LamiOmicsDB Lamiaceae Multi-Omics Database
v1 808 species · 3 phylogenies · 6,313 sequences

Pathway-family scientific record

PAL

Phenylalanine ammonia-lyase family

This module includes PlantSME enzyme-family assignments and traceable candidate protein identifiers from genome-derived or transcriptome-derived protein sets.

Browse candidatesCompare speciesCSV
Stable locus plantsmePhenylpropanoid biosynthesis
Public candidate IDs
1,715
Species with candidates
71
Species with assignments
71
Source assignments
2,467
Gene-tree candidates
0
Motif candidates
0

Evidence profile

Available evidence layers

◆Candidate identifiers1,715 public species-linked identifiers can be inspected.
GTGene-tree workflow0 comparable source candidates; 0 high-confidence source calls.
MMotif-screen proxy0 motif-screen candidates; 0 with all required motif proxies.
100 kbLocal clustering proxy0 clusters across 0 species; maximum cluster size 0.

Comparative signature

Lamiaceae comparison fields

Rate delta
0.01 · higher in Lamiaceae
Prevalence delta
0
Comparable source
PlantSME family assignments
Comparable source count
2,467
Public candidate count
1,715
Evidence mode
plantsme

Species coverage

Assignment and locus coverage by species

Source family counts and public candidate identifiers are shown in separate columns.

SpeciesEvidence stateSource countCandidate IDsExpression
Stenogyne calaminthoidesLamioideae · Stenogyne Stable locus 23950 No matrix
Rotheca myricoidesAjugoideae · Rotheca Stable locus 19950 No matrix
Pogostemon cablinLamioideae · Pogostemon Stable locus 16650 Available
Ajuga decumbensAjugoideae · Ajuga Stable locus 14850 No matrix
Plectranthus barbatusNepetoideae · Plectranthus Stable locus 8350 No matrix
Mentha x piperitaNepetoideae · Mentha Stable locus 7850 No matrix
Westringia fruticosaProstantheroideae · Westringia Stable locus 7550 No matrix
Glechoma hederaceaNepetoideae · Glechoma Stable locus 7250 No matrix
Vitex agnus-castusViticoideae · Vitex Stable locus 7150 No matrix
Ajuga reptansAjugoideae · Ajuga Stable locus 6950 No matrix
Collinsonia canadensisNepetoideae · Collinsonia Stable locus 6850 No matrix
Prostanthera lasianthosProstantheroideae · Prostanthera Stable locus 6650 No matrix
Salvia splendensNepetoideae · Salvia Stable locus 5850 No matrix
Stachys officinalisLamioideae · Stachys Stable locus 5750 No matrix
Holmskioldia sanguineaScutellarioideae · Holmskioldia Stable locus 5350 No matrix
Phlomis fruticosaLamioideae · Phlomis Stable locus 5050 No matrix
Prunella vulgarisNepetoideae · Prunella Stable locus 4949 No matrix
Thymus vulgarisNepetoideae · Thymus Stable locus 4646 No matrix
Mentha spicataNepetoideae · Mentha Stable locus 4545 No matrix
Origanum majoranaNepetoideae · Origanum Stable locus 4040 No matrix
Petraeovitex bambusetoriumPeronematoideae · Petraeovitex Stable locus 4040 No matrix
Mosla chinensisNepetoideae · Mosla Stable locus 3939 No matrix
Premna microphyllaPremnoideae · Premna Stable locus 3737 No matrix
Cornutia pyramidataPremnoideae · Cornutia Stable locus 3434 No matrix
Clerodendrum bungeiAjugoideae · Clerodendrum Stable locus 3333 No matrix
