LamiOmicsDB Lamiaceae Multi-Omics Database
v1 808 species · 3 phylogenies · 6,313 sequences

Pathway-family scientific record

GGPPS

Geranylgeranyl diphosphate synthase family

This module includes PlantSME enzyme-family assignments and traceable candidate protein identifiers from genome-derived or transcriptome-derived protein sets.

Browse candidatesCompare speciesCSV
Stable locus plantsmeTerpenoid biosynthesis
Public candidate IDs
227
Species with candidates
79
Species with assignments
79
Source assignments
227
Gene-tree candidates
0
Motif candidates
0

Evidence profile

Available evidence layers

◆Candidate identifiers227 public species-linked identifiers can be inspected.
GTGene-tree workflow0 comparable source candidates; 0 high-confidence source calls.
MMotif-screen proxy0 motif-screen candidates; 0 with all required motif proxies.
100 kbLocal clustering proxy0 clusters across 0 species; maximum cluster size 0.

Comparative signature

Lamiaceae comparison fields

Rate delta
-0.006 · lower in Lamiaceae
Prevalence delta
0
Comparable source
PlantSME family assignments
Comparable source count
227
Public candidate count
227
Evidence mode
plantsme

Species coverage

Assignment and locus coverage by species

Source family counts and public candidate identifiers are shown in separate columns.

SpeciesEvidence stateSource countCandidate IDsExpression
Pogostemon cablinLamioideae · Pogostemon Stable locus 1616 Available
Ocimum basilicumNepetoideae · Ocimum Stable locus 99 Available
Teucrium chamaedrysAjugoideae · Teucrium Stable locus 99 No matrix
Nepeta catariaNepetoideae · Nepeta Stable locus 77 Available
Salvia hispanicaNepetoideae · Salvia Stable locus 77 No matrix
Teucrium marumAjugoideae · Teucrium Stable locus 77 No matrix
Agastache rugosaNepetoideae · Agastache Stable locus 66 No matrix
Origanum vulgareNepetoideae · Origanum Stable locus 66 No matrix
Cornutia pyramidataPremnoideae · Cornutia Stable locus 55 No matrix
Holmskioldia sanguineaScutellarioideae · Holmskioldia Stable locus 55 No matrix
Nepeta mussiniiNepetoideae · Nepeta Stable locus 44 Available
Phlomoides rotataLamioideae · Phlomoides Stable locus 44 No matrix
Stachys officinalisLamioideae · Stachys Stable locus 44 No matrix
Stenogyne calaminthoidesLamioideae · Stenogyne Stable locus 44 No matrix
Clerodendrum bungeiAjugoideae · Clerodendrum Stable locus 33 No matrix
Elsholtzia splendensNepetoideae · Elsholtzia Stable locus 33 No matrix
Glechoma hederaceaNepetoideae · Glechoma Stable locus 33 No matrix
Hyptis suaveolensNepetoideae · Hyptis Stable locus 33 No matrix
Hyssopus officinalisNepetoideae · Hyssopus Stable locus 33 No matrix
Leonotis leonurusLamioideae · Leonotis Stable locus 33 No matrix
Leonurus cardiacaLamioideae · Leonurus Stable locus 33 No matrix
Leonurus japonicusLamioideae · Leonurus Stable locus 33 No matrix
Mosla soochowensisNepetoideae · Mosla Stable locus 33 No matrix
Perilla frutescensNepetoideae · Perilla Stable locus 33 No matrix
Plectranthus barbatusNepetoideae · Plectranthus Stable locus 33 No matrix
Rotheca myricoidesAjugoideae · Rotheca Stable locus 33 No matrix
Salvia miltiorrhizaNepetoideae · Salvia Stable locus 33 Available
Salvia rosmarinusNepetoideae · Salvia Stable locus 33 Available
Salvia splendensNepetoideae · Salvia Stable locus 33 No matrix
Schizonepeta tenuifoliaNepetoideae · Schizonepeta Stable locus 33 No matrix
