LamiOmicsDB Lamiaceae Multi-Omics Database
v1 808 species · 3 phylogenies · 6,313 sequences

Pathway-family scientific record

HYD1

HYD1 enzyme-family module

This module includes PlantSME enzyme-family assignments and traceable candidate protein identifiers from genome-derived or transcriptome-derived protein sets.

Browse candidatesCompare speciesCSV
Stable locus plantsmeSteroid and sterol biosynthesis
Public candidate IDs
242
Species with candidates
80
Species with assignments
80
Source assignments
242
Gene-tree candidates
0
Motif candidates
0

Evidence profile

Available evidence layers

◆Candidate identifiers242 public species-linked identifiers can be inspected.
GTGene-tree workflow0 comparable source candidates; 0 high-confidence source calls.
MMotif-screen proxy0 motif-screen candidates; 0 with all required motif proxies.
100 kbLocal clustering proxy0 clusters across 0 species; maximum cluster size 0.

Comparative signature

Lamiaceae comparison fields

Rate delta
Not calculated
Prevalence delta
Not calculated
Comparable source
PlantSME family assignments
Comparable source count
242
Public candidate count
242
Evidence mode
plantsme

Species coverage

Assignment and locus coverage by species

Source family counts and public candidate identifiers are shown in separate columns.

SpeciesEvidence stateSource countCandidate IDsExpression
Pogostemon cablinLamioideae · Pogostemon Stable locus 1111 Available
Teucrium marumAjugoideae · Teucrium Stable locus 1010 No matrix
Salvia splendensNepetoideae · Salvia Stable locus 99 No matrix
Hyssopus officinalisNepetoideae · Hyssopus Stable locus 88 No matrix
Nepeta catariaNepetoideae · Nepeta Stable locus 88 Available
Teucrium chamaedrysAjugoideae · Teucrium Stable locus 88 No matrix
Callicarpa americanaCallicarpoideae · Callicarpa Stable locus 77 No matrix
Ocimum basilicumNepetoideae · Ocimum Stable locus 55 Available
Phlomoides rotataLamioideae · Phlomoides Stable locus 55 No matrix
Ajuga decumbensAjugoideae · Ajuga Stable locus 44 No matrix
Ajuga reptansAjugoideae · Ajuga Stable locus 44 No matrix
Clerodendrum bungeiAjugoideae · Clerodendrum Stable locus 44 No matrix
Clinopodium barosmumNepetoideae · Clinopodium Stable locus 44 No matrix
Elsholtzia splendensNepetoideae · Elsholtzia Stable locus 44 No matrix
Glechoma longitubaNepetoideae · Glechoma Stable locus 44 No matrix
Isodon lophanthoidesNepetoideae · Isodon Stable locus 44 No matrix
Salvia rosmarinusNepetoideae · Salvia Stable locus 44 Available
Agastache rugosaNepetoideae · Agastache Stable locus 33 No matrix
Cornutia pyramidataPremnoideae · Cornutia Stable locus 33 No matrix
Isodon serraNepetoideae · Isodon Stable locus 33 No matrix
Leonurus sibiricusLamioideae · Leonurus Stable locus 33 No matrix
Mentha longifoliaNepetoideae · Mentha Stable locus 33 Available
Nepeta mussiniiNepetoideae · Nepeta Stable locus 33 Available
Origanum vulgareNepetoideae · Origanum Stable locus 33 No matrix
Perilla frutescensNepetoideae · Perilla Stable locus 33 No matrix
Phlomis fruticosaLamioideae · Phlomis Stable locus 33 No matrix
Prostanthera lasianthosProstantheroideae · Prostanthera Stable locus 33 No matrix
Prunella vulgarisNepetoideae · Prunella Stable locus 33 No matrix
Schizonepeta tenuifoliaNepetoideae · Schizonepeta Stable locus 33 No matrix
Scutellaria baicalensisScutellarioideae · Scutellaria Stable locus 33 No matrix
