LamiOmicsDB Lamiaceae Multi-Omics Database
v1 808 species · 3 phylogenies · 6,313 sequences

Pathway-family scientific record

SQS_FDFT1

Squalene synthase / FDFT1 family

This module includes PlantSME enzyme-family assignments and traceable candidate protein identifiers from genome-derived or transcriptome-derived protein sets.

Browse candidatesCompare speciesCSV
Stable locus plantsmeSteroid and sterol biosynthesis
Public candidate IDs
630
Species with candidates
80
Species with assignments
80
Source assignments
630
Gene-tree candidates
0
Motif candidates
0

Evidence profile

Available evidence layers

◆Candidate identifiers630 public species-linked identifiers can be inspected.
GTGene-tree workflow0 comparable source candidates; 0 high-confidence source calls.
MMotif-screen proxy0 motif-screen candidates; 0 with all required motif proxies.
100 kbLocal clustering proxy0 clusters across 0 species; maximum cluster size 0.

Comparative signature

Lamiaceae comparison fields

Rate delta
Not calculated
Prevalence delta
Not calculated
Comparable source
PlantSME family assignments
Comparable source count
630
Public candidate count
630
Evidence mode
plantsme

Species coverage

Assignment and locus coverage by species

Source family counts and public candidate identifiers are shown in separate columns.

