LamiOmicsDB Lamiaceae Multi-Omics Database
v1 808 species · 3 phylogenies · 6,313 sequences

Pathway-family scientific record

PAL

Phenylalanine ammonia-lyase family

This module includes PlantSME enzyme-family assignments and traceable candidate protein identifiers from genome-derived or transcriptome-derived protein sets.

Browse candidatesCompare speciesCSV
Stable locus plantsmePhenylpropanoid biosynthesis
Public candidate IDs
1,715
Species with candidates
71
Species with assignments
71
Source assignments
2,467
Gene-tree candidates
0
Motif candidates
0

Evidence profile

Available evidence layers

◆Candidate identifiers1,715 public species-linked identifiers can be inspected.
GTGene-tree workflow0 comparable source candidates; 0 high-confidence source calls.
MMotif-screen proxy0 motif-screen candidates; 0 with all required motif proxies.
100 kbLocal clustering proxy0 clusters across 0 species; maximum cluster size 0.

Comparative signature

Lamiaceae comparison fields

Rate delta
0.01 · higher in Lamiaceae
Prevalence delta
0
Comparable source
PlantSME family assignments
Comparable source count
2,467
Public candidate count
1,715
Evidence mode
plantsme

Species coverage

Assignment and locus coverage by species

Source family counts and public candidate identifiers are shown in separate columns.

SpeciesEvidence stateSource countCandidate IDsExpression
Stenogyne calaminthoidesLamioideae · Stenogyne Stable locus 23950 No matrix
Rotheca myricoidesAjugoideae · Rotheca Stable locus 19950 No matrix
Pogostemon cablinLamioideae · Pogostemon Stable locus 16650 Available
Ajuga decumbensAjugoideae · Ajuga Stable locus 14850 No matrix
Plectranthus barbatusNepetoideae · Plectranthus Stable locus 8350 No matrix
Mentha x piperitaNepetoideae · Mentha Stable locus 7850 No matrix
Westringia fruticosaProstantheroideae · Westringia Stable locus 7550 No matrix
Glechoma hederaceaNepetoideae · Glechoma Stable locus 7250 No matrix
Vitex agnus-castusViticoideae · Vitex Stable locus 7150 No matrix
Ajuga reptansAjugoideae · Ajuga Stable locus 6950 No matrix
Collinsonia canadensisNepetoideae · Collinsonia Stable locus 6850 No matrix
Prostanthera lasianthosProstantheroideae · Prostanthera Stable locus 6650 No matrix
Salvia splendensNepetoideae · Salvia Stable locus 5850 No matrix
Stachys officinalisLamioideae · Stachys Stable locus 5750 No matrix
Holmskioldia sanguineaScutellarioideae · Holmskioldia Stable locus 5350 No matrix
Phlomis fruticosaLamioideae · Phlomis Stable locus 5050 No matrix
Prunella vulgarisNepetoideae · Prunella Stable locus 4949 No matrix
Thymus vulgarisNepetoideae · Thymus Stable locus 4646 No matrix
Mentha spicataNepetoideae · Mentha Stable locus 4545 No matrix
Origanum majoranaNepetoideae · Origanum Stable locus 4040 No matrix
Petraeovitex bambusetoriumPeronematoideae · Petraeovitex Stable locus 4040 No matrix
Mosla chinensisNepetoideae · Mosla Stable locus 3939 No matrix
Premna microphyllaPremnoideae · Premna Stable locus 3737 No matrix
Cornutia pyramidataPremnoideae · Cornutia Stable locus 3434 No matrix
Clerodendrum bungeiAjugoideae · Clerodendrum Stable locus 3333 No matrix
