LamiOmicsDB Lamiaceae Multi-Omics Database
v1 808 species · 3 phylogenies · 6,313 sequences

Pathway-family scientific record

SQS_FDFT1

Squalene synthase / FDFT1 family

This module includes PlantSME enzyme-family assignments and traceable candidate protein identifiers from genome-derived or transcriptome-derived protein sets.

Browse candidatesCompare speciesCSV
Stable locus plantsmeSteroid and sterol biosynthesis
Public candidate IDs
630
Species with candidates
80
Species with assignments
80
Source assignments
630
Gene-tree candidates
0
Motif candidates
0

Evidence profile

Available evidence layers

◆Candidate identifiers630 public species-linked identifiers can be inspected.
GTGene-tree workflow0 comparable source candidates; 0 high-confidence source calls.
MMotif-screen proxy0 motif-screen candidates; 0 with all required motif proxies.
100 kbLocal clustering proxy0 clusters across 0 species; maximum cluster size 0.

Comparative signature

Lamiaceae comparison fields

Rate delta
Not calculated
Prevalence delta
Not calculated
Comparable source
PlantSME family assignments
Comparable source count
630
Public candidate count
630
Evidence mode
plantsme

Species coverage

Assignment and locus coverage by species

Source family counts and public candidate identifiers are shown in separate columns.

