LamiOmicsDB Lamiaceae Multi-Omics Database
v1 808 species · 3 phylogenies · 6,313 sequences

Pathway-family scientific record

IDI

Isopentenyl-diphosphate isomerase family

This module includes PlantSME enzyme-family assignments and traceable candidate protein identifiers from genome-derived or transcriptome-derived protein sets.

Browse candidatesCompare speciesCSV
Stable locus plantsmeTerpenoid biosynthesis
Public candidate IDs
2,633
Species with candidates
80
Species with assignments
80
Source assignments
3,073
Gene-tree candidates
0
Motif candidates
0

Evidence profile

Available evidence layers

◆Candidate identifiers2,633 public species-linked identifiers can be inspected.
GTGene-tree workflow0 comparable source candidates; 0 high-confidence source calls.
MMotif-screen proxy0 motif-screen candidates; 0 with all required motif proxies.
100 kbLocal clustering proxy0 clusters across 0 species; maximum cluster size 0.

Comparative signature

Lamiaceae comparison fields

Rate delta
Not calculated
Prevalence delta
Not calculated
Comparable source
PlantSME family assignments
Comparable source count
3,073
Public candidate count
2,633
Evidence mode
plantsme

Species coverage

Assignment and locus coverage by species

Source family counts and public candidate identifiers are shown in separate columns.

SpeciesEvidence stateSource countCandidate IDsExpression
Pogostemon cablinLamioideae · Pogostemon Stable locus 15650 Available
Teucrium chamaedrysAjugoideae · Teucrium Stable locus 11450 No matrix
Teucrium marumAjugoideae · Teucrium Stable locus 11350 No matrix
Ocimum basilicumNepetoideae · Ocimum Stable locus 10050 Available
Nepeta catariaNepetoideae · Nepeta Stable locus 9650 Available
Callicarpa americanaCallicarpoideae · Callicarpa Stable locus 8650 No matrix
Elsholtzia splendensNepetoideae · Elsholtzia Stable locus 8150 No matrix
Salvia splendensNepetoideae · Salvia Stable locus 6950 No matrix
Hyssopus officinalisNepetoideae · Hyssopus Stable locus 6450 No matrix
Salvia rosmarinusNepetoideae · Salvia Stable locus 6150 Available
Stenogyne calaminthoidesLamioideae · Stenogyne Stable locus 5050 No matrix
Clinopodium barosmumNepetoideae · Clinopodium Stable locus 4949 No matrix
Perilla frutescensNepetoideae · Perilla Stable locus 4949 No matrix
Nepeta mussiniiNepetoideae · Nepeta Stable locus 4848 Available
Phlomoides rotataLamioideae · Phlomoides Stable locus 4646 No matrix
Origanum vulgareNepetoideae · Origanum Stable locus 4545 No matrix
Salvia hispanicaNepetoideae · Salvia Stable locus 4545 No matrix
Prunella vulgarisNepetoideae · Prunella Stable locus 4444 No matrix
Ajuga decumbensAjugoideae · Ajuga Stable locus 3838 No matrix
Ocimum tenuiflorumNepetoideae · Ocimum Stable locus 3838 No matrix
Salvia divinorumNepetoideae · Salvia Stable locus 3737 No matrix
Marmoritis complanataNepetoideae · Marmoritis Stable locus 3535 No matrix
Prostanthera lasianthosProstantheroideae · Prostanthera Stable locus 3535 No matrix
Thymus vulgarisNepetoideae · Thymus Stable locus 3535 No matrix
Dracocephalum rupestreNepetoideae · Dracocephalum Stable locus 3434 No matrix
Tectona grandisTectonoideae · Tectona Stable locus 3434 Available
Callicarpa nudifloraCallicarpoideae · Callicarpa Stable locus 3333 No matrix
Drepanocaryum sewerzowiiNepetoideae · Drepanocaryum Stable locus 3333 No matrix
Mosla soochowensisNepetoideae · Mosla Stable locus 3232 No matrix
Westringia fruticosaProstantheroideae · Westringia Stable locus 3232 No matrix