SpeciesEvidence stateSource countCandidate IDsExpression
Pogostemon cablinLamioideae · Pogostemon Stable locus 2929 Available
Salvia splendensNepetoideae · Salvia Stable locus 2525 No matrix
Callicarpa americanaCallicarpoideae · Callicarpa Stable locus 2222 No matrix
Phlomoides rotataLamioideae · Phlomoides Stable locus 2222 No matrix
Teucrium chamaedrysAjugoideae · Teucrium Stable locus 2121 No matrix
Nepeta catariaNepetoideae · Nepeta Stable locus 2020 Available
Teucrium marumAjugoideae · Teucrium Stable locus 1515 No matrix
Stenogyne calaminthoidesLamioideae · Stenogyne Stable locus 1414 No matrix
Ocimum basilicumNepetoideae · Ocimum Stable locus 1212 Available
Salvia hispanicaNepetoideae · Salvia Stable locus 1212 No matrix
Salvia rosmarinusNepetoideae · Salvia Stable locus 1212 Available
Clinopodium barosmumNepetoideae · Clinopodium Stable locus 1111 No matrix
Hyssopus officinalisNepetoideae · Hyssopus Stable locus 1111 No matrix
Nepeta mussiniiNepetoideae · Nepeta Stable locus 1111 Available
Elsholtzia splendensNepetoideae · Elsholtzia Stable locus 1010 No matrix
Stachys officinalisLamioideae · Stachys Stable locus 1010 No matrix
Thymus vulgarisNepetoideae · Thymus Stable locus 1010 No matrix
Gmelina philippensisPremnoideae · Gmelina Stable locus 99 No matrix
Origanum vulgareNepetoideae · Origanum Stable locus 99 No matrix
Perilla frutescensNepetoideae · Perilla Stable locus 99 No matrix
Ballota pseudodictamnusLamioideae · Ballota Stable locus 88 No matrix
Callicarpa nudifloraCallicarpoideae · Callicarpa Stable locus 88 No matrix
Leonotis leonurusLamioideae · Leonotis Stable locus 88 No matrix
Phlomis fruticosaLamioideae · Phlomis Stable locus 88 No matrix
Prunella vulgarisNepetoideae · Prunella Stable locus 88 No matrix
Salvia divinorumNepetoideae · Salvia Stable locus 88 No matrix
Agastache foeniculumNepetoideae · Agastache Stable locus 77 No matrix
Ajuga reptansAjugoideae · Ajuga Stable locus 77 No matrix
Marmoritis complanataNepetoideae · Marmoritis Stable locus 77 No matrix
Marrubium vulgareLamioideae · Marrubium Stable locus 77 No matrix
Monarda didymaNepetoideae · Monarda Stable locus 77 No matrix
Mosla soochowensisNepetoideae · Mosla Stable locus 77 No matrix
Ocimum tenuiflorumNepetoideae · Ocimum Stable locus 77 No matrix
Perovskia atriplicifoliaNepetoideae · Perovskia Stable locus 77 No matrix
Ajuga decumbensAjugoideae · Ajuga Stable locus 66 No matrix
Congea tomentosaSymphorematoideae · Congea Stable locus 66 No matrix
Dracocephalum rupestreNepetoideae · Dracocephalum Stable locus 66 No matrix
Drepanocaryum sewerzowiiNepetoideae · Drepanocaryum Stable locus 66 No matrix
Lamium albumLamioideae · Lamium Stable locus 66 No matrix
Leonurus japonicusLamioideae · Leonurus Stable locus 66 No matrix
Leonurus sibiricusLamioideae · Leonurus Stable locus 66 No matrix
Lycopus americanusNepetoideae · Lycopus Stable locus 66 No matrix
Petraeovitex bambusetoriumPeronematoideae · Petraeovitex Stable locus 66 No matrix
Plectranthus barbatusNepetoideae · Plectranthus Stable locus 66 No matrix
Prostanthera lasianthosProstantheroideae · Prostanthera Stable locus 66 No matrix
Salvia bowleyanaNepetoideae · Salvia Stable locus 66 No matrix
Scutellaria baicalensisScutellarioideae · Scutellaria Stable locus 66 No matrix
Teucrium canadenseAjugoideae · Teucrium Stable locus 66 No matrix
Agastache rugosaNepetoideae · Agastache Stable locus 55 No matrix
Clinopodium gracileNepetoideae · Clinopodium Stable locus 55 No matrix
Collinsonia canadensisNepetoideae · Collinsonia Stable locus 55 No matrix
Glechoma hederaceaNepetoideae · Glechoma Stable locus 55 No matrix
Glechoma longitubaNepetoideae · Glechoma Stable locus 55 No matrix
Holmskioldia sanguineaScutellarioideae · Holmskioldia Stable locus 55 No matrix
Hyptis suaveolensNepetoideae · Hyptis Stable locus 55 No matrix
Isodon lophanthoidesNepetoideae · Isodon Stable locus 55 No matrix
Isodon serraNepetoideae · Isodon Stable locus 55 No matrix
Lavandula angustifoliaNepetoideae · Lavandula Stable locus 55 No matrix
Leonurus cardiacaLamioideae · Leonurus Stable locus 55 No matrix
Melissa officinalisNepetoideae · Melissa Stable locus 55 No matrix
Mentha longifoliaNepetoideae · Mentha Stable locus 55 Available
Mentha spicataNepetoideae · Mentha Stable locus 55 No matrix
Mosla chinensisNepetoideae · Mosla Stable locus 55 No matrix
Perilla citriodoraNepetoideae · Perilla Stable locus 55 No matrix
Perilla frutescens var. hirtellaNepetoideae · Perilla Stable locus 55 No matrix
Rotheca myricoidesAjugoideae · Rotheca Stable locus 55 No matrix
Salvia miltiorrhizaNepetoideae · Salvia Stable locus 55 Available
Schizonepeta tenuifoliaNepetoideae · Schizonepeta Stable locus 55 No matrix
Tectona grandisTectonoideae · Tectona Stable locus 55 Available
Vitex agnus-castusViticoideae · Vitex Stable locus 55 No matrix
Clerodendrum bungeiAjugoideae · Clerodendrum Stable locus 44 No matrix
Mentha x piperitaNepetoideae · Mentha Stable locus 44 No matrix
Origanum majoranaNepetoideae · Origanum Stable locus 44 No matrix
Salvia officinalisNepetoideae · Salvia Stable locus 44 No matrix
Salvia sclareaNepetoideae · Salvia Stable locus 44 No matrix
Scutellaria barbataScutellarioideae · Scutellaria Stable locus 44 No matrix
Thymus quinquecostatusNepetoideae · Thymus Stable locus 44 No matrix
Westringia fruticosaProstantheroideae · Westringia Stable locus 44 No matrix
Cornutia pyramidataPremnoideae · Cornutia Stable locus 33 No matrix
Premna microphyllaPremnoideae · Premna Stable locus 33 No matrix

Candidate records

Traceable candidate identifiers

Filter and inspect candidate identifiers for this family.

