LamiOmicsDB Lamiaceae Multi-Omics Database
v1 808 species · 3 phylogenies · 6,313 sequences

Pathway-family scientific record

IFR

IFR enzyme-family module

This module includes PlantSME enzyme-family assignments and traceable candidate protein identifiers from genome-derived or transcriptome-derived protein sets.

Browse candidatesCompare speciesCSV
Stable locus plantsmeFlavonoid biosynthesis
Public candidate IDs
1,136
Species with candidates
80
Species with assignments
80
Source assignments
1,137
Gene-tree candidates
0
Motif candidates
0

Evidence profile

Available evidence layers

◆Candidate identifiers1,136 public species-linked identifiers can be inspected.
GTGene-tree workflow0 comparable source candidates; 0 high-confidence source calls.
MMotif-screen proxy0 motif-screen candidates; 0 with all required motif proxies.
100 kbLocal clustering proxy0 clusters across 0 species; maximum cluster size 0.

Comparative signature

Lamiaceae comparison fields

Rate delta
Not calculated
Prevalence delta
Not calculated
Comparable source
PlantSME family assignments
Comparable source count
1,137
Public candidate count
1,136
Evidence mode
plantsme

Species coverage

Assignment and locus coverage by species

Source family counts and public candidate identifiers are shown in separate columns.

SpeciesEvidence stateSource countCandidate IDsExpression
Teucrium chamaedrysAjugoideae · Teucrium Stable locus 5150 No matrix
Pogostemon cablinLamioideae · Pogostemon Stable locus 5050 Available
Teucrium marumAjugoideae · Teucrium Stable locus 4040 No matrix
Ocimum basilicumNepetoideae · Ocimum Stable locus 3333 Available
Callicarpa americanaCallicarpoideae · Callicarpa Stable locus 2929 No matrix
Salvia splendensNepetoideae · Salvia Stable locus 2727 No matrix
Nepeta catariaNepetoideae · Nepeta Stable locus 2626 Available
Stenogyne calaminthoidesLamioideae · Stenogyne Stable locus 2424 No matrix
Tectona grandisTectonoideae · Tectona Stable locus 2222 Available
Elsholtzia splendensNepetoideae · Elsholtzia Stable locus 2121 No matrix
Salvia hispanicaNepetoideae · Salvia Stable locus 2020 No matrix
Clinopodium barosmumNepetoideae · Clinopodium Stable locus 1919 No matrix
Hyptis suaveolensNepetoideae · Hyptis Stable locus 1919 No matrix
Glechoma longitubaNepetoideae · Glechoma Stable locus 1818 No matrix
Gmelina philippensisPremnoideae · Gmelina Stable locus 1717 No matrix
Isodon lophanthoidesNepetoideae · Isodon Stable locus 1717 No matrix
Perilla frutescensNepetoideae · Perilla Stable locus 1717 No matrix
Plectranthus barbatusNepetoideae · Plectranthus Stable locus 1717 No matrix
Callicarpa nudifloraCallicarpoideae · Callicarpa Stable locus 1616 No matrix
Isodon serraNepetoideae · Isodon Stable locus 1616 No matrix
Petraeovitex bambusetoriumPeronematoideae · Petraeovitex Stable locus 1515 No matrix
Salvia divinorumNepetoideae · Salvia Stable locus 1515 No matrix
Cornutia pyramidataPremnoideae · Cornutia Stable locus 1414 No matrix
Ocimum tenuiflorumNepetoideae · Ocimum Stable locus 1414 No matrix
Prunella vulgarisNepetoideae · Prunella Stable locus 1414 No matrix
Salvia rosmarinusNepetoideae · Salvia Stable locus 1414 Available
Dracocephalum rupestreNepetoideae · Dracocephalum Stable locus 1313 No matrix
Glechoma hederaceaNepetoideae · Glechoma Stable locus 1313 No matrix
Hyssopus officinalisNepetoideae · Hyssopus Stable locus 1313 No matrix
Leonotis leonurusLamioideae · Leonotis Stable locus 1313 No matrix
