LamiOmicsDB Lamiaceae Multi-Omics Database
v1 808 species · 3 phylogenies · 6,313 sequences

Pathway-family scientific record

IFR

IFR enzyme-family module

This module includes PlantSME enzyme-family assignments and traceable candidate protein identifiers from genome-derived or transcriptome-derived protein sets.

Browse candidatesCompare speciesCSV
Stable locus plantsmeFlavonoid biosynthesis
Public candidate IDs
1,136
Species with candidates
80
Species with assignments
80
Source assignments
1,137
Gene-tree candidates
0
Motif candidates
0

Evidence profile

Available evidence layers

◆Candidate identifiers1,136 public species-linked identifiers can be inspected.
GTGene-tree workflow0 comparable source candidates; 0 high-confidence source calls.
MMotif-screen proxy0 motif-screen candidates; 0 with all required motif proxies.
100 kbLocal clustering proxy0 clusters across 0 species; maximum cluster size 0.

Comparative signature

Lamiaceae comparison fields

Rate delta
Not calculated
Prevalence delta
Not calculated
Comparable source
PlantSME family assignments
Comparable source count
1,137
Public candidate count
1,136
Evidence mode
plantsme

Species coverage

Assignment and locus coverage by species

Source family counts and public candidate identifiers are shown in separate columns.

SpeciesEvidence stateSource countCandidate IDsExpression
Teucrium chamaedrysAjugoideae · Teucrium Stable locus 5150 No matrix
Pogostemon cablinLamioideae · Pogostemon Stable locus 5050 Available
Teucrium marumAjugoideae · Teucrium Stable locus 4040 No matrix
Ocimum basilicumNepetoideae · Ocimum Stable locus 3333 Available
Callicarpa americanaCallicarpoideae · Callicarpa Stable locus 2929 No matrix
Salvia splendensNepetoideae · Salvia Stable locus 2727 No matrix
Nepeta catariaNepetoideae · Nepeta Stable locus 2626 Available
Stenogyne calaminthoidesLamioideae · Stenogyne Stable locus 2424 No matrix
Tectona grandisTectonoideae · Tectona Stable locus 2222 Available
Elsholtzia splendensNepetoideae · Elsholtzia Stable locus 2121 No matrix
Salvia hispanicaNepetoideae · Salvia Stable locus 2020 No matrix
Clinopodium barosmumNepetoideae · Clinopodium Stable locus 1919 No matrix
Hyptis suaveolensNepetoideae · Hyptis Stable locus 1919 No matrix
Glechoma longitubaNepetoideae · Glechoma Stable locus 1818 No matrix
Gmelina philippensisPremnoideae · Gmelina Stable locus 1717 No matrix
Isodon lophanthoidesNepetoideae · Isodon Stable locus 1717 No matrix
Perilla frutescensNepetoideae · Perilla Stable locus 1717 No matrix
Plectranthus barbatusNepetoideae · Plectranthus Stable locus 1717 No matrix
Callicarpa nudifloraCallicarpoideae · Callicarpa Stable locus 1616 No matrix
Isodon serraNepetoideae · Isodon Stable locus 1616 No matrix
Petraeovitex bambusetoriumPeronematoideae · Petraeovitex Stable locus 1515 No matrix
Salvia divinorumNepetoideae · Salvia Stable locus 1515 No matrix
Cornutia pyramidataPremnoideae · Cornutia Stable locus 1414 No matrix
Ocimum tenuiflorumNepetoideae · Ocimum Stable locus 1414 No matrix
Prunella vulgarisNepetoideae · Prunella Stable locus 1414 No matrix
Salvia rosmarinusNepetoideae · Salvia Stable locus 1414 Available
Dracocephalum rupestreNepetoideae · Dracocephalum Stable locus 1313 No matrix
Glechoma hederaceaNepetoideae · Glechoma Stable locus 1313 No matrix
Hyssopus officinalisNepetoideae · Hyssopus Stable locus 1313 No matrix
Leonotis leonurusLamioideae · Leonotis Stable locus 1313 No matrix
