorrhizaFlavonoid · CHSblast+hmm High 91.5%813.8
evm.model.chr9.4445
Prunella vulgarisFlavonoid · CHSblast+hmm High 89.9%813.8
Clgra_038441-T1
Clinopodium gracileFlavonoid · CHSblast+hmm High 90.2%813.7
Dru_4G0015900.1
Dracocephalum rupestreFlavonoid · CHSblast+hmm High 90.4%813.7
MESP_c34056_g2_i1_len_1755
Mentha spicataFlavonoid · CHSblast+hmm High 90.7%813.5
tectona_grandis_Tg04g11560.t1
Tectona grandisFlavonoid · CHSblast+hmm High 90.7%813.5
1167.g1.t1
Ocimum basilicumFlavonoid · CHSblast+hmm High 91.0%812.9
g10682.t1
Nepeta mussiniiFlavonoid · CHSblast+hmm High 89.9%812.7
Stenogyne_calaminthoides__EVM_prediction_HiC_scaffold_1.285.mRNA1
Stenogyne calaminthoidesFlavonoid · CHSblast+hmm High 89.1%812.4
KAL8479795.1
Phlomoides rotataFlavonoid · CHSblast+hmm High 89.7%812.2
GMPH_c90543_g1_i1_len_1523
Gmelina philippensisFlavonoid · CHSblast+hmm High 88.9%812.1
Roff2983940375880
Salvia rosmarinusFlavonoid · CHSblast+hmm High 90.7%812.0
KAL1548339.1
Salvia divinorumFlavonoid · CHSblast+hmm High 90.2%811.7
g36556.t1
Nepeta catariaFlavonoid · CHSblast+hmm High 89.7%811.7
rna-gnl|WGS:QFCC|chr10_49444901_49446550.mrna1
Perilla frutescensFlavonoid · CHSblast+hmm High 89.7%811.7