Tectona grandisTectonoideae · Tectona Stable locus 33 Available
Thymus vulgarisNepetoideae · Thymus Stable locus 33 No matrix
Agastache foeniculumNepetoideae · Agastache Stable locus 22 No matrix
Ajuga reptansAjugoideae · Ajuga Stable locus 22 No matrix
Ballota pseudodictamnusLamioideae · Ballota Stable locus 22 No matrix
Callicarpa nudifloraCallicarpoideae · Callicarpa Stable locus 22 No matrix
Clinopodium gracileNepetoideae · Clinopodium Stable locus 22 No matrix
Collinsonia canadensisNepetoideae · Collinsonia Stable locus 22 No matrix
Dracocephalum rupestreNepetoideae · Dracocephalum Stable locus 22 No matrix
Gmelina philippensisPremnoideae · Gmelina Stable locus 22 No matrix
Lamium albumLamioideae · Lamium Stable locus 22 No matrix
Lavandula angustifoliaNepetoideae · Lavandula Stable locus 22 No matrix
Leonurus sibiricusLamioideae · Leonurus Stable locus 22 No matrix
Marmoritis complanataNepetoideae · Marmoritis Stable locus 22 No matrix
Marrubium vulgareLamioideae · Marrubium Stable locus 22 No matrix
Melissa officinalisNepetoideae · Melissa Stable locus 22 No matrix
Mentha spicataNepetoideae · Mentha Stable locus 22 No matrix
Mentha x piperitaNepetoideae · Mentha Stable locus 22 No matrix
Mosla chinensisNepetoideae · Mosla Stable locus 22 No matrix
Ocimum tenuiflorumNepetoideae · Ocimum Stable locus 22 No matrix
Perovskia atriplicifoliaNepetoideae · Perovskia Stable locus 22 No matrix
Petraeovitex bambusetoriumPeronematoideae · Petraeovitex Stable locus 22 No matrix
Phlomis fruticosaLamioideae · Phlomis Stable locus 22 No matrix
Premna microphyllaPremnoideae · Premna Stable locus 22 No matrix
Prostanthera lasianthosProstantheroideae · Prostanthera Stable locus 22 No matrix
Prunella vulgarisNepetoideae · Prunella Stable locus 22 No matrix
Salvia divinorumNepetoideae · Salvia Stable locus 22 No matrix
Salvia officinalisNepetoideae · Salvia Stable locus 22 No matrix
Salvia sclareaNepetoideae · Salvia Stable locus 22 No matrix
Scutellaria baicalensisScutellarioideae · Scutellaria Stable locus 22 No matrix
Scutellaria barbataScutellarioideae · Scutellaria Stable locus 22 No matrix
Teucrium canadenseAjugoideae · Teucrium Stable locus 22 No matrix
Thymus quinquecostatusNepetoideae · Thymus Stable locus 22 No matrix
Vitex agnus-castusViticoideae · Vitex Stable locus 22 No matrix
Westringia fruticosaProstantheroideae · Westringia Stable locus 22 No matrix
Ajuga decumbensAjugoideae · Ajuga Stable locus 11 No matrix
Callicarpa americanaCallicarpoideae · Callicarpa Stable locus 11 No matrix
Clinopodium barosmumNepetoideae · Clinopodium Stable locus 11 No matrix
Congea tomentosaSymphorematoideae · Congea Stable locus 11 No matrix
Drepanocaryum sewerzowiiNepetoideae · Drepanocaryum Stable locus 11 No matrix
Glechoma longitubaNepetoideae · Glechoma Stable locus 11 No matrix
Isodon lophanthoidesNepetoideae · Isodon Stable locus 11 No matrix
Isodon serraNepetoideae · Isodon Stable locus 11 No matrix
Lycopus americanusNepetoideae · Lycopus Stable locus 11 No matrix
Mentha longifoliaNepetoideae · Mentha Stable locus 11 Available
Origanum majoranaNepetoideae · Origanum Stable locus 11 No matrix
Perilla citriodoraNepetoideae · Perilla Stable locus 11 No matrix
Perilla frutescens var. hirtellaNepetoideae · Perilla Stable locus 11 No matrix
Salvia bowleyanaNepetoideae · Salvia Stable locus 11 No matrix