Salvia hispanicaNepetoideae · Salvia Stable locus 3333 No matrix
Lavandula angustifoliaNepetoideae · Lavandula Stable locus 3131 No matrix
Congea tomentosaSymphorematoideae · Congea Stable locus 3030 No matrix
Dracocephalum rupestreNepetoideae · Dracocephalum Stable locus 3030 No matrix
Monarda didymaNepetoideae · Monarda Stable locus 2727 No matrix
Lamium albumLamioideae · Lamium Stable locus 2525 No matrix
Lycopus americanusNepetoideae · Lycopus Stable locus 2424 No matrix
Teucrium canadenseAjugoideae · Teucrium Stable locus 2424 No matrix
Thymus quinquecostatusNepetoideae · Thymus Stable locus 2424 No matrix
Mosla soochowensisNepetoideae · Mosla Stable locus 2323 No matrix
Ballota pseudodictamnusLamioideae · Ballota Stable locus 2020 No matrix
Drepanocaryum sewerzowiiNepetoideae · Drepanocaryum Stable locus 1818 No matrix
Hyptis suaveolensNepetoideae · Hyptis Stable locus 1818 No matrix
Marrubium vulgareLamioideae · Marrubium Stable locus 1717 No matrix
Leonurus cardiacaLamioideae · Leonurus Stable locus 1616 No matrix
Perovskia atriplicifoliaNepetoideae · Perovskia Stable locus 1515 No matrix
Salvia miltiorrhizaNepetoideae · Salvia Stable locus 1414 Available
Agastache foeniculumNepetoideae · Agastache Stable locus 1313 No matrix
Scutellaria barbataScutellarioideae · Scutellaria Stable locus 1313 No matrix
Leonotis leonurusLamioideae · Leonotis Stable locus 1212 No matrix
Salvia divinorumNepetoideae · Salvia Stable locus 1111 No matrix
Teucrium marumAjugoideae · Teucrium Stable locus 1111 No matrix
Salvia officinalisNepetoideae · Salvia Stable locus 1010 No matrix
Melissa officinalisNepetoideae · Melissa Stable locus 99 No matrix
Scutellaria baicalensisScutellarioideae · Scutellaria Stable locus 99 No matrix
Teucrium chamaedrysAjugoideae · Teucrium Stable locus 99 No matrix
Perilla citriodoraNepetoideae · Perilla Stable locus 66 No matrix
Perilla frutescens var. hirtellaNepetoideae · Perilla Stable locus 66 No matrix
Elsholtzia splendensNepetoideae · Elsholtzia Stable locus 55 No matrix
Marmoritis complanataNepetoideae · Marmoritis Stable locus 55 No matrix
Mentha longifoliaNepetoideae · Mentha Stable locus 55 Available
Origanum vulgareNepetoideae · Origanum Stable locus 55 No matrix
Leonurus japonicusLamioideae · Leonurus Stable locus 44 No matrix
Leonurus sibiricusLamioideae · Leonurus Stable locus 44 No matrix
Gmelina philippensisPremnoideae · Gmelina Stable locus 33 No matrix
Nepeta catariaNepetoideae · Nepeta Stable locus 33 Available
Ocimum basilicumNepetoideae · Ocimum Stable locus 33 Available
Ocimum tenuiflorumNepetoideae · Ocimum Stable locus 33 No matrix
Perilla frutescensNepetoideae · Perilla Stable locus 33 No matrix
Salvia sclareaNepetoideae · Salvia Stable locus 33 No matrix
Phlomoides rotataLamioideae · Phlomoides Stable locus 22 No matrix
Schizonepeta tenuifoliaNepetoideae · Schizonepeta Stable locus 22 No matrix
Callicarpa americanaCallicarpoideae · Callicarpa Stable locus 11 No matrix
Clinopodium gracileNepetoideae · Clinopodium Stable locus 11 No matrix
Salvia bowleyanaNepetoideae · Salvia Stable locus 11 No matrix
Tectona grandisTectonoideae · Tectona Stable locus 11 Available