Melissa officinalisNepetoideae · Melissa Stable locus 1313 No matrix
Mentha longifoliaNepetoideae · Mentha Stable locus 1313 Available
Premna microphyllaPremnoideae · Premna Stable locus 1313 No matrix
Salvia miltiorrhizaNepetoideae · Salvia Stable locus 1313 Available
Stachys officinalisLamioideae · Stachys Stable locus 1313 No matrix
Vitex agnus-castusViticoideae · Vitex Stable locus 1313 No matrix
Congea tomentosaSymphorematoideae · Congea Stable locus 1212 No matrix
Holmskioldia sanguineaScutellarioideae · Holmskioldia Stable locus 1212 No matrix
Lavandula angustifoliaNepetoideae · Lavandula Stable locus 1212 No matrix
Perovskia atriplicifoliaNepetoideae · Perovskia Stable locus 1212 No matrix
Prostanthera lasianthosProstantheroideae · Prostanthera Stable locus 1212 No matrix
Scutellaria baicalensisScutellarioideae · Scutellaria Stable locus 1212 No matrix
Teucrium canadenseAjugoideae · Teucrium Stable locus 1212 No matrix
Thymus vulgarisNepetoideae · Thymus Stable locus 1212 No matrix
Ballota pseudodictamnusLamioideae · Ballota Stable locus 1111 No matrix
Clinopodium gracileNepetoideae · Clinopodium Stable locus 1111 No matrix
Lycopus americanusNepetoideae · Lycopus Stable locus 1111 No matrix
Mosla chinensisNepetoideae · Mosla Stable locus 1111 No matrix
Mosla soochowensisNepetoideae · Mosla Stable locus 1111 No matrix
Phlomis fruticosaLamioideae · Phlomis Stable locus 1111 No matrix
Salvia bowleyanaNepetoideae · Salvia Stable locus 1111 No matrix
Salvia sclareaNepetoideae · Salvia Stable locus 1111 No matrix
Scutellaria barbataScutellarioideae · Scutellaria Stable locus 1111 No matrix
Mentha x piperitaNepetoideae · Mentha Stable locus 1010 No matrix
Monarda didymaNepetoideae · Monarda Stable locus 1010 No matrix
Nepeta mussiniiNepetoideae · Nepeta Stable locus 1010 Available
Phlomoides rotataLamioideae · Phlomoides Stable locus 1010 No matrix
Thymus quinquecostatusNepetoideae · Thymus Stable locus 1010 No matrix
Clerodendrum bungeiAjugoideae · Clerodendrum Stable locus 99 No matrix
Collinsonia canadensisNepetoideae · Collinsonia Stable locus 99 No matrix
Leonurus cardiacaLamioideae · Leonurus Stable locus 99 No matrix
Leonurus japonicusLamioideae · Leonurus Stable locus 99 No matrix
Leonurus sibiricusLamioideae · Leonurus Stable locus 99 No matrix
Marrubium vulgareLamioideae · Marrubium Stable locus 99 No matrix
Rotheca myricoidesAjugoideae · Rotheca Stable locus 99 No matrix
Schizonepeta tenuifoliaNepetoideae · Schizonepeta Stable locus 99 No matrix
Agastache foeniculumNepetoideae · Agastache Stable locus 88 No matrix
Agastache rugosaNepetoideae · Agastache Stable locus 88 No matrix
Lamium albumLamioideae · Lamium Stable locus 88 No matrix
Mentha spicataNepetoideae · Mentha Stable locus 88 No matrix
Origanum majoranaNepetoideae · Origanum Stable locus 88 No matrix
Origanum vulgareNepetoideae · Origanum Stable locus 88 No matrix
Perilla citriodoraNepetoideae · Perilla Stable locus 88 No matrix
Perilla frutescens var. hirtellaNepetoideae · Perilla Stable locus 88 No matrix
Westringia fruticosaProstantheroideae · Westringia Stable locus 88 No matrix
Ajuga decumbensAjugoideae · Ajuga Stable locus 77 No matrix
Marmoritis complanataNepetoideae · Marmoritis Stable locus 77 No matrix
Salvia officinalisNepetoideae · Salvia Stable locus 77 No matrix
Ajuga reptansAjugoideae · Ajuga Stable locus 66 No matrix
Drepanocaryum sewerzowiiNepetoideae · Drepanocaryum Stable locus 66 No matrix

