LamiOmicsDB Lamiaceae Multi-Omics Database
v1 808 species · 3 phylogenies · 6,313 sequences

Pathway-family scientific record

IDI

Isopentenyl-diphosphate isomerase family

This module includes PlantSME enzyme-family assignments and traceable candidate protein identifiers from genome-derived or transcriptome-derived protein sets.

Browse candidatesCompare speciesCSV
Stable locus plantsmeTerpenoid biosynthesis
Public candidate IDs
2,633
Species with candidates
80
Species with assignments
80
Source assignments
3,073
Gene-tree candidates
0
Motif candidates
0

Evidence profile

Available evidence layers

◆Candidate identifiers2,633 public species-linked identifiers can be inspected.
GTGene-tree workflow0 comparable source candidates; 0 high-confidence source calls.
MMotif-screen proxy0 motif-screen candidates; 0 with all required motif proxies.
100 kbLocal clustering proxy0 clusters across 0 species; maximum cluster size 0.

Comparative signature

Lamiaceae comparison fields

Rate delta
Not calculated
Prevalence delta
Not calculated
Comparable source
PlantSME family assignments
Comparable source count
3,073
Public candidate count
2,633
Evidence mode
plantsme

Species coverage

Assignment and locus coverage by species

Source family counts and public candidate identifiers are shown in separate columns.

SpeciesEvidence stateSource countCandidate IDsExpression
Pogostemon cablinLamioideae · Pogostemon Stable locus 15650 Available
Teucrium chamaedrysAjugoideae · Teucrium Stable locus 11450 No matrix
Teucrium marumAjugoideae · Teucrium Stable locus 11350 No matrix
Ocimum basilicumNepetoideae · Ocimum Stable locus 10050 Available
Nepeta catariaNepetoideae · Nepeta Stable locus 9650 Available
Callicarpa americanaCallicarpoideae · Callicarpa Stable locus 8650 No matrix
Elsholtzia splendensNepetoideae · Elsholtzia Stable locus 8150 No matrix
Salvia splendensNepetoideae · Salvia Stable locus 6950 No matrix
Hyssopus officinalisNepetoideae · Hyssopus Stable locus 6450 No matrix
Salvia rosmarinusNepetoideae · Salvia Stable locus 6150 Available
Stenogyne calaminthoidesLamioideae · Stenogyne Stable locus 5050 No matrix
Clinopodium barosmumNepetoideae · Clinopodium Stable locus 4949 No matrix
Perilla frutescensNepetoideae · Perilla Stable locus 4949 No matrix
Nepeta mussiniiNepetoideae · Nepeta Stable locus 4848 Available
Phlomoides rotataLamioideae · Phlomoides Stable locus 4646 No matrix
Origanum vulgareNepetoideae · Origanum Stable locus 4545 No matrix
Salvia hispanicaNepetoideae · Salvia Stable locus 4545 No matrix
Prunella vulgarisNepetoideae · Prunella Stable locus 4444 No matrix
Ajuga decumbensAjugoideae · Ajuga Stable locus 3838 No matrix
Ocimum tenuiflorumNepetoideae · Ocimum Stable locus 3838 No matrix
Salvia divinorumNepetoideae · Salvia Stable locus 3737 No matrix
Marmoritis complanataNepetoideae · Marmoritis Stable locus 3535 No matrix
Prostanthera lasianthosProstantheroideae · Prostanthera Stable locus 3535 No matrix
Thymus vulgarisNepetoideae · Thymus Stable locus 3535 No matrix
Dracocephalum rupestreNepetoideae · Dracocephalum Stable locus 3434 No matrix
Tectona grandisTectonoideae · Tectona Stable locus 3434 Available
Callicarpa nudifloraCallicarpoideae · Callicarpa Stable locus 3333 No matrix
Drepanocaryum sewerzowiiNepetoideae · Drepanocaryum Stable locus 3333 No matrix
Mosla soochowensisNepetoideae · Mosla Stable locus 3232 No matrix
Westringia fruticosaProstantheroideae · Westringia Stable locus 3232 No matrix