Stenogyne calaminthoidesLamioideae · Stenogyne Stable locus 33 No matrix
Tectona grandisTectonoideae · Tectona Stable locus 33 Available
Thymus vulgarisNepetoideae · Thymus Stable locus 33 No matrix
Agastache foeniculumNepetoideae · Agastache Stable locus 22 No matrix
Ballota pseudodictamnusLamioideae · Ballota Stable locus 22 No matrix
Callicarpa nudifloraCallicarpoideae · Callicarpa Stable locus 22 No matrix
Clinopodium gracileNepetoideae · Clinopodium Stable locus 22 No matrix
Collinsonia canadensisNepetoideae · Collinsonia Stable locus 22 No matrix
Congea tomentosaSymphorematoideae · Congea Stable locus 22 No matrix
Dracocephalum rupestreNepetoideae · Dracocephalum Stable locus 22 No matrix
Drepanocaryum sewerzowiiNepetoideae · Drepanocaryum Stable locus 22 No matrix
Glechoma hederaceaNepetoideae · Glechoma Stable locus 22 No matrix
Gmelina philippensisPremnoideae · Gmelina Stable locus 22 No matrix
Holmskioldia sanguineaScutellarioideae · Holmskioldia Stable locus 22 No matrix
Hyptis suaveolensNepetoideae · Hyptis Stable locus 22 No matrix
Lamium albumLamioideae · Lamium Stable locus 22 No matrix
Leonotis leonurusLamioideae · Leonotis Stable locus 22 No matrix
Leonurus cardiacaLamioideae · Leonurus Stable locus 22 No matrix
Leonurus japonicusLamioideae · Leonurus Stable locus 22 No matrix
Lycopus americanusNepetoideae · Lycopus Stable locus 22 No matrix
Marmoritis complanataNepetoideae · Marmoritis Stable locus 22 No matrix
Marrubium vulgareLamioideae · Marrubium Stable locus 22 No matrix
Melissa officinalisNepetoideae · Melissa Stable locus 22 No matrix
Mentha spicataNepetoideae · Mentha Stable locus 22 No matrix
Mentha x piperitaNepetoideae · Mentha Stable locus 22 No matrix
Monarda didymaNepetoideae · Monarda Stable locus 22 No matrix
Mosla chinensisNepetoideae · Mosla Stable locus 22 No matrix
Mosla soochowensisNepetoideae · Mosla Stable locus 22 No matrix
Ocimum tenuiflorumNepetoideae · Ocimum Stable locus 22 No matrix
Origanum majoranaNepetoideae · Origanum Stable locus 22 No matrix
Perilla citriodoraNepetoideae · Perilla Stable locus 22 No matrix
Perilla frutescens var. hirtellaNepetoideae · Perilla Stable locus 22 No matrix
Perovskia atriplicifoliaNepetoideae · Perovskia Stable locus 22 No matrix
Petraeovitex bambusetoriumPeronematoideae · Petraeovitex Stable locus 22 No matrix
Plectranthus barbatusNepetoideae · Plectranthus Stable locus 22 No matrix
Rotheca myricoidesAjugoideae · Rotheca Stable locus 22 No matrix
Salvia bowleyanaNepetoideae · Salvia Stable locus 22 No matrix
Salvia divinorumNepetoideae · Salvia Stable locus 22 No matrix
Salvia miltiorrhizaNepetoideae · Salvia Stable locus 22 Available
Salvia officinalisNepetoideae · Salvia Stable locus 22 No matrix
Salvia sclareaNepetoideae · Salvia Stable locus 22 No matrix
Scutellaria barbataScutellarioideae · Scutellaria Stable locus 22 No matrix
Stachys officinalisLamioideae · Stachys Stable locus 22 No matrix
Teucrium canadenseAjugoideae · Teucrium Stable locus 22 No matrix
Thymus quinquecostatusNepetoideae · Thymus Stable locus 22 No matrix
Vitex agnus-castusViticoideae · Vitex Stable locus 22 No matrix
Westringia fruticosaProstantheroideae · Westringia Stable locus 22 No matrix
Lavandula angustifoliaNepetoideae · Lavandula Stable locus 11 No matrix
Premna microphyllaPremnoideae · Premna Stable locus 11 No matrix
Salvia hispanicaNepetoideae · Salvia Stable locus 11 No matrix