Candidate records

Traceable candidate identifiers

Filter and inspect candidate identifiers for this family.

Clear
Candidate IDSpeciesPathway / familyEvidenceConfidenceIdentityHMM score
Teucrium_chamaedrys__Tcha51539
Teucrium chamaedrysPhenylpropanoid · PALblast Medium 37.5%—
Teucrium_chamaedrys__Tcha74000
Teucrium chamaedrysPhenylpropanoid · PALblast Medium 32.9%—
Teucrium_chamaedrys__Tcha87691
Teucrium chamaedrysPhenylpropanoid · PALblast Medium 36.0%—
Teucrium_chamaedrys__Tcha91255
Teucrium chamaedrysPhenylpropanoid · PALblast Medium 33.0%—
Teum.03G002070.1
Teucrium marumPhenylpropanoid · PALblast Medium 35.0%—
Teum.08G013520.1
Teucrium marumPhenylpropanoid · PALblast Medium 31.5%—
Teum.08G024540.1
Teucrium marumPhenylpropanoid · PALblast Medium 36.5%—
Teum.09G005580.1
Teucrium marumPhenylpropanoid · PALblast Medium 33.0%—
Teum.10G023950.1
Teucrium marumPhenylpropanoid · PALblast Medium 36.8%—
XP_047953734.1
Salvia hispanicaPhenylpropanoid · PALblast Medium 31.3%—
XP_047954127.1
Salvia hispanicaPhenylpropanoid · PALblast Medium 33.2%—
XP_047978522.1
Salvia hispanicaPhenylpropanoid · PALblast Medium 31.4%—
evm.model.chr10.1829
Prunella vulgarisPhenylpropanoid · PALblast Medium 32.5%—
evm.model.chr14.844
Prunella vulgarisPhenylpropanoid · PALblast Medium 32.7%—
evm.model.chr5.198
Prunella vulgarisPhenylpropanoid · PALblast Medium 31.4%—
evm.model.chr7.2399
Prunella vulgarisPhenylpropanoid · PALblast Medium 45.8%—
evm.model.chr8.1220
Prunella vulgarisPhenylpropanoid · PALblast Medium 41.8%—
evm.model.chr8.985
Prunella vulgarisPhenylpropanoid · PALblast Medium 32.7%—
evm.model.chr9.4208
Prunella vulgarisPhenylpropanoid · PALblast Medium 36.3%—
ocimum_sanctum_Ote100128880051
Ocimum tenuiflorumPhenylpropanoid · PALblast Medium 37.0%—
ocimum_sanctum_Ote100128880052
Ocimum tenuiflorumPhenylpropanoid · PALblast Medium 34.4%—
ocimum_sanctum_Ote100228680001
Ocimum tenuiflorumPhenylpropanoid · PALblast Medium 74.6%—
rna-gnl|WGS:QFCC|chr15_39937671_39938045.mrna1
Perilla frutescensPhenylpropanoid · PALblast Medium 36.1%—
rna-gnl|WGS:QIYW|chr01_59448900_59452144.mrna1
Perilla citriodoraPhenylpropanoid · PALblast Medium 46.6%—
rna-gnl|WGS:QIYW|chr01_59448900_59452144.mrna1
Perilla frutescens var. hirtellaPhenylpropanoid · PALblast Medium 46.6%—
rna-gnl|WGS:QIYW|chr04_09446559_09447344.mrna1
Perilla citriodoraPhenylpropanoid · PALblast Medium 34.8%—
rna-gnl|WGS:QIYW|chr04_09446559_09447344.mrna1
Perilla frutescens var. hirtellaPhenylpropanoid · PALblast Medium 34.8%—
rna-gnl|WGS:QIYW|chr09_14232904_14233278.mrna1
Perilla citriodoraPhenylpropanoid · PALblast Medium 36.1%—
rna-gnl|WGS:QIYW|chr09_14232904_14233278.mrna1
Perilla frutescens var. hirtellaPhenylpropanoid · PALblast Medium 36.1%—
g30243.t1
Ajuga decumbensPhenylpropanoid · PALhmm Medium —194.3
WEFR_c43228_g1_i4_len_3941
Westringia fruticosaPhenylpropanoid · PALhmm Medium —191.3
Dru_3G0006430.1
Dracocephalum rupestrePhenylpropanoid · PALhmm Medium —184.5
Dru_5G0021140.1
Dracocephalum rupestrePhenylpropanoid · PALhmm Medium —184.5
scutellaria_barbata_GWHPAOTP007209
Scutellaria barbataPhenylpropanoid · PALhmm Medium —183.3
WEFR_c44373_g1_i2_len_5497
Westringia fruticosaPhenylpropanoid · PALhmm Medium —177.7
PRMI_c44669_g1_i2_len_2888
Premna microphyllaPhenylpropanoid · PALhmm Medium —174.4
Smil01G0028630.1.v1.484
Salvia miltiorrhizaPhenylpropanoid · PALhmm Medium —172.1
Smil00G0047120.1.v1.484
Salvia miltiorrhizaPhenylpropanoid · PALhmm Medium —171.8
BAPS_c44627_g1_i1_len_4058
Ballota pseudodictamnusPhenylpropanoid · PALhmm Medium —167.1
Pat_A15G133200.m1
Pogostemon cablinPhenylpropanoid · PALhmm Medium —166.4
Pat_A08G093300.m1
Pogostemon cablinPhenylpropanoid · PALhmm Medium —164.5
Dru_1G0020880.1
Dracocephalum rupestrePhenylpropanoid · PALhmm Medium —162.3
Smil06G0012580.1.v1.484
Salvia miltiorrhizaPhenylpropanoid · PALhmm Medium —157.7
Pat_A10G037200.m1
Pogostemon cablinPhenylpropanoid · PALhmm Medium —156.3
Sbai4P297T38.1
Scutellaria baicalensisPhenylpropanoid · PALhmm Medium —154.0
GMPH_c28365_g1_i2_len_2631
Gmelina philippensisPhenylpropanoid · PALhmm Medium —152.9
Sbai1P438T31.1
Scutellaria baicalensisPhenylpropanoid · PALhmm Medium —152.7
Pat_A28G100200.m1
Pogostemon cablinPhenylpropanoid · PALhmm Medium —148.0
ROMY_c84477_g3_i4_len_3404
Rotheca myricoidesPhenylpropanoid · PALhmm Medium —147.2
Pat_A06G223000.m1
Pogostemon cablinPhenylpropanoid · PALhmm Medium —141.9