Glechoma longitubaNepetoideae · Glechoma Stable locus 3131 No matrix
Mosla chinensisNepetoideae · Mosla Stable locus 3131 No matrix
Salvia miltiorrhizaNepetoideae · Salvia Stable locus 3131 Available
Isodon serraNepetoideae · Isodon Stable locus 3030 No matrix
Melissa officinalisNepetoideae · Melissa Stable locus 3030 No matrix
Plectranthus barbatusNepetoideae · Plectranthus Stable locus 3030 No matrix
Premna microphyllaPremnoideae · Premna Stable locus 3030 No matrix
Scutellaria barbataScutellarioideae · Scutellaria Stable locus 3030 No matrix
Thymus quinquecostatusNepetoideae · Thymus Stable locus 3030 No matrix
Cornutia pyramidataPremnoideae · Cornutia Stable locus 2929 No matrix
Origanum majoranaNepetoideae · Origanum Stable locus 2929 No matrix
Rotheca myricoidesAjugoideae · Rotheca Stable locus 2929 No matrix
Ballota pseudodictamnusLamioideae · Ballota Stable locus 2828 No matrix
Clerodendrum bungeiAjugoideae · Clerodendrum Stable locus 2828 No matrix
Hyptis suaveolensNepetoideae · Hyptis Stable locus 2828 No matrix
Lamium albumLamioideae · Lamium Stable locus 2828 No matrix
Mentha spicataNepetoideae · Mentha Stable locus 2828 No matrix
Monarda didymaNepetoideae · Monarda Stable locus 2828 No matrix
Schizonepeta tenuifoliaNepetoideae · Schizonepeta Stable locus 2828 No matrix
Agastache foeniculumNepetoideae · Agastache Stable locus 2727 No matrix
Agastache rugosaNepetoideae · Agastache Stable locus 2727 No matrix
Clinopodium gracileNepetoideae · Clinopodium Stable locus 2727 No matrix
Collinsonia canadensisNepetoideae · Collinsonia Stable locus 2727 No matrix
Isodon lophanthoidesNepetoideae · Isodon Stable locus 2727 No matrix
Leonurus japonicusLamioideae · Leonurus Stable locus 2727 No matrix
Lycopus americanusNepetoideae · Lycopus Stable locus 2727 No matrix
Mentha x piperitaNepetoideae · Mentha Stable locus 2727 No matrix
Perilla citriodoraNepetoideae · Perilla Stable locus 2727 No matrix
Perilla frutescens var. hirtellaNepetoideae · Perilla Stable locus 2727 No matrix
Salvia officinalisNepetoideae · Salvia Stable locus 2727 No matrix
Perovskia atriplicifoliaNepetoideae · Perovskia Stable locus 2626 No matrix
Salvia bowleyanaNepetoideae · Salvia Stable locus 2626 No matrix
Scutellaria baicalensisScutellarioideae · Scutellaria Stable locus 2626 No matrix
Stachys officinalisLamioideae · Stachys Stable locus 2626 No matrix
Glechoma hederaceaNepetoideae · Glechoma Stable locus 2525 No matrix
Gmelina philippensisPremnoideae · Gmelina Stable locus 2525 No matrix
Holmskioldia sanguineaScutellarioideae · Holmskioldia Stable locus 2525 No matrix
Lavandula angustifoliaNepetoideae · Lavandula Stable locus 2525 No matrix
Leonurus sibiricusLamioideae · Leonurus Stable locus 2525 No matrix
Phlomis fruticosaLamioideae · Phlomis Stable locus 2525 No matrix
Vitex agnus-castusViticoideae · Vitex Stable locus 2525 No matrix
Ajuga reptansAjugoideae · Ajuga Stable locus 2424 No matrix
Congea tomentosaSymphorematoideae · Congea Stable locus 2424 No matrix
Leonotis leonurusLamioideae · Leonotis Stable locus 2424 No matrix
Petraeovitex bambusetoriumPeronematoideae · Petraeovitex Stable locus 2424 No matrix
Salvia sclareaNepetoideae · Salvia Stable locus 2424 No matrix
Marrubium vulgareLamioideae · Marrubium Stable locus 2323 No matrix
Teucrium canadenseAjugoideae · Teucrium Stable locus 2323 No matrix
Leonurus cardiacaLamioideae · Leonurus Stable locus 2222 No matrix
Mentha longifoliaNepetoideae · Mentha Stable locus 2121 Available