Salvia hispanicaNepetoideae · Salvia Stable locus 3333 No matrix
Lavandula angustifoliaNepetoideae · Lavandula Stable locus 3131 No matrix
Congea tomentosaSymphorematoideae · Congea Stable locus 3030 No matrix
Dracocephalum rupestreNepetoideae · Dracocephalum Stable locus 3030 No matrix
Monarda didymaNepetoideae · Monarda Stable locus 2727 No matrix
Lamium albumLamioideae · Lamium Stable locus 2525 No matrix
Lycopus americanusNepetoideae · Lycopus Stable locus 2424 No matrix
Teucrium canadenseAjugoideae · Teucrium Stable locus 2424 No matrix
Thymus quinquecostatusNepetoideae · Thymus Stable locus 2424 No matrix
Mosla soochowensisNepetoideae · Mosla Stable locus 2323 No matrix
Ballota pseudodictamnusLamioideae · Ballota Stable locus 2020 No matrix
Drepanocaryum sewerzowiiNepetoideae · Drepanocaryum Stable locus 1818 No matrix
Hyptis suaveolensNepetoideae · Hyptis Stable locus 1818 No matrix
Marrubium vulgareLamioideae · Marrubium Stable locus 1717 No matrix
Leonurus cardiacaLamioideae · Leonurus Stable locus 1616 No matrix
Perovskia atriplicifoliaNepetoideae · Perovskia Stable locus 1515 No matrix
Salvia miltiorrhizaNepetoideae · Salvia Stable locus 1414 Available
Agastache foeniculumNepetoideae · Agastache Stable locus 1313 No matrix
Scutellaria barbataScutellarioideae · Scutellaria Stable locus 1313 No matrix
Leonotis leonurusLamioideae · Leonotis Stable locus 1212 No matrix
Salvia divinorumNepetoideae · Salvia Stable locus 1111 No matrix
Teucrium marumAjugoideae · Teucrium Stable locus 1111 No matrix
Salvia officinalisNepetoideae · Salvia Stable locus 1010 No matrix
Melissa officinalisNepetoideae · Melissa Stable locus 99 No matrix
Scutellaria baicalensisScutellarioideae · Scutellaria Stable locus 99 No matrix
Teucrium chamaedrysAjugoideae · Teucrium Stable locus 99 No matrix
Perilla citriodoraNepetoideae · Perilla Stable locus 66 No matrix
Perilla frutescens var. hirtellaNepetoideae · Perilla Stable locus 66 No matrix
Elsholtzia splendensNepetoideae · Elsholtzia Stable locus 55 No matrix
Marmoritis complanataNepetoideae · Marmoritis Stable locus 55 No matrix
Mentha longifoliaNepetoideae · Mentha Stable locus 55 Available
Origanum vulgareNepetoideae · Origanum Stable locus 55 No matrix
Leonurus japonicusLamioideae · Leonurus Stable locus 44 No matrix
Leonurus sibiricusLamioideae · Leonurus Stable locus 44 No matrix
Gmelina philippensisPremnoideae · Gmelina Stable locus 33 No matrix
Nepeta catariaNepetoideae · Nepeta Stable locus 33 Available
Ocimum basilicumNepetoideae · Ocimum Stable locus 33 Available
Ocimum tenuiflorumNepetoideae · Ocimum Stable locus 33 No matrix
Perilla frutescensNepetoideae · Perilla Stable locus 33 No matrix
Salvia sclareaNepetoideae · Salvia Stable locus 33 No matrix
Phlomoides rotataLamioideae · Phlomoides Stable locus 22 No matrix
Schizonepeta tenuifoliaNepetoideae · Schizonepeta Stable locus 22 No matrix
Callicarpa americanaCallicarpoideae · Callicarpa Stable locus 11 No matrix
Clinopodium gracileNepetoideae · Clinopodium Stable locus 11 No matrix
Salvia bowleyanaNepetoideae · Salvia Stable locus 11 No matrix
Tectona grandisTectonoideae · Tectona Stable locus 11 Available