SpeciesEvidence stateSource countCandidate IDsExpression
Pogostemon cablinLamioideae · Pogostemon Stable locus 2929 Available
Salvia splendensNepetoideae · Salvia Stable locus 2525 No matrix
Callicarpa americanaCallicarpoideae · Callicarpa Stable locus 2222 No matrix
Phlomoides rotataLamioideae · Phlomoides Stable locus 2222 No matrix
Teucrium chamaedrysAjugoideae · Teucrium Stable locus 2121 No matrix
Nepeta catariaNepetoideae · Nepeta Stable locus 2020 Available
Teucrium marumAjugoideae · Teucrium Stable locus 1515 No matrix
Stenogyne calaminthoidesLamioideae · Stenogyne Stable locus 1414 No matrix
Ocimum basilicumNepetoideae · Ocimum Stable locus 1212 Available
Salvia hispanicaNepetoideae · Salvia Stable locus 1212 No matrix
Salvia rosmarinusNepetoideae · Salvia Stable locus 1212 Available
Clinopodium barosmumNepetoideae · Clinopodium Stable locus 1111 No matrix
Hyssopus officinalisNepetoideae · Hyssopus Stable locus 1111 No matrix
Nepeta mussiniiNepetoideae · Nepeta Stable locus 1111 Available
Elsholtzia splendensNepetoideae · Elsholtzia Stable locus 1010 No matrix
Stachys officinalisLamioideae · Stachys Stable locus 1010 No matrix
Thymus vulgarisNepetoideae · Thymus Stable locus 1010 No matrix
Gmelina philippensisPremnoideae · Gmelina Stable locus 99 No matrix
Origanum vulgareNepetoideae · Origanum Stable locus 99 No matrix
Perilla frutescensNepetoideae · Perilla Stable locus 99 No matrix
Ballota pseudodictamnusLamioideae · Ballota Stable locus 88 No matrix
Callicarpa nudifloraCallicarpoideae · Callicarpa Stable locus 88 No matrix
Leonotis leonurusLamioideae · Leonotis Stable locus 88 No matrix
Phlomis fruticosaLamioideae · Phlomis Stable locus 88 No matrix
Prunella vulgarisNepetoideae · Prunella Stable locus 88 No matrix
Salvia divinorumNepetoideae · Salvia Stable locus 88 No matrix
Agastache foeniculumNepetoideae · Agastache Stable locus 77 No matrix
Ajuga reptansAjugoideae · Ajuga Stable locus 77 No matrix
Marmoritis complanataNepetoideae · Marmoritis Stable locus 77 No matrix
Marrubium vulgareLamioideae · Marrubium Stable locus 77 No matrix
Monarda didymaNepetoideae · Monarda Stable locus 77 No matrix
Mosla soochowensisNepetoideae · Mosla Stable locus 77 No matrix
Ocimum tenuiflorumNepetoideae · Ocimum Stable locus 77 No matrix
Perovskia atriplicifoliaNepetoideae · Perovskia Stable locus 77 No matrix
Ajuga decumbensAjugoideae · Ajuga Stable locus 66 No matrix
Congea tomentosaSymphorematoideae · Congea Stable locus 66 No matrix
Dracocephalum rupestreNepetoideae · Dracocephalum Stable locus 66 No matrix
Drepanocaryum sewerzowiiNepetoideae · Drepanocaryum Stable locus 66 No matrix
Lamium albumLamioideae · Lamium Stable locus 66 No matrix
Leonurus japonicusLamioideae · Leonurus Stable locus 66 No matrix
Leonurus sibiricusLamioideae · Leonurus Stable locus 66 No matrix
Lycopus americanusNepetoideae · Lycopus Stable locus 66 No matrix
Petraeovitex bambusetoriumPeronematoideae · Petraeovitex Stable locus 66 No matrix
Plectranthus barbatusNepetoideae · Plectranthus Stable locus 66 No matrix
Prostanthera lasianthosProstantheroideae · Prostanthera Stable locus 66 No matrix
Salvia bowleyanaNepetoideae · Salvia Stable locus 66 No matrix
Scutellaria baicalensisScutellarioideae · Scutellaria Stable locus 66 No matrix
Teucrium canadenseAjugoideae · Teucrium Stable locus 66 No matrix
Agastache rugosaNepetoideae · Agastache Stable locus 55 No matrix
Clinopodium gracileNepetoideae · Clinopodium Stable locus 55 No matrix
Collinsonia canadensisNepetoideae · Collinsonia Stable locus 55 No matrix
Glechoma hederaceaNepetoideae · Glechoma Stable locus 55 No matrix
Glechoma longitubaNepetoideae · Glechoma Stable locus 55 No matrix
Holmskioldia sanguineaScutellarioideae · Holmskioldia Stable locus 55 No matrix
Hyptis suaveolensNepetoideae · Hyptis Stable locus 55 No matrix
Isodon lophanthoidesNepetoideae · Isodon Stable locus 55 No matrix
Isodon serraNepetoideae · Isodon Stable locus 55 No matrix
Lavandula angustifoliaNepetoideae · Lavandula Stable locus 55 No matrix
Leonurus cardiacaLamioideae · Leonurus Stable locus 55 No matrix
Melissa officinalisNepetoideae · Melissa Stable locus 55 No matrix
Mentha longifoliaNepetoideae · Mentha Stable locus 55 Available
Mentha spicataNepetoideae · Mentha Stable locus 55 No matrix
Mosla chinensisNepetoideae · Mosla Stable locus 55 No matrix
Perilla citriodoraNepetoideae · Perilla Stable locus 55 No matrix
Perilla frutescens var. hirtellaNepetoideae · Perilla Stable locus 55 No matrix
Rotheca myricoidesAjugoideae · Rotheca Stable locus 55 No matrix
Salvia miltiorrhizaNepetoideae · Salvia Stable locus 55 Available
Schizonepeta tenuifoliaNepetoideae · Schizonepeta Stable locus 55 No matrix
Tectona grandisTectonoideae · Tectona Stable locus 55 Available
Vitex agnus-castusViticoideae · Vitex Stable locus 55 No matrix
Clerodendrum bungeiAjugoideae · Clerodendrum Stable locus 44 No matrix
Mentha x piperitaNepetoideae · Mentha Stable locus 44 No matrix
Origanum majoranaNepetoideae · Origanum Stable locus 44 No matrix
Salvia officinalisNepetoideae · Salvia Stable locus 44 No matrix
Salvia sclareaNepetoideae · Salvia Stable locus 44 No matrix
Scutellaria barbataScutellarioideae · Scutellaria Stable locus 44 No matrix
Thymus quinquecostatusNepetoideae · Thymus Stable locus 44 No matrix
Westringia fruticosaProstantheroideae · Westringia Stable locus 44 No matrix
Cornutia pyramidataPremnoideae · Cornutia Stable locus 33 No matrix
Premna microphyllaPremnoideae · Premna Stable locus 33 No matrix

Candidate records

Traceable candidate identifiers

Filter and inspect candidate identifiers for this family.