Melissa officinalisNepetoideae · Melissa Stable locus 1313 No matrix
Mentha longifoliaNepetoideae · Mentha Stable locus 1313 Available
Premna microphyllaPremnoideae · Premna Stable locus 1313 No matrix
Salvia miltiorrhizaNepetoideae · Salvia Stable locus 1313 Available
Stachys officinalisLamioideae · Stachys Stable locus 1313 No matrix
Vitex agnus-castusViticoideae · Vitex Stable locus 1313 No matrix
Congea tomentosaSymphorematoideae · Congea Stable locus 1212 No matrix
Holmskioldia sanguineaScutellarioideae · Holmskioldia Stable locus 1212 No matrix
Lavandula angustifoliaNepetoideae · Lavandula Stable locus 1212 No matrix
Perovskia atriplicifoliaNepetoideae · Perovskia Stable locus 1212 No matrix
Prostanthera lasianthosProstantheroideae · Prostanthera Stable locus 1212 No matrix
Scutellaria baicalensisScutellarioideae · Scutellaria Stable locus 1212 No matrix
Teucrium canadenseAjugoideae · Teucrium Stable locus 1212 No matrix
Thymus vulgarisNepetoideae · Thymus Stable locus 1212 No matrix
Ballota pseudodictamnusLamioideae · Ballota Stable locus 1111 No matrix
Clinopodium gracileNepetoideae · Clinopodium Stable locus 1111 No matrix
Lycopus americanusNepetoideae · Lycopus Stable locus 1111 No matrix
Mosla chinensisNepetoideae · Mosla Stable locus 1111 No matrix
Mosla soochowensisNepetoideae · Mosla Stable locus 1111 No matrix
Phlomis fruticosaLamioideae · Phlomis Stable locus 1111 No matrix
Salvia bowleyanaNepetoideae · Salvia Stable locus 1111 No matrix
Salvia sclareaNepetoideae · Salvia Stable locus 1111 No matrix
Scutellaria barbataScutellarioideae · Scutellaria Stable locus 1111 No matrix
Mentha x piperitaNepetoideae · Mentha Stable locus 1010 No matrix
Monarda didymaNepetoideae · Monarda Stable locus 1010 No matrix
Nepeta mussiniiNepetoideae · Nepeta Stable locus 1010 Available
Phlomoides rotataLamioideae · Phlomoides Stable locus 1010 No matrix
Thymus quinquecostatusNepetoideae · Thymus Stable locus 1010 No matrix
Clerodendrum bungeiAjugoideae · Clerodendrum Stable locus 99 No matrix
Collinsonia canadensisNepetoideae · Collinsonia Stable locus 99 No matrix
Leonurus cardiacaLamioideae · Leonurus Stable locus 99 No matrix
Leonurus japonicusLamioideae · Leonurus Stable locus 99 No matrix
Leonurus sibiricusLamioideae · Leonurus Stable locus 99 No matrix
Marrubium vulgareLamioideae · Marrubium Stable locus 99 No matrix
Rotheca myricoidesAjugoideae · Rotheca Stable locus 99 No matrix
Schizonepeta tenuifoliaNepetoideae · Schizonepeta Stable locus 99 No matrix
Agastache foeniculumNepetoideae · Agastache Stable locus 88 No matrix
Agastache rugosaNepetoideae · Agastache Stable locus 88 No matrix
Lamium albumLamioideae · Lamium Stable locus 88 No matrix
Mentha spicataNepetoideae · Mentha Stable locus 88 No matrix
Origanum majoranaNepetoideae · Origanum Stable locus 88 No matrix
Origanum vulgareNepetoideae · Origanum Stable locus 88 No matrix
Perilla citriodoraNepetoideae · Perilla Stable locus 88 No matrix
Perilla frutescens var. hirtellaNepetoideae · Perilla Stable locus 88 No matrix
Westringia fruticosaProstantheroideae · Westringia Stable locus 88 No matrix
Ajuga decumbensAjugoideae · Ajuga Stable locus 77 No matrix
Marmoritis complanataNepetoideae · Marmoritis Stable locus 77 No matrix
Salvia officinalisNepetoideae · Salvia Stable locus 77 No matrix
Ajuga reptansAjugoideae · Ajuga Stable locus 66 No matrix
Drepanocaryum sewerzowiiNepetoideae · Drepanocaryum Stable locus 66 No matrix