Glechoma longitubaNepetoideae · Glechoma Stable locus 3131 No matrix
Mosla chinensisNepetoideae · Mosla Stable locus 3131 No matrix
Salvia miltiorrhizaNepetoideae · Salvia Stable locus 3131 Available
Isodon serraNepetoideae · Isodon Stable locus 3030 No matrix
Melissa officinalisNepetoideae · Melissa Stable locus 3030 No matrix
Plectranthus barbatusNepetoideae · Plectranthus Stable locus 3030 No matrix
Premna microphyllaPremnoideae · Premna Stable locus 3030 No matrix
Scutellaria barbataScutellarioideae · Scutellaria Stable locus 3030 No matrix
Thymus quinquecostatusNepetoideae · Thymus Stable locus 3030 No matrix
Cornutia pyramidataPremnoideae · Cornutia Stable locus 2929 No matrix
Origanum majoranaNepetoideae · Origanum Stable locus 2929 No matrix
Rotheca myricoidesAjugoideae · Rotheca Stable locus 2929 No matrix
Ballota pseudodictamnusLamioideae · Ballota Stable locus 2828 No matrix
Clerodendrum bungeiAjugoideae · Clerodendrum Stable locus 2828 No matrix
Hyptis suaveolensNepetoideae · Hyptis Stable locus 2828 No matrix
Lamium albumLamioideae · Lamium Stable locus 2828 No matrix
Mentha spicataNepetoideae · Mentha Stable locus 2828 No matrix
Monarda didymaNepetoideae · Monarda Stable locus 2828 No matrix
Schizonepeta tenuifoliaNepetoideae · Schizonepeta Stable locus 2828 No matrix
Agastache foeniculumNepetoideae · Agastache Stable locus 2727 No matrix
Agastache rugosaNepetoideae · Agastache Stable locus 2727 No matrix
Clinopodium gracileNepetoideae · Clinopodium Stable locus 2727 No matrix
Collinsonia canadensisNepetoideae · Collinsonia Stable locus 2727 No matrix
Isodon lophanthoidesNepetoideae · Isodon Stable locus 2727 No matrix
Leonurus japonicusLamioideae · Leonurus Stable locus 2727 No matrix
Lycopus americanusNepetoideae · Lycopus Stable locus 2727 No matrix
Mentha x piperitaNepetoideae · Mentha Stable locus 2727 No matrix
Perilla citriodoraNepetoideae · Perilla Stable locus 2727 No matrix
Perilla frutescens var. hirtellaNepetoideae · Perilla Stable locus 2727 No matrix
Salvia officinalisNepetoideae · Salvia Stable locus 2727 No matrix
Perovskia atriplicifoliaNepetoideae · Perovskia Stable locus 2626 No matrix
Salvia bowleyanaNepetoideae · Salvia Stable locus 2626 No matrix
Scutellaria baicalensisScutellarioideae · Scutellaria Stable locus 2626 No matrix
Stachys officinalisLamioideae · Stachys Stable locus 2626 No matrix
Glechoma hederaceaNepetoideae · Glechoma Stable locus 2525 No matrix
Gmelina philippensisPremnoideae · Gmelina Stable locus 2525 No matrix
Holmskioldia sanguineaScutellarioideae · Holmskioldia Stable locus 2525 No matrix
Lavandula angustifoliaNepetoideae · Lavandula Stable locus 2525 No matrix
Leonurus sibiricusLamioideae · Leonurus Stable locus 2525 No matrix
Phlomis fruticosaLamioideae · Phlomis Stable locus 2525 No matrix
Vitex agnus-castusViticoideae · Vitex Stable locus 2525 No matrix
Ajuga reptansAjugoideae · Ajuga Stable locus 2424 No matrix
Congea tomentosaSymphorematoideae · Congea Stable locus 2424 No matrix
Leonotis leonurusLamioideae · Leonotis Stable locus 2424 No matrix
Petraeovitex bambusetoriumPeronematoideae · Petraeovitex Stable locus 2424 No matrix
Salvia sclareaNepetoideae · Salvia Stable locus 2424 No matrix
Marrubium vulgareLamioideae · Marrubium Stable locus 2323 No matrix
Teucrium canadenseAjugoideae · Teucrium Stable locus 2323 No matrix
Leonurus cardiacaLamioideae · Leonurus Stable locus 2222 No matrix
Mentha longifoliaNepetoideae · Mentha Stable locus 2121 Available