Candidate records

Traceable candidate identifiers

Filter and inspect candidate identifiers for this family.

Clear
Candidate IDSpeciesPathway / familyEvidenceConfidenceIdentityHMM score
CAame06G0026270.v1.94
Callicarpa americanaSteroid / sterol · HYD1blast+hmm High 66.4%286.2
CAame06G0026280.v1.94
Callicarpa americanaSteroid / sterol · HYD1blast+hmm High 66.4%286.2
GMPH_c21706_g1_i1_len_1042
Gmelina philippensisSteroid / sterol · HYD1blast+hmm High 66.1%286.0
Pat_A18G071700.m1
Pogostemon cablinSteroid / sterol · HYD1blast+hmm High 70.0%285.3
evm.model.Chr02.1348
Callicarpa nudifloraSteroid / sterol · HYD1blast+hmm High 66.8%283.1
Pat_B18G061500.m1
Pogostemon cablinSteroid / sterol · HYD1blast+hmm High 69.0%280.1
g28490.t1
Nepeta catariaSteroid / sterol · HYD1blast+hmm High 71.1%279.7
HOSA_c108886_g1_i1_len_1108
Holmskioldia sanguineaSteroid / sterol · HYD1blast+hmm High 67.3%279.4
Pat_B17G063500.m1
Pogostemon cablinSteroid / sterol · HYD1blast+hmm High 69.0%279.4
Teucrium_chamaedrys__Tcha81711
Teucrium chamaedrysSteroid / sterol · HYD1blast+hmm High 65.9%278.1
Teucrium_chamaedrys__Tcha163122
Teucrium chamaedrysSteroid / sterol · HYD1blast+hmm High 69.0%277.8
tectona_grandis_Tg18g07950.t1
Tectona grandisSteroid / sterol · HYD1blast+hmm High 66.2%277.7
PRMI_c32857_g1_i2_len_1048
Premna microphyllaSteroid / sterol · HYD1blast+hmm High 65.9%277.5
g33661.t1
Nepeta catariaSteroid / sterol · HYD1blast+hmm High 71.1%277.5
g33661.t1.1.5b2d4a2e
Nepeta catariaSteroid / sterol · HYD1blast+hmm High 71.1%277.5
Teum.14G016600.1
Teucrium marumSteroid / sterol · HYD1blast+hmm High 69.5%277.3
Teum.14G016600.3
Teucrium marumSteroid / sterol · HYD1blast+hmm High 69.5%277.3
Teum.14G016600.4
Teucrium marumSteroid / sterol · HYD1blast+hmm High 69.5%277.3
COTO_c38545_g1_i1_len_1122
Congea tomentosaSteroid / sterol · HYD1blast+hmm High 66.2%277.1
Teum.14G016600.2
Teucrium marumSteroid / sterol · HYD1blast+hmm High 69.5%277.1
1276.g8.t1
Ocimum basilicumSteroid / sterol · HYD1blast+hmm High 71.0%276.8
MACO_g6536.t1
Marmoritis complanataSteroid / sterol · HYD1blast+hmm High 70.0%276.6
ORMA_c45878_g1_i1_len_906
Origanum majoranaSteroid / sterol · HYD1blast+hmm High 70.8%276.1
THVU_c74664_g1_i1_len_944
Thymus vulgarisSteroid / sterol · HYD1blast+hmm High 71.3%275.9
evm.model.LG02.829
Clinopodium barosmumSteroid / sterol · HYD1blast+hmm High 72.8%275.9
MEOF_c10908_g2_i1_len_1085
Melissa officinalisSteroid / sterol · HYD1blast+hmm High 69.1%275.6
STOF_c6355_g1_i1_len_1022
Stachys officinalisSteroid / sterol · HYD1blast+hmm High 60.1%275.5
Teucrium_chamaedrys__Tcha50970
Teucrium chamaedrysSteroid / sterol · HYD1blast+hmm High 70.0%275.2
GWHPBJVA005646
Thymus quinquecostatusSteroid / sterol · HYD1blast+hmm High 73.8%274.9
Pat_A17G066200.m1
Pogostemon cablinSteroid / sterol · HYD1blast+hmm High 68.5%274.7
evm.model.LG05.923
Clinopodium barosmumSteroid / sterol · HYD1blast+hmm High 73.3%274.7
COCA_c66534_g1_i3_len_1157
Collinsonia canadensisSteroid / sterol · HYD1blast+hmm High 71.4%274.6
LYAM_c7549_g1_i2_len_1054
Lycopus americanusSteroid / sterol · HYD1blast+hmm High 72.3%274.6
TECA_c34189_g13_i2_len_937
Teucrium canadenseSteroid / sterol · HYD1blast+hmm High 65.9%274.5
KAL8525952.1
Phlomoides rotataSteroid / sterol · HYD1blast+hmm High 69.9%273.9
KAL8525953.1
Phlomoides rotataSteroid / sterol · HYD1blast+hmm High 69.9%273.9
Sch000013753
Schizonepeta tenuifoliaSteroid / sterol · HYD1blast+hmm High 70.4%273.8
scutellaria_barbata_GWHPAOTP030887
Scutellaria barbataSteroid / sterol · HYD1blast+hmm High 65.0%273.8
GLHE_c59654_g2_i2_len_1099
Glechoma hederaceaSteroid / sterol · HYD1blast+hmm High 71.0%273.4
GlLon_014337-T1
Glechoma longitubaSteroid / sterol · HYD1blast+hmm High 71.4%273.4
g1602.t1
Salvia sclareaSteroid / sterol · HYD1blast+hmm High 71.8%273.4
AG34_scaffold2_27830T
Agastache rugosaSteroid / sterol · HYD1blast+hmm High 71.4%273.3
AGFO_c47444_g1_i1_len_1080
Agastache foeniculumSteroid / sterol · HYD1blast+hmm High 71.4%273.3
ocimum_sanctum_Ote100244760101
Ocimum tenuiflorumSteroid / sterol · HYD1blast+hmm High 65.7%273.2
DRSE_g11350.t1
Drepanocaryum sewerzowiiSteroid / sterol · HYD1blast+hmm High 73.8%273.1
PHFR_c61347_g1_i2_len_845
Phlomis fruticosaSteroid / sterol · HYD1blast+hmm High 68.6%272.9
Dru_2G0026130.1
Dracocephalum rupestreSteroid / sterol · HYD1blast+hmm High 70.9%272.7
origanum_vulgare_453.g11.t1
Origanum vulgareSteroid / sterol · HYD1blast+hmm High 69.4%272.6
origanum_vulgare_453.g11.t1.1.5db0b521
Origanum vulgareSteroid / sterol · HYD1blast+hmm High 69.4%272.6
evm.model.chr14.444
Prunella vulgarisSteroid / sterol · HYD1blast+hmm High 72.6%272.5