Candidate records

Traceable candidate identifiers

Filter and inspect candidate identifiers for this family.

Clear
Candidate IDSpeciesPathway / familyEvidenceConfidenceIdentityHMM score
GMPH_c29905_g1_i1_len_869
Gmelina philippensisFlavonoid · IFRblast+hmm High 66.1%138.4
g9659.t1
Salvia sclareaFlavonoid · IFRblast+hmm High 64.8%138.4
BAPS_c44811_g3_i4_len_1181
Ballota pseudodictamnusFlavonoid · IFRblast+hmm High 62.0%138.3
SAOF_c38561_g1_i1_len_1146
Salvia officinalisFlavonoid · IFRblast+hmm High 69.1%138.3
Smil03G0021000.1.v1.484
Salvia miltiorrhizaFlavonoid · IFRblast+hmm High 62.5%138.3
g9660.t1
Salvia sclareaFlavonoid · IFRblast+hmm High 69.7%138.2
24:ILLG5G32.54m1
Isodon lophanthoidesFlavonoid · IFRblast+hmm High 61.1%138.1
CAame04G0005120.v1.94
Callicarpa americanaFlavonoid · IFRblast+hmm High 63.4%138.1
MESP_c36567_g1_i1_len_1177
Mentha spicataFlavonoid · IFRblast+hmm High 63.9%138.1
SAOF_c20565_g1_i1_len_1120
Salvia officinalisFlavonoid · IFRblast+hmm High 63.6%138.0
GLHE_c64523_g1_i1_len_1264
Glechoma hederaceaFlavonoid · IFRblast+hmm High 69.7%137.9
Sbow05G0019050.1
Salvia bowleyanaFlavonoid · IFRblast+hmm High 65.4%137.9
XP_042061203.1
Salvia splendensFlavonoid · IFRblast+hmm High 61.0%137.9
XP_042061204.1
Salvia splendensFlavonoid · IFRblast+hmm High 61.0%137.9
XP_042061205.1
Salvia splendensFlavonoid · IFRblast+hmm High 61.0%137.9
XP_042061206.1
Salvia splendensFlavonoid · IFRblast+hmm High 61.0%137.9
Teucrium_chamaedrys__Tcha132237
Teucrium chamaedrysFlavonoid · IFRblast+hmm High 61.9%137.8
Teucrium_chamaedrys__Tcha154624
Teucrium chamaedrysFlavonoid · IFRblast+hmm High 62.6%137.8
Dru_3G0012570.1
Dracocephalum rupestreFlavonoid · IFRblast+hmm High 62.5%137.7
Mc1g41920.1
Mosla chinensisFlavonoid · IFRblast+hmm High 64.6%137.5
Sbai6A141T58.1
Scutellaria baicalensisFlavonoid · IFRblast+hmm High 67.1%137.5
XP_047956628.1
Salvia hispanicaFlavonoid · IFRblast+hmm High 64.9%137.5
Teum.05G022610.1
Teucrium marumFlavonoid · IFRblast+hmm High 63.2%137.4
GWHPBJVA020011
Thymus quinquecostatusFlavonoid · IFRblast+hmm High 61.8%137.1
Teucrium_chamaedrys__Tcha70954
Teucrium chamaedrysFlavonoid · IFRblast+hmm High 63.2%137.1
evm.model.Chr06.246
Callicarpa nudifloraFlavonoid · IFRblast+hmm High 63.8%137.1
LELE_c3087_g1_i1_len_739
Leonotis leonurusFlavonoid · IFRblast+hmm High 66.2%137.0
LYAM_c89426_g1_i1_len_1368
Lycopus americanusFlavonoid · IFRblast+hmm High 69.4%137.0
PLBA_c40293_g1_i1_len_1365
Plectranthus barbatusFlavonoid · IFRblast+hmm High 68.7%137.0
Es3A.G160100.t1
Elsholtzia splendensFlavonoid · IFRblast+hmm High 63.9%136.9
MESP_c40200_g1_i2_len_1089
Mentha spicataFlavonoid · IFRblast+hmm High 56.1%136.9
g9657.t1
Salvia sclareaFlavonoid · IFRblast+hmm High 65.8%136.7
Es3B.G159700.t1
Elsholtzia splendensFlavonoid · IFRblast+hmm High 64.3%136.6
PEBA_c41244_g2_i1_len_1212
Petraeovitex bambusetoriumFlavonoid · IFRblast+hmm High 66.9%136.6
Roff3459090394500
Salvia rosmarinusFlavonoid · IFRblast+hmm High 68.1%136.6
Smil03G0020980.1.v1.484
Salvia miltiorrhizaFlavonoid · IFRblast+hmm High 61.8%136.6
Ls1g28100.1
Leonurus sibiricusFlavonoid · IFRblast+hmm High 67.4%136.5
Lj6g18080.1
Leonurus japonicusFlavonoid · IFRblast+hmm High 67.1%136.4
Sch000006414
Schizonepeta tenuifoliaFlavonoid · IFRblast+hmm High 68.4%136.4
LYAM_c35379_g1_i1_len_1318
Lycopus americanusFlavonoid · IFRblast+hmm High 65.1%136.3
Teucrium_chamaedrys__Tcha47572
Teucrium chamaedrysFlavonoid · IFRblast+hmm High 62.9%136.1
Es4A.G286400.t1
Elsholtzia splendensFlavonoid · IFRblast+hmm High 70.4%135.8
KAL1546758.1
Salvia divinorumFlavonoid · IFRblast+hmm High 65.8%135.8
MAVU_c21016_g2_i1_len_2156
Marrubium vulgareFlavonoid · IFRblast+hmm High 66.2%135.8
Roff10350050410
Salvia rosmarinusFlavonoid · IFRblast+hmm High 66.8%135.8
Sbow05G0019070.1
Salvia bowleyanaFlavonoid · IFRblast+hmm High 63.2%135.8
Smil00G0041120.1.v1.484
Salvia miltiorrhizaFlavonoid · IFRblast+hmm High 63.6%135.8
MEPI_c54963_g1_i1_len_1242
Mentha x piperitaFlavonoid · IFRblast+hmm High 63.6%135.7
Mlonscaffold_11_length_299437840026290.1.v1.326
Mentha longifoliaFlavonoid · IFRblast+hmm High 63.6%135.7
tectona_grandis_Tg03g01550.t1
Tectona grandisFlavonoid · IFRblast+hmm High 60.7%135.5