Candidate records

Traceable candidate identifiers

Filter and inspect candidate identifiers for this family.

Clear
Candidate IDSpeciesPathway / familyEvidenceConfidenceIdentityHMM score
Mc1g16800.1
Mosla chinensisTerpenoid · IDIblast+hmm High 61.9%19.0
Ms_c007g04514.1
Mosla soochowensisTerpenoid · IDIblast+hmm High 62.0%18.5
GLHE_c67106_g1_i3_len_2490
Glechoma hederaceaTerpenoid · IDIblast+hmm High 62.6%18.4
evm.model.LG07.311
Clinopodium barosmumTerpenoid · IDIblast+hmm High 62.9%18.0
Clgra_001302-T1
Clinopodium gracileTerpenoid · IDIblast+hmm High 63.6%17.7
MEOF_c24284_g1_i1_len_601
Melissa officinalisTerpenoid · IDIblast+hmm High 73.5%17.3
MODI_c42861_g1_i3_len_3657
Monarda didymaTerpenoid · IDIblast+hmm High 62.6%17.3
384929.g31.t1
Ocimum basilicumTerpenoid · IDIblast+hmm High 62.5%17.1
MESP_c45503_g1_i2_len_2808
Mentha spicataTerpenoid · IDIblast+hmm High 62.8%16.5
Mlonscaffold_3_length_454607550087230.1.v1.326
Mentha longifoliaTerpenoid · IDIblast+hmm High 62.5%16.5
SAOF_c34826_g2_i3_len_2585
Salvia officinalisTerpenoid · IDIblast+hmm Medium 84.6%414.9
Teum.07G019040.5
Teucrium marumTerpenoid · IDIblast+hmm Medium 79.3%156.4
WEFR_c12008_g1_i1_len_431
Westringia fruticosaTerpenoid · IDIblast+hmm Medium 90.0%81.1
PRMI_c112412_g1_i1_len_469
Premna microphyllaTerpenoid · IDIblast+hmm Medium 90.0%73.2
Stenogyne_calaminthoides__EVM_prediction_HiC_scaffold_8.1453.mRNA1
Stenogyne calaminthoidesTerpenoid · IDIblast+hmm Medium 80.5%59.6
KAL8512676.1
Phlomoides rotataTerpenoid · IDIblast+hmm Medium 46.7%58.9
Stenogyne_calaminthoides__EVM_prediction_HiC_scaffold_29.1716.mRNA1
Stenogyne calaminthoidesTerpenoid · IDIblast+hmm Medium 80.5%57.2
origanum_vulgare_121271.g8.t1
Origanum vulgareTerpenoid · IDIblast+hmm Medium 80.0%43.6
COPY_c56623_g1_i1_len_469
Cornutia pyramidataTerpenoid · IDIblast+hmm Medium 65.2%40.2
HYSU_c22910_g1_i1_len_420
Hyptis suaveolensTerpenoid · IDIblast+hmm Medium 91.7%34.4
5:ILLG10G85.58m1
Isodon lophanthoidesTerpenoid · IDIblast+hmm Medium 60.8%20.7
LYAM_c35834_g1_i3_len_2920
Lycopus americanusTerpenoid · IDIblast+hmm Medium 61.9%14.2
PRLA_c23639_g1_i1_len_366
Prostanthera lasianthosTerpenoid · IDIblast+hmm Medium 71.9%13.9
ocimum_sanctum_Ote100276680051
Ocimum tenuiflorumTerpenoid · IDIblast+hmm Medium 60.6%13.6
508.g185.t1
Ocimum basilicumTerpenoid · IDIblast+hmm Medium 58.9%13.0
g38128.t1
Nepeta catariaTerpenoid · IDIblast+hmm Medium 41.6%9.7
1229.g11.t1
Ocimum basilicumTerpenoid · IDIblast Medium 50.8%—
1282.g27.t1
Ocimum basilicumTerpenoid · IDIblast Medium 67.6%—
1338.g7.t1
Ocimum basilicumTerpenoid · IDIblast Medium 63.3%—
1338.g7.t1.1.5db1516c
Ocimum basilicumTerpenoid · IDIblast Medium 60.8%—
1369.g17.t1
Ocimum basilicumTerpenoid · IDIblast Medium 64.0%—
1533.g20.t1
Ocimum basilicumTerpenoid · IDIblast Medium 58.6%—
1862.g4.t1
Ocimum basilicumTerpenoid · IDIblast Medium 58.3%—
18:ILLG2G5.14m1
Isodon lophanthoidesTerpenoid · IDIblast Medium 54.1%—
1910.g9.t1
Ocimum basilicumTerpenoid · IDIblast Medium 63.9%—
1949.g218.t1
Ocimum basilicumTerpenoid · IDIblast Medium 47.1%—
1975.g63.t1
Ocimum basilicumTerpenoid · IDIblast Medium 63.1%—
19:ILLG3G2.52m1
Isodon lophanthoidesTerpenoid · IDIblast Medium 62.1%—
19:ILLG3G23.46m1
Isodon lophanthoidesTerpenoid · IDIblast Medium 55.6%—
19:ILLG3G9.56m1
Isodon lophanthoidesTerpenoid · IDIblast Medium 62.1%—
22:ILLG12G75.17m1
Isodon lophanthoidesTerpenoid · IDIblast Medium 56.8%—
23:ILLG1G15.13m1
Isodon lophanthoidesTerpenoid · IDIblast Medium 48.8%—
23:ILLG1G15.23m1
Isodon lophanthoidesTerpenoid · IDIblast Medium 60.4%—
24:ILLG5G112.47m1
Isodon lophanthoidesTerpenoid · IDIblast Medium 54.3%—
24:ILLG5G94.25m1
Isodon lophanthoidesTerpenoid · IDIblast Medium 52.2%—
24:ILLG5G94.26m1
Isodon lophanthoidesTerpenoid · IDIblast Medium 47.4%—
30:ILLG11G286.0m1
Isodon lophanthoidesTerpenoid · IDIblast Medium 45.9%—
30:ILLG11G38.0m1
Isodon lophanthoidesTerpenoid · IDIblast Medium 51.2%—
30:ILLG11G64.12m1
Isodon lophanthoidesTerpenoid · IDIblast Medium 56.1%—
31:ILLG4G50.63m1
Isodon lophanthoidesTerpenoid · IDIblast Medium 52.9%—