Candidate records

Traceable candidate identifiers

Filter and inspect candidate identifiers for this family.

Clear
Candidate IDSpeciesPathway / familyEvidenceConfidenceIdentityHMM score
DRSE_g727.t1
Drepanocaryum sewerzowiiTerpenoid · IDIblast+hmm High 63.1%23.2
COCA_c70322_g3_i3_len_2771
Collinsonia canadensisTerpenoid · IDIblast+hmm High 61.6%23.0
MACO_g5465.t1
Marmoritis complanataTerpenoid · IDIblast+hmm High 63.1%23.0
MACO_g5465.t2
Marmoritis complanataTerpenoid · IDIblast+hmm High 63.1%23.0
g11433.t1.4.5b43bdc4
Hyssopus officinalisTerpenoid · IDIblast+hmm High 63.8%22.9
g11433.t1.7.5b43bdc4
Hyssopus officinalisTerpenoid · IDIblast+hmm High 63.8%22.9
g11433.t1.2.5b43bdc4
Hyssopus officinalisTerpenoid · IDIblast+hmm High 62.9%22.8
g11433.t1.5.5b43bdc4
Hyssopus officinalisTerpenoid · IDIblast+hmm High 62.9%22.8
g11433.t1
Hyssopus officinalisTerpenoid · IDIblast+hmm High 62.4%22.7
g11433.t1.1.5b43bdc4
Hyssopus officinalisTerpenoid · IDIblast+hmm High 62.4%22.7
g11433.t1.3.5b43bdc4
Hyssopus officinalisTerpenoid · IDIblast+hmm High 62.4%22.7
g11433.t1.6.5b43bdc4
Hyssopus officinalisTerpenoid · IDIblast+hmm High 62.4%22.7
g11433.t1.8.5b43bdc4
Hyssopus officinalisTerpenoid · IDIblast+hmm High 62.9%22.7
g713.t1
Salvia sclareaTerpenoid · IDIblast+hmm High 63.2%22.6
scutellaria_barbata_GWHPAOTP012547
Scutellaria barbataTerpenoid · IDIblast+hmm High 60.0%22.6
ORMA_c30428_g1_i2_len_2767
Origanum majoranaTerpenoid · IDIblast+hmm High 63.1%22.5
evm.model.chr5.1621
Prunella vulgarisTerpenoid · IDIblast+hmm High 62.0%22.5
g21062.t1
Nepeta mussiniiTerpenoid · IDIblast+hmm High 57.8%22.5
Dru_2G0008430.1
Dracocephalum rupestreTerpenoid · IDIblast+hmm High 62.8%22.4
rna-gnl|WGS:QIYW|chr02_07783746_07790462.mrna1
Perilla citriodoraTerpenoid · IDIblast+hmm High 57.6%22.4
rna-gnl|WGS:QIYW|chr02_07783746_07790462.mrna1
Perilla frutescens var. hirtellaTerpenoid · IDIblast+hmm High 57.6%22.4
PEAT_c40550_g1_i3_len_3101
Perovskia atriplicifoliaTerpenoid · IDIblast+hmm High 63.2%22.3
Smil05G0027720.1.v1.484
Salvia miltiorrhizaTerpenoid · IDIblast+hmm High 62.6%22.3
evm.model.Chr09.331
Callicarpa nudifloraTerpenoid · IDIblast+hmm High 58.8%22.3
KAL1556924.1
Salvia divinorumTerpenoid · IDIblast+hmm High 58.1%22.2
evm.model.ptg000005l.1147
Isodon serraTerpenoid · IDIblast+hmm High 60.8%22.2
KAL1556922.1
Salvia divinorumTerpenoid · IDIblast+hmm High 61.6%22.1
KAL1556923.1
Salvia divinorumTerpenoid · IDIblast+hmm High 62.5%22.0
KAL1556925.1
Salvia divinorumTerpenoid · IDIblast+hmm High 62.2%22.0
THVU_c70838_g1_i1_len_2622
Thymus vulgarisTerpenoid · IDIblast+hmm High 62.6%21.9
STOF_c10830_g1_i1_len_2724
Stachys officinalisTerpenoid · IDIblast+hmm High 63.6%21.8
Roff18940244950
Salvia rosmarinusTerpenoid · IDIblast+hmm High 62.2%21.5
tectona_grandis_Tg16g03010.t1
Tectona grandisTerpenoid · IDIblast+hmm High 61.4%21.4
origanum_vulgare_1156.g24.t1
Origanum vulgareTerpenoid · IDIblast+hmm High 60.8%21.0
Sch000014375
Schizonepeta tenuifoliaTerpenoid · IDIblast+hmm High 57.1%20.8
GWHPBJVA017490
Thymus quinquecostatusTerpenoid · IDIblast+hmm High 63.2%20.7
evm.model.chr1.1724
Prunella vulgarisTerpenoid · IDIblast+hmm High 61.9%20.4
Stenogyne_calaminthoides__EVM_prediction_HiC_scaffold_26.3201.mRNA1
Stenogyne calaminthoidesTerpenoid · IDIblast+hmm High 62.2%20.0
Teum.09G006770.1
Teucrium marumTerpenoid · IDIblast+hmm High 73.7%20.0
Teum.09G006770.2
Teucrium marumTerpenoid · IDIblast+hmm High 73.7%20.0
Teum.09G006770.3
Teucrium marumTerpenoid · IDIblast+hmm High 73.7%20.0
AG34_scaffold2_07100T
Agastache rugosaTerpenoid · IDIblast+hmm High 62.5%19.9
AGFO_c27361_g1_i2_len_2772
Agastache foeniculumTerpenoid · IDIblast+hmm High 62.5%19.9
Lj3g27310.1
Leonurus japonicusTerpenoid · IDIblast+hmm High 63.6%19.9
Ls4g06740.1
Leonurus sibiricusTerpenoid · IDIblast+hmm High 63.3%19.9
MEPI_c64259_g1_i2_len_987
Mentha x piperitaTerpenoid · IDIblast+hmm High 60.2%19.8
Pat_B03G261800.m1
Pogostemon cablinTerpenoid · IDIblast+hmm High 60.2%19.7
GlLon_009383-T1
Glechoma longitubaTerpenoid · IDIblast+hmm High 59.3%19.3
Stenogyne_calaminthoides__EVM_prediction_HiC_scaffold_26.3193.mRNA1
Stenogyne calaminthoidesTerpenoid · IDIblast+hmm High 61.9%19.3
WEFR_c36771_g2_i1_len_2746
Westringia fruticosaTerpenoid · IDIblast+hmm High 62.9%19.2