Clear
Candidate IDSpeciesPathway / familyEvidenceConfidenceIdentityHMM score
Roff3901420463550
Salvia rosmarinusSteroid / sterol · SQS_FDFT1blast+hmm Medium 56.2%14.4
COTO_c37468_g1_i1_len_1483
Congea tomentosaSteroid / sterol · SQS_FDFT1blast+hmm Medium 56.4%14.1
COCA_c67188_g1_i1_len_1110
Collinsonia canadensisSteroid / sterol · SQS_FDFT1blast+hmm Medium 55.7%14.0
tectona_grandis_Tg16g07130.t1
Tectona grandisSteroid / sterol · SQS_FDFT1blast+hmm Medium 55.7%13.8
BAPS_c91961_g1_i1_len_283
Ballota pseudodictamnusSteroid / sterol · SQS_FDFT1blast+hmm Medium 75.0%13.7
HYSU_c20623_g1_i1_len_1369
Hyptis suaveolensSteroid / sterol · SQS_FDFT1blast+hmm Medium 56.0%13.5
evm.model.Chr02.1936
Callicarpa nudifloraSteroid / sterol · SQS_FDFT1blast+hmm Medium 56.0%13.2
Pat_A15G192600.m1
Pogostemon cablinSteroid / sterol · SQS_FDFT1blast+hmm Medium 55.6%13.1
Ms_c009g01628.1
Mosla soochowensisSteroid / sterol · SQS_FDFT1blast+hmm Medium 56.7%12.6
Pat_B15G177000.m1
Pogostemon cablinSteroid / sterol · SQS_FDFT1blast+hmm Medium 55.6%12.6
rna-gnl|WGS:QFCC|chr03_07936766_07937677.mrna1
Perilla frutescensSteroid / sterol · SQS_FDFT1blast+hmm Medium 56.0%12.6
rna-gnl|WGS:QIYW|chr01_66974489_66975400.mrna1
Perilla citriodoraSteroid / sterol · SQS_FDFT1blast+hmm Medium 56.4%12.6
rna-gnl|WGS:QIYW|chr01_66974489_66975400.mrna1
Perilla frutescens var. hirtellaSteroid / sterol · SQS_FDFT1blast+hmm Medium 56.4%12.6
rna-gnl|WGS:QFCC|chr09_05586423_05587334.mrna1
Perilla frutescensSteroid / sterol · SQS_FDFT1blast+hmm Medium 56.0%12.5
CAame06G0039580.v1.94
Callicarpa americanaSteroid / sterol · SQS_FDFT1blast+hmm Medium 54.2%12.4
CAame06G0039590.v1.94
Callicarpa americanaSteroid / sterol · SQS_FDFT1blast+hmm Medium 54.2%12.4
CAame06G0039600.v1.94
Callicarpa americanaSteroid / sterol · SQS_FDFT1blast+hmm Medium 54.2%12.4
CAame06G0039610.v1.94
Callicarpa americanaSteroid / sterol · SQS_FDFT1blast+hmm Medium 54.2%12.4
CAame06G0039620.v1.94
Callicarpa americanaSteroid / sterol · SQS_FDFT1blast+hmm Medium 54.2%12.4
Es2A.G098500.t1
Elsholtzia splendensSteroid / sterol · SQS_FDFT1blast+hmm Medium 55.9%12.4
Es2B.G099100.t1
Elsholtzia splendensSteroid / sterol · SQS_FDFT1blast+hmm Medium 55.9%12.4
Pat_A10G005700.m1
Pogostemon cablinSteroid / sterol · SQS_FDFT1blast+hmm Medium 55.6%12.4
Pat_A10G005700.m2
Pogostemon cablinSteroid / sterol · SQS_FDFT1blast+hmm Medium 55.6%12.4
KAL8550078.1
Phlomoides rotataSteroid / sterol · SQS_FDFT1blast+hmm Medium 62.4%11.6