Candidate records

Traceable candidate identifiers

Filter and inspect candidate identifiers for this family.

Clear
Candidate IDSpeciesPathway / familyEvidenceConfidenceIdentityHMM score
origanum_vulgare_826.g3.t1
Origanum vulgareFlavonoid · IFRblast+hmm High 61.5%135.4
KAL1539539.1
Salvia divinorumFlavonoid · IFRblast+hmm High 65.6%135.3
Ls1g28020.1
Leonurus sibiricusFlavonoid · IFRblast+hmm High 66.2%135.3
MEOF_c14246_g2_i1_len_1256
Melissa officinalisFlavonoid · IFRblast+hmm High 67.1%135.3
scutellaria_barbata_GWHPAOTP024367
Scutellaria barbataFlavonoid · IFRblast+hmm High 68.4%135.2
24:ILLG5G32.52m1
Isodon lophanthoidesFlavonoid · IFRblast+hmm High 68.0%135.1
STOF_c61666_g1_i1_len_1084
Stachys officinalisFlavonoid · IFRblast+hmm High 66.6%135.1
evm.model.ptg000011l.723
Isodon serraFlavonoid · IFRblast+hmm High 68.0%135.1
HYSU_c57729_g1_i1_len_920
Hyptis suaveolensFlavonoid · IFRblast+hmm High 67.1%135.0
Teucrium_chamaedrys__Tcha106179
Teucrium chamaedrysFlavonoid · IFRblast+hmm High 65.8%134.9
CAame11G0019080.v1.94
Callicarpa americanaFlavonoid · IFRblast+hmm High 66.9%134.8
Smil03G0021010.1.v1.484
Salvia miltiorrhizaFlavonoid · IFRblast+hmm High 62.5%134.8
Sbow05G0019060.1
Salvia bowleyanaFlavonoid · IFRblast+hmm High 62.5%134.7
evm.model.LG20.1308
Clinopodium barosmumFlavonoid · IFRblast+hmm High 63.3%134.7
Es4B.G284200.t1
Elsholtzia splendensFlavonoid · IFRblast+hmm High 70.0%134.6
PLBA_c17281_g1_i1_len_1495
Plectranthus barbatusFlavonoid · IFRblast+hmm High 65.6%134.6
Teucrium_chamaedrys__Tcha206220
Teucrium chamaedrysFlavonoid · IFRblast+hmm High 63.3%134.5
HOSA_c43551_g1_i1_len_1175
Holmskioldia sanguineaFlavonoid · IFRblast+hmm High 65.6%134.4
Roff10350050400
Salvia rosmarinusFlavonoid · IFRblast+hmm High 67.5%134.4
evm.model.chr9.2788
Prunella vulgarisFlavonoid · IFRblast+hmm High 66.1%134.4
LAAL_c29241_g1_i1_len_1289
Lamium albumFlavonoid · IFRblast+hmm High 67.8%134.2
evm.model.Chr10.968
Callicarpa nudifloraFlavonoid · IFRblast+hmm High 67.2%134.2
AJRE_c37922_g1_i2_len_1011
Ajuga reptansFlavonoid · IFRblast+hmm High 65.7%134.1
LAAN_c45660_g1_i1_len_1309
Lavandula angustifoliaFlavonoid · IFRblast+hmm High 64.0%134.1
PEAT_c40663_g1_i1_len_1189
Perovskia atriplicifoliaFlavonoid · IFRblast+hmm High 68.8%134.1
ORMA_c55095_g1_i1_len_1240
Origanum majoranaFlavonoid · IFRblast+hmm High 62.0%134.0
GWHPBJVA018170
Thymus quinquecostatusFlavonoid · IFRblast+hmm High 63.9%133.9
AJRE_c39762_g1_i1_len_1837
Ajuga reptansFlavonoid · IFRblast+hmm High 66.0%133.7
PRMI_c44909_g1_i3_len_876
Premna microphyllaFlavonoid · IFRblast+hmm High 69.5%133.7
TECA_c26693_g1_i1_len_1150
Teucrium canadenseFlavonoid · IFRblast+hmm High 61.0%133.7
origanum_vulgare_125883.g198.t1
Origanum vulgareFlavonoid · IFRblast+hmm High 63.0%133.7
Teucrium_chamaedrys__Tcha153840
Teucrium chamaedrysFlavonoid · IFRblast+hmm High 63.3%133.6
XP_042056385.1
Salvia splendensFlavonoid · IFRblast+hmm High 65.5%133.5
KAL1546757.1
Salvia divinorumFlavonoid · IFRblast+hmm High 65.7%133.4
XP_047938163.1
Salvia hispanicaFlavonoid · IFRblast+hmm High 67.4%133.4
Sch000006250
Schizonepeta tenuifoliaFlavonoid · IFRblast+hmm High 64.5%133.3
CAame11G0019070.v1.94
Callicarpa americanaFlavonoid · IFRblast+hmm High 64.1%133.2
ORMA_c49906_g1_i2_len_1249
Origanum majoranaFlavonoid · IFRblast+hmm High 53.4%133.1
scutellaria_barbata_GWHPAOTP024370
Scutellaria barbataFlavonoid · IFRblast+hmm High 66.9%133.1
BAPS_c46007_g1_i1_len_1156
Ballota pseudodictamnusFlavonoid · IFRblast+hmm High 64.9%133.0
LELE_c35675_g1_i1_len_1222
Leonotis leonurusFlavonoid · IFRblast+hmm High 61.2%133.0
PEBA_c41244_g1_i3_len_1271
Petraeovitex bambusetoriumFlavonoid · IFRblast+hmm High 61.4%132.9
XP_047981597.1
Salvia hispanicaFlavonoid · IFRblast+hmm High 65.5%132.9
LAAL_c33336_g4_i2_len_1296
Lamium albumFlavonoid · IFRblast+hmm High 54.5%132.8
HYSU_c35698_g1_i1_len_1096
Hyptis suaveolensFlavonoid · IFRblast+hmm High 69.4%132.5
Teucrium_chamaedrys__Tcha153844
Teucrium chamaedrysFlavonoid · IFRblast+hmm High 63.0%132.5
Sbow02G0009350.1
Salvia bowleyanaFlavonoid · IFRblast+hmm High 63.0%132.4
tectona_grandis_Tg03g01560.t1
Tectona grandisFlavonoid · IFRblast+hmm High 60.7%132.4
tectona_grandis_TgUn457g00020.t1
Tectona grandisFlavonoid · IFRblast+hmm High 60.7%132.4
Teucrium_chamaedrys__Tcha112847
Teucrium chamaedrysFlavonoid · IFRblast+hmm High 63.9%132.2