LamiOmicsDB Lamiaceae Multi-Omics Database
v1 808 species · 3 phylogenies · 6,313 sequences

Pathway-family scientific record

HMGS

3-hydroxy-3-methylglutaryl-CoA synthase family

This module includes PlantSME enzyme-family assignments and traceable candidate protein identifiers from genome-derived or transcriptome-derived protein sets.

Browse candidatesCompare speciesCSV
Stable locus plantsmeTerpenoid biosynthesis
Public candidate IDs
138
Species with candidates
80
Species with assignments
80
Source assignments
138
Gene-tree candidates
0
Motif candidates
0

Evidence profile

Available evidence layers

◆Candidate identifiers138 public species-linked identifiers can be inspected.
GTGene-tree workflow0 comparable source candidates; 0 high-confidence source calls.
MMotif-screen proxy0 motif-screen candidates; 0 with all required motif proxies.
100 kbLocal clustering proxy0 clusters across 0 species; maximum cluster size 0.

Comparative signature

Lamiaceae comparison fields

Rate delta
Not calculated
Prevalence delta
Not calculated
Comparable source
PlantSME family assignments
Comparable source count
138
Public candidate count
138
Evidence mode
plantsme

Species coverage

Assignment and locus coverage by species

Source family counts and public candidate identifiers are shown in separate columns.

SpeciesEvidence stateSource countCandidate IDsExpression
Salvia splendensNepetoideae · Salvia Stable locus 66 No matrix
Premna microphyllaPremnoideae · Premna Stable locus 55 No matrix
Pogostemon cablinLamioideae · Pogostemon Stable locus 44 Available
Teucrium chamaedrysAjugoideae · Teucrium Stable locus 44 No matrix
Holmskioldia sanguineaScutellarioideae · Holmskioldia Stable locus 33 No matrix
Hyptis suaveolensNepetoideae · Hyptis Stable locus 33 No matrix
Hyssopus officinalisNepetoideae · Hyssopus Stable locus 33 No matrix
Lamium albumLamioideae · Lamium Stable locus 33 No matrix
Marmoritis complanataNepetoideae · Marmoritis Stable locus 33 No matrix
Ocimum basilicumNepetoideae · Ocimum Stable locus 33 Available
Petraeovitex bambusetoriumPeronematoideae · Petraeovitex Stable locus 33 No matrix
Rotheca myricoidesAjugoideae · Rotheca Stable locus 33 No matrix
Salvia rosmarinusNepetoideae · Salvia Stable locus 33 Available
Tectona grandisTectonoideae · Tectona Stable locus 33 Available
Teucrium marumAjugoideae · Teucrium Stable locus 33 No matrix
Ajuga decumbensAjugoideae · Ajuga Stable locus 22 No matrix
Callicarpa americanaCallicarpoideae · Callicarpa Stable locus 22 No matrix
Callicarpa nudifloraCallicarpoideae · Callicarpa Stable locus 22 No matrix
Clerodendrum bungeiAjugoideae · Clerodendrum Stable locus 22 No matrix
Clinopodium barosmumNepetoideae · Clinopodium Stable locus 22 No matrix
Cornutia pyramidataPremnoideae · Cornutia Stable locus 22 No matrix
Elsholtzia splendensNepetoideae · Elsholtzia Stable locus 22 No matrix
Glechoma longitubaNepetoideae · Glechoma Stable locus 22 No matrix
Gmelina philippensisPremnoideae · Gmelina Stable locus 22 No matrix
Lavandula angustifoliaNepetoideae · Lavandula Stable locus 22 No matrix
Leonurus cardiacaLamioideae · Leonurus Stable locus 22 No matrix
Mentha spicataNepetoideae · Mentha Stable locus 22 No matrix
Ocimum tenuiflorumNepetoideae · Ocimum Stable locus 22 No matrix
Origanum vulgareNepetoideae · Origanum Stable locus 22 No matrix
Perilla frutescensNepetoideae · Perilla Stable locus 22 No matrix