Candidate records

Traceable candidate identifiers

Filter and inspect candidate identifiers for this family.

Clear
Candidate IDSpeciesPathway / familyEvidenceConfidenceIdentityHMM score
752.g136.t1
Ocimum basilicumPhenylpropanoid · PALblast Medium 33.9%—
AGFO_c34964_g1_i1_len_302
Agastache foeniculumPhenylpropanoid · PALblast Medium 31.2%—
AGFO_c50183_g1_i1_len_465
Agastache foeniculumPhenylpropanoid · PALblast Medium 33.0%—
BAPS_c11243_g1_i1_len_267
Ballota pseudodictamnusPhenylpropanoid · PALblast Medium 56.5%—
BAPS_c16466_g1_i1_len_415
Ballota pseudodictamnusPhenylpropanoid · PALblast Medium 32.4%—
BAPS_c41019_g2_i2_len_890
Ballota pseudodictamnusPhenylpropanoid · PALblast Medium 36.3%—
CLBU_c24654_g1_i1_len_323
Clerodendrum bungeiPhenylpropanoid · PALblast Medium 36.5%—
CLBU_c28299_g1_i1_len_654
Clerodendrum bungeiPhenylpropanoid · PALblast Medium 39.0%—
CLBU_c64475_g1_i1_len_358
Clerodendrum bungeiPhenylpropanoid · PALblast Medium 31.1%—
COPY_c109586_g1_i1_len_434
Cornutia pyramidataPhenylpropanoid · PALblast Medium 39.0%—
COPY_c12668_g1_i1_len_697
Cornutia pyramidataPhenylpropanoid · PALblast Medium 47.5%—
COPY_c128410_g1_i1_len_301
Cornutia pyramidataPhenylpropanoid · PALblast Medium 51.9%—
COPY_c20296_g1_i1_len_1486
Cornutia pyramidataPhenylpropanoid · PALblast Medium 40.2%—
COPY_c41381_g1_i1_len_768
Cornutia pyramidataPhenylpropanoid · PALblast Medium 42.6%—
COPY_c44857_g1_i1_len_377
Cornutia pyramidataPhenylpropanoid · PALblast Medium 36.1%—
COPY_c47848_g1_i1_len_600
Cornutia pyramidataPhenylpropanoid · PALblast Medium 32.4%—
COPY_c47848_g2_i1_len_633
Cornutia pyramidataPhenylpropanoid · PALblast Medium 47.7%—
COPY_c56825_g1_i1_len_321
Cornutia pyramidataPhenylpropanoid · PALblast Medium 57.5%—
COPY_c6624_g1_i1_len_400
Cornutia pyramidataPhenylpropanoid · PALblast Medium 39.7%—
COPY_c69897_g1_i2_len_1406
Cornutia pyramidataPhenylpropanoid · PALblast Medium 40.5%—
COPY_c71524_g1_i2_len_1343
Cornutia pyramidataPhenylpropanoid · PALblast Medium 36.7%—
COPY_c81515_g2_i1_len_363
Cornutia pyramidataPhenylpropanoid · PALblast Medium 38.9%—
COPY_c94254_g1_i1_len_443
Cornutia pyramidataPhenylpropanoid · PALblast Medium 38.3%—
COTO_c102192_g1_i1_len_252
Congea tomentosaPhenylpropanoid · PALblast Medium 33.3%—
COTO_c19135_g1_i1_len_846
Congea tomentosaPhenylpropanoid · PALblast Medium 40.5%—
COTO_c39202_g1_i1_len_1573
Congea tomentosaPhenylpropanoid · PALblast Medium 38.0%—
COTO_c46603_g1_i1_len_3152
Congea tomentosaPhenylpropanoid · PALblast Medium 32.3%—
COTO_c83443_g1_i1_len_327
Congea tomentosaPhenylpropanoid · PALblast Medium 43.1%—
Clgra_000131-T1
Clinopodium gracilePhenylpropanoid · PALblast Medium 40.6%—
DRSE_g10023.t1
Drepanocaryum sewerzowiiPhenylpropanoid · PALblast Medium 32.8%—
DRSE_g20950.t1
Drepanocaryum sewerzowiiPhenylpropanoid · PALblast Medium 41.4%—
Dru_1G0039580.1
Dracocephalum rupestrePhenylpropanoid · PALblast Medium 35.4%—
Dru_2G0002070.1
Dracocephalum rupestrePhenylpropanoid · PALblast Medium 30.3%—
Dru_2G0002070.2
Dracocephalum rupestrePhenylpropanoid · PALblast Medium 30.3%—
Dru_2G0002070.3
Dracocephalum rupestrePhenylpropanoid · PALblast Medium 30.3%—
Es2A.G326400.t1
Elsholtzia splendensPhenylpropanoid · PALblast Medium 35.5%—
GWHPBJVA013589
Thymus quinquecostatusPhenylpropanoid · PALblast Medium 32.4%—
GWHPBJVA016499
Thymus quinquecostatusPhenylpropanoid · PALblast Medium 35.4%—
GWHPBJVA023640
Thymus quinquecostatusPhenylpropanoid · PALblast Medium 30.8%—
HYSU_c10955_g1_i1_len_596
Hyptis suaveolensPhenylpropanoid · PALblast Medium 37.0%—
HYSU_c1706_g1_i1_len_266
Hyptis suaveolensPhenylpropanoid · PALblast Medium 55.0%—
HYSU_c56851_g1_i1_len_714
Hyptis suaveolensPhenylpropanoid · PALblast Medium 43.7%—
HYSU_c65325_g1_i1_len_272
Hyptis suaveolensPhenylpropanoid · PALblast Medium 72.2%—
HYSU_c77506_g1_i1_len_255
Hyptis suaveolensPhenylpropanoid · PALblast Medium 35.9%—
HYSU_c78625_g1_i1_len_493
Hyptis suaveolensPhenylpropanoid · PALblast Medium 37.6%—
HYSU_c91338_g1_i1_len_971
Hyptis suaveolensPhenylpropanoid · PALblast Medium 35.2%—
KAL1549229.1
Salvia divinorumPhenylpropanoid · PALblast Medium 36.6%—
KAL8535383.1
Phlomoides rotataPhenylpropanoid · PALblast Medium 73.0%—
LAAL_c1741_g1_i1_len_272
Lamium albumPhenylpropanoid · PALblast Medium 38.9%—
LAAL_c3085_g1_i1_len_975
Lamium albumPhenylpropanoid · PALblast Medium 33.9%—