Clear
Candidate IDSpeciesPathway / familyEvidenceConfidenceIdentityHMM score
LECA_c58964_g1_i1_len_655
Leonurus cardiacaSteroid / sterol · SQS_FDFT1blast Medium 69.8%—
LELE_c20386_g1_i1_len_595
Leonotis leonurusSteroid / sterol · SQS_FDFT1blast Medium 75.5%—
LELE_c61876_g1_i1_len_276
Leonotis leonurusSteroid / sterol · SQS_FDFT1blast Medium 74.7%—
LYAM_c18528_g1_i1_len_738
Lycopus americanusSteroid / sterol · SQS_FDFT1blast Medium 67.3%—
Ls5g06740.1
Leonurus sibiricusSteroid / sterol · SQS_FDFT1blast Medium 61.8%—
MAVU_c29713_g1_i5_len_1449
Marrubium vulgareSteroid / sterol · SQS_FDFT1blast Medium 50.0%—
MAVU_c7732_g2_i1_len_690
Marrubium vulgareSteroid / sterol · SQS_FDFT1blast Medium 72.3%—
MEOF_c6617_g1_i1_len_333
Melissa officinalisSteroid / sterol · SQS_FDFT1blast Medium 89.7%—
MODI_c28482_g1_i2_len_473
Monarda didymaSteroid / sterol · SQS_FDFT1blast Medium 82.9%—
MODI_c31335_g1_i1_len_609
Monarda didymaSteroid / sterol · SQS_FDFT1blast Medium 68.6%—
Ms_c081g00009.1
Mosla soochowensisSteroid / sterol · SQS_FDFT1blast Medium 30.5%—
ORMA_c3915_g1_i1_len_483
Origanum majoranaSteroid / sterol · SQS_FDFT1blast Medium 79.5%—
PEAT_c29717_g1_i2_len_830
Perovskia atriplicifoliaSteroid / sterol · SQS_FDFT1blast Medium 71.4%—
PEBA_c16236_g1_i1_len_451
Petraeovitex bambusetoriumSteroid / sterol · SQS_FDFT1blast Medium 66.7%—
PEBA_c28841_g1_i1_len_625
Petraeovitex bambusetoriumSteroid / sterol · SQS_FDFT1blast Medium 75.9%—
PEBA_c8287_g1_i1_len_255
Petraeovitex bambusetoriumSteroid / sterol · SQS_FDFT1blast Medium 84.7%—
PHFR_c100577_g1_i1_len_270
Phlomis fruticosaSteroid / sterol · SQS_FDFT1blast Medium 90.0%—
PHFR_c42693_g1_i1_len_323
Phlomis fruticosaSteroid / sterol · SQS_FDFT1blast Medium 70.3%—
PRLA_c65592_g1_i6_len_1267
Prostanthera lasianthosSteroid / sterol · SQS_FDFT1blast Medium 38.0%—
PRMI_c91493_g1_i1_len_717
Premna microphyllaSteroid / sterol · SQS_FDFT1blast Medium 73.9%—
ROMY_c47452_g1_i1_len_352
Rotheca myricoidesSteroid / sterol · SQS_FDFT1blast Medium 82.0%—
STOF_c126713_g1_i1_len_331
Stachys officinalisSteroid / sterol · SQS_FDFT1blast Medium 68.2%—
STOF_c148755_g1_i1_len_461
Stachys officinalisSteroid / sterol · SQS_FDFT1blast Medium 53.3%—
STOF_c74035_g1_i1_len_255
Stachys officinalisSteroid / sterol · SQS_FDFT1blast Medium 46.5%—
Stenogyne_calaminthoides__EVM_prediction_HiC_scaffold_46.391.mRNA1
Stenogyne calaminthoidesSteroid / sterol · SQS_FDFT1blast Medium 55.9%—
WEFR_c36710_g1_i1_len_866
Westringia fruticosaSteroid / sterol · SQS_FDFT1blast Medium 62.9%—
evm.model.Chr06.1093
Callicarpa nudifloraSteroid / sterol · SQS_FDFT1blast Medium 77.2%—
evm.model.Chr09.732
Callicarpa nudifloraSteroid / sterol · SQS_FDFT1blast Medium 35.9%—
evm.model.LG20.1346
Clinopodium barosmumSteroid / sterol · SQS_FDFT1blast Medium 57.1%—
THVU_c3382_g1_i1_len_812
Thymus vulgarisSteroid / sterol · SQS_FDFT1hmm Medium —20.1