Prunella vulgarisNepetoideae · Prunella Stable locus 22 No matrix
Salvia divinorumNepetoideae · Salvia Stable locus 22 No matrix
Salvia hispanicaNepetoideae · Salvia Stable locus 22 No matrix
Scutellaria barbataScutellarioideae · Scutellaria Stable locus 22 No matrix
Stenogyne calaminthoidesLamioideae · Stenogyne Stable locus 22 No matrix
Vitex agnus-castusViticoideae · Vitex Stable locus 22 No matrix
Agastache foeniculumNepetoideae · Agastache Stable locus 11 No matrix
Agastache rugosaNepetoideae · Agastache Stable locus 11 No matrix
Ajuga reptansAjugoideae · Ajuga Stable locus 11 No matrix
Ballota pseudodictamnusLamioideae · Ballota Stable locus 11 No matrix
Clinopodium gracileNepetoideae · Clinopodium Stable locus 11 No matrix
Collinsonia canadensisNepetoideae · Collinsonia Stable locus 11 No matrix
Congea tomentosaSymphorematoideae · Congea Stable locus 11 No matrix
Dracocephalum rupestreNepetoideae · Dracocephalum Stable locus 11 No matrix
Drepanocaryum sewerzowiiNepetoideae · Drepanocaryum Stable locus 11 No matrix
Glechoma hederaceaNepetoideae · Glechoma Stable locus 11 No matrix
Isodon lophanthoidesNepetoideae · Isodon Stable locus 11 No matrix
Isodon serraNepetoideae · Isodon Stable locus 11 No matrix
Leonotis leonurusLamioideae · Leonotis Stable locus 11 No matrix
Leonurus japonicusLamioideae · Leonurus Stable locus 11 No matrix
Leonurus sibiricusLamioideae · Leonurus Stable locus 11 No matrix
Lycopus americanusNepetoideae · Lycopus Stable locus 11 No matrix
Marrubium vulgareLamioideae · Marrubium Stable locus 11 No matrix
Melissa officinalisNepetoideae · Melissa Stable locus 11 No matrix
Mentha longifoliaNepetoideae · Mentha Stable locus 11 Available
Mentha x piperitaNepetoideae · Mentha Stable locus 11 No matrix
Monarda didymaNepetoideae · Monarda Stable locus 11 No matrix
Mosla chinensisNepetoideae · Mosla Stable locus 11 No matrix
Mosla soochowensisNepetoideae · Mosla Stable locus 11 No matrix
Nepeta catariaNepetoideae · Nepeta Stable locus 11 Available
Nepeta mussiniiNepetoideae · Nepeta Stable locus 11 Available
Origanum majoranaNepetoideae · Origanum Stable locus 11 No matrix
Perilla citriodoraNepetoideae · Perilla Stable locus 11 No matrix
Perilla frutescens var. hirtellaNepetoideae · Perilla Stable locus 11 No matrix
Perovskia atriplicifoliaNepetoideae · Perovskia Stable locus 11 No matrix
Phlomis fruticosaLamioideae · Phlomis Stable locus 11 No matrix
Phlomoides rotataLamioideae · Phlomoides Stable locus 11 No matrix
Plectranthus barbatusNepetoideae · Plectranthus Stable locus 11 No matrix
Prostanthera lasianthosProstantheroideae · Prostanthera Stable locus 11 No matrix
Salvia bowleyanaNepetoideae · Salvia Stable locus 11 No matrix
Salvia miltiorrhizaNepetoideae · Salvia Stable locus 11 Available
Salvia officinalisNepetoideae · Salvia Stable locus 11 No matrix
Salvia sclareaNepetoideae · Salvia Stable locus 11 No matrix
Schizonepeta tenuifoliaNepetoideae · Schizonepeta Stable locus 11 No matrix
Scutellaria baicalensisScutellarioideae · Scutellaria Stable locus 11 No matrix
Stachys officinalisLamioideae · Stachys Stable locus 11 No matrix
Teucrium canadenseAjugoideae · Teucrium Stable locus 11 No matrix
Thymus quinquecostatusNepetoideae · Thymus Stable locus 11 No matrix
Thymus vulgarisNepetoideae · Thymus Stable locus 11 No matrix
Westringia fruticosaProstantheroideae · Westringia Stable locus 11 No matrix