Candidate records

Traceable candidate identifiers

Filter and inspect candidate identifiers for this family.

Clear
Candidate IDSpeciesPathway / familyEvidenceConfidenceIdentityHMM score
evm.model.chr2.312
Prunella vulgarisTerpenoid · GGPPSblast+hmm High 63.7%151.2
AG34_scaffold1_10090T
Agastache rugosaTerpenoid · GGPPSblast+hmm High 54.7%69.0
Teucrium_chamaedrys__Tcha81937
Teucrium chamaedrysTerpenoid · GGPPSblast+hmm High 37.0%68.2
AG34_scaffold4_15250T
Agastache rugosaTerpenoid · GGPPSblast+hmm High 81.6%62.4
CLBU_c37131_g1_i1_len_929
Clerodendrum bungeiTerpenoid · GGPPSblast+hmm High 64.2%36.2
ROMY_c67831_g1_i3_len_809
Rotheca myricoidesTerpenoid · GGPPSblast+hmm High 67.2%31.1
Teucrium_chamaedrys__Tcha81938
Teucrium chamaedrysTerpenoid · GGPPSblast+hmm High 45.9%29.3
COPY_c77831_g2_i1_len_297
Cornutia pyramidataTerpenoid · GGPPSblast+hmm High 60.6%28.4
STOF_c82288_g1_i1_len_342
Stachys officinalisTerpenoid · GGPPSblast+hmm High 69.8%28.0
STOF_c122638_g1_i1_len_251
Stachys officinalisTerpenoid · GGPPSblast+hmm High 70.7%23.6
PLBA_c46490_g1_i2_len_1247
Plectranthus barbatusTerpenoid · GGPPSblast+hmm High 40.6%18.7
AG34_scaffold2_03770T
Agastache rugosaTerpenoid · GGPPSblast+hmm Medium 53.7%103.7
Ms_c021g00012.1
Mosla soochowensisTerpenoid · GGPPSblast+hmm Medium 25.3%63.3
COPY_c18843_g1_i2_len_1143
Cornutia pyramidataTerpenoid · GGPPSblast+hmm Medium 24.5%45.8
AG34_scaffold8_03910T
Agastache rugosaTerpenoid · GGPPSblast+hmm Medium 55.9%39.3
evm.model.Contig23.30
Callicarpa nudifloraTerpenoid · GGPPSblast+hmm Medium 26.1%28.5
Teum.12G007700.1
Teucrium marumTerpenoid · GGPPSblast+hmm Medium 50.0%15.1
HOSA_c16165_g1_i1_len_393
Holmskioldia sanguineaTerpenoid · GGPPSblast+hmm Medium 51.1%12.6
Teucrium_chamaedrys__Tcha68519
Teucrium chamaedrysTerpenoid · GGPPSblast+hmm Medium 30.3%11.7
THVU_c157127_g1_i1_len_646
Thymus vulgarisTerpenoid · GGPPSblast+hmm Medium 59.8%11.4
Teucrium_chamaedrys__Tcha68508
Teucrium chamaedrysTerpenoid · GGPPSblast+hmm Medium 31.0%11.3
LECA_c76692_g1_i1_len_586
Leonurus cardiacaTerpenoid · GGPPSblast+hmm Medium 49.3%6.9
31:ILLG4G310.180m1
Isodon lophanthoidesTerpenoid · GGPPSblast Medium 63.4%—
373.g196.t1
Ocimum basilicumTerpenoid · GGPPSblast Medium 32.9%—
373.g196.t1.1.5db15264
Ocimum basilicumTerpenoid · GGPPSblast Medium 32.9%—
375.g25.t1
Ocimum basilicumTerpenoid · GGPPSblast Medium 30.7%—
383786.g6.t1
Ocimum basilicumTerpenoid · GGPPSblast Medium 65.0%—
383786.g6.t1.1.5db1534c
Ocimum basilicumTerpenoid · GGPPSblast Medium 64.6%—
383786.g6.t1.2.5db1534c
Ocimum basilicumTerpenoid · GGPPSblast Medium 64.9%—
383786.g6.t1.3.5db1534c
Ocimum basilicumTerpenoid · GGPPSblast Medium 64.9%—
748.g57.t1
Ocimum basilicumTerpenoid · GGPPSblast Medium 64.4%—
748.g57.t1.1.5db15524
Ocimum basilicumTerpenoid · GGPPSblast Medium 64.7%—
AG34_scaffold5_08840T
Agastache rugosaTerpenoid · GGPPSblast Medium 30.6%—
AG34_scaffold8_13780T
Agastache rugosaTerpenoid · GGPPSblast Medium 67.5%—
AGFO_c16547_g1_i1_len_2167
Agastache foeniculumTerpenoid · GGPPSblast Medium 30.2%—
AGFO_c26403_g1_i1_len_2134
Agastache foeniculumTerpenoid · GGPPSblast Medium 67.1%—
AJRE_c34186_g1_i1_len_2678
Ajuga reptansTerpenoid · GGPPSblast Medium 33.2%—
AJRE_c41724_g1_i1_len_2194
Ajuga reptansTerpenoid · GGPPSblast Medium 67.4%—
BAPS_c35831_g1_i2_len_2221
Ballota pseudodictamnusTerpenoid · GGPPSblast Medium 31.1%—
BAPS_c38597_g1_i1_len_2309
Ballota pseudodictamnusTerpenoid · GGPPSblast Medium 65.3%—
CAame04G0001110.v1.94
Callicarpa americanaTerpenoid · GGPPSblast Medium 68.3%—
CLBU_c52521_g1_i1_len_2270
Clerodendrum bungeiTerpenoid · GGPPSblast Medium 65.7%—
CLBU_c52763_g1_i3_len_2689
Clerodendrum bungeiTerpenoid · GGPPSblast Medium 32.4%—
COCA_c49711_g1_i1_len_2150
Collinsonia canadensisTerpenoid · GGPPSblast Medium 31.7%—
COCA_c70073_g1_i1_len_2290
Collinsonia canadensisTerpenoid · GGPPSblast Medium 64.7%—
COPY_c50525_g2_i1_len_319
Cornutia pyramidataTerpenoid · GGPPSblast Medium 52.4%—
COPY_c68740_g1_i1_len_2314
Cornutia pyramidataTerpenoid · GGPPSblast Medium 65.8%—
COPY_c69018_g1_i1_len_1919
Cornutia pyramidataTerpenoid · GGPPSblast Medium 31.5%—
COTO_c40880_g1_i2_len_4102
Congea tomentosaTerpenoid · GGPPSblast Medium 67.7%—
Clgra_005262-T1
Clinopodium gracileTerpenoid · GGPPSblast Medium 65.5%—