CAame08G0002800.v1.94
Callicarpa americanaSteroid / sterol · SQS_FDFT1blast+hmm Medium 75.7%11.5
5:ILLG10G55.90m1
Isodon lophanthoidesSteroid / sterol · SQS_FDFT1blast+hmm Medium 55.9%11.4
evm.model.ptg000005l.802
Isodon serraSteroid / sterol · SQS_FDFT1blast+hmm Medium 55.9%11.4
COPY_c75588_g2_i2_len_1639
Cornutia pyramidataSteroid / sterol · SQS_FDFT1blast+hmm Medium 56.0%11.3
LYAM_c26571_g1_i1_len_2283
Lycopus americanusSteroid / sterol · SQS_FDFT1blast+hmm Medium 56.2%11.1
Teum.S028080.1
Teucrium marumSteroid / sterol · SQS_FDFT1blast+hmm Medium 64.8%10.7
ORMA_c21886_g1_i2_len_2081
Origanum majoranaSteroid / sterol · SQS_FDFT1blast+hmm Medium 75.2%10.2
Teum.S028080.4
Teucrium marumSteroid / sterol · SQS_FDFT1blast+hmm Medium 64.8%8.1
AGFO_c74897_g1_i1_len_450
Agastache foeniculumSteroid / sterol · SQS_FDFT1blast Medium 84.2%—
AGFO_c78593_g1_i1_len_652
Agastache foeniculumSteroid / sterol · SQS_FDFT1blast Medium 65.7%—
AJRE_c43893_g5_i1_len_533
Ajuga reptansSteroid / sterol · SQS_FDFT1blast Medium 72.2%—
BAPS_c113927_g1_i1_len_686
Ballota pseudodictamnusSteroid / sterol · SQS_FDFT1blast Medium 69.8%—
CAame08G0039300.v1.94
Callicarpa americanaSteroid / sterol · SQS_FDFT1blast Medium 48.4%—
COCA_c45851_g1_i2_len_610
Collinsonia canadensisSteroid / sterol · SQS_FDFT1blast Medium 82.4%—
COCA_c46126_g1_i3_len_537
Collinsonia canadensisSteroid / sterol · SQS_FDFT1blast Medium 72.2%—
COTO_c33924_g1_i2_len_442
Congea tomentosaSteroid / sterol · SQS_FDFT1blast Medium 74.7%—
GLHE_c18690_g1_i1_len_255
Glechoma hederaceaSteroid / sterol · SQS_FDFT1blast Medium 68.7%—
GMPH_c11662_g1_i1_len_317
Gmelina philippensisSteroid / sterol · SQS_FDFT1blast Medium 70.2%—
GMPH_c9153_g1_i1_len_696
Gmelina philippensisSteroid / sterol · SQS_FDFT1blast Medium 73.9%—
GMPH_c98183_g1_i1_len_534
Gmelina philippensisSteroid / sterol · SQS_FDFT1blast Medium 45.9%—
GMPH_c98800_g1_i1_len_498
Gmelina philippensisSteroid / sterol · SQS_FDFT1blast Medium 88.0%—
HOSA_c33148_g2_i1_len_839
Holmskioldia sanguineaSteroid / sterol · SQS_FDFT1blast Medium 71.9%—
HYSU_c62759_g1_i1_len_269
Hyptis suaveolensSteroid / sterol · SQS_FDFT1blast Medium 50.8%—
KAL8547279.1
Phlomoides rotataSteroid / sterol · SQS_FDFT1blast Medium 69.1%—
LAAN_c108035_g1_i1_len_333
Lavandula angustifoliaSteroid / sterol · SQS_FDFT1blast Medium 60.0%—
LAAN_c54193_g1_i1_len_1234
Lavandula angustifoliaSteroid / sterol · SQS_FDFT1blast Medium 57.7%—