Candidate records

Traceable candidate identifiers

Filter and inspect candidate identifiers for this family.

Clear
Candidate IDSpeciesPathway / familyEvidenceConfidenceIdentityHMM score
GMPH_c36847_g1_i1_len_1846
Gmelina philippensisTerpenoid · HMGSblast+hmm High 89.3%264.3
VIAG_c39061_g1_i1_len_1929
Vitex agnus-castusTerpenoid · HMGSblast+hmm High 89.7%263.5
tectona_grandis_TgUn046g00030.t1
Tectona grandisTerpenoid · HMGSblast+hmm High 88.9%263.0
CAame10G0028670.v1.94
Callicarpa americanaTerpenoid · HMGSblast+hmm High 89.3%262.7
PRLA_c69695_g1_i1_len_1900
Prostanthera lasianthosTerpenoid · HMGSblast+hmm High 88.2%262.7
1787.g1.t1
Ocimum basilicumTerpenoid · HMGSblast+hmm High 87.8%262.2
1787.g4.t1
Ocimum basilicumTerpenoid · HMGSblast+hmm High 87.6%262.2
WEFR_c40406_g1_i2_len_1866
Westringia fruticosaTerpenoid · HMGSblast+hmm High 87.6%262.2
PRMI_c47912_g1_i1_len_1835
Premna microphyllaTerpenoid · HMGSblast+hmm High 89.3%262.1
Pat_A02G062000.m1
Pogostemon cablinTerpenoid · HMGSblast+hmm High 88.2%262.0
Pat_B02G039300.m1
Pogostemon cablinTerpenoid · HMGSblast+hmm High 88.0%262.0
CAame03G0022110.v1.94
Callicarpa americanaTerpenoid · HMGSblast+hmm High 88.1%261.9
evm.model.Chr09.640
Callicarpa nudifloraTerpenoid · HMGSblast+hmm High 88.4%261.9
Mc5g31850.1
Mosla chinensisTerpenoid · HMGSblast+hmm High 88.2%261.7
Ms_c006g00563.1
Mosla soochowensisTerpenoid · HMGSblast+hmm High 88.2%261.7
rna-gnl|WGS:QFCC|chr01_42529428_42533307.mrna1
Perilla frutescensTerpenoid · HMGSblast+hmm High 88.4%261.7
Roff11240092920
Salvia rosmarinusTerpenoid · HMGSblast+hmm High 87.1%261.4
Roff3890890457180
Salvia rosmarinusTerpenoid · HMGSblast+hmm High 88.6%261.4
Smil00G0017460.1.v1.484
Salvia miltiorrhizaTerpenoid · HMGSblast+hmm High 88.9%261.4
PLBA_c42850_g1_i2_len_1785
Plectranthus barbatusTerpenoid · HMGSblast+hmm High 87.3%261.3
MEOF_c23064_g1_i1_len_1875
Melissa officinalisTerpenoid · HMGSblast+hmm High 88.9%261.2
19:ILLG3G26.189m1
Isodon lophanthoidesTerpenoid · HMGSblast+hmm High 86.7%261.1
PEAT_c36287_g1_i1_len_1885
Perovskia atriplicifoliaTerpenoid · HMGSblast+hmm High 89.3%261.1
Pat_A01G087200.m1
Pogostemon cablinTerpenoid · HMGSblast+hmm High 87.8%261.1
XP_047948283.1
Salvia hispanicaTerpenoid · HMGSblast+hmm High 88.4%261.1
evm.model.ptg000002l.1887
Isodon serraTerpenoid · HMGSblast+hmm High 86.7%261.1
g4840.t1
Salvia sclareaTerpenoid · HMGSblast+hmm High 88.9%261.1
1617.g1.t1
Ocimum basilicumTerpenoid · HMGSblast+hmm High 87.1%261.0
Teum.10G011280.2
Teucrium marumTerpenoid · HMGSblast+hmm High 89.9%261.0
COCA_c68926_g1_i1_len_2022
Collinsonia canadensisTerpenoid · HMGSblast+hmm High 88.2%260.9
tectona_grandis_Tg16g06150.t1
Tectona grandisTerpenoid · HMGSblast+hmm High 86.6%260.9
SAOF_c29124_g1_i1_len_1851
Salvia officinalisTerpenoid · HMGSblast+hmm High 88.7%260.8
g28461.t1
Ajuga decumbensTerpenoid · HMGSblast+hmm High 88.0%260.8
g28486.t1
Ajuga decumbensTerpenoid · HMGSblast+hmm High 88.2%260.8
HYSU_c32804_g1_i2_len_1905
Hyptis suaveolensTerpenoid · HMGSblast+hmm High 87.3%260.7
LELE_c36689_g1_i1_len_2078
Leonotis leonurusTerpenoid · HMGSblast+hmm High 88.4%260.6
LYAM_c7107_g1_i1_len_1736
Lycopus americanusTerpenoid · HMGSblast+hmm High 89.3%260.6
Sch000025887
Schizonepeta tenuifoliaTerpenoid · HMGSblast+hmm High 88.4%260.6
ocimum_sanctum_Ote100042210021
Ocimum tenuiflorumTerpenoid · HMGSblast+hmm High 81.4%260.6
CLBU_c51265_g1_i2_len_1905
Clerodendrum bungeiTerpenoid · HMGSblast+hmm High 87.6%260.5
KAL1559787.1
Salvia divinorumTerpenoid · HMGSblast+hmm High 87.6%260.5
Stenogyne_calaminthoides__EVM_prediction_HiC_scaffold_25.624.mRNA1
Stenogyne calaminthoidesTerpenoid · HMGSblast+hmm High 82.5%260.5
Stenogyne_calaminthoides__EVM_prediction_HiC_scaffold_40.1236.mRNA1
Stenogyne calaminthoidesTerpenoid · HMGSblast+hmm High 86.9%260.4
evm.model.chr6.527
Prunella vulgarisTerpenoid · HMGSblast+hmm High 88.9%260.4
AGFO_c72338_g1_i1_len_1904
Agastache foeniculumTerpenoid · HMGSblast+hmm High 88.2%260.3
GLHE_c63132_g2_i1_len_1883
Glechoma hederaceaTerpenoid · HMGSblast+hmm High 88.2%260.3
STOF_c65690_g4_i1_len_1857
Stachys officinalisTerpenoid · HMGSblast+hmm High 88.0%260.3
evm.model.Chr05.435
Callicarpa nudifloraTerpenoid · HMGSblast+hmm High 88.6%260.3
evm.model.chr2.1991
Prunella vulgarisTerpenoid · HMGSblast+hmm High 88.2%260.3
g34586.t1
Hyssopus officinalisTerpenoid · HMGSblast+hmm High 88.0%260.3