LamiOmicsDB Lamiaceae Multi-Omics Database
v1 808 species · 3 phylogenies · 6,313 sequences

Pathway-family scientific record

CHS

Chalcone synthase family

This module includes PlantSME enzyme-family assignments and traceable candidate protein identifiers from genome-derived or transcriptome-derived protein sets.

Browse candidatesCompare speciesCSV
Stable locus plantsmeFlavonoid biosynthesis
Public candidate IDs
1,120
Species with candidates
80
Species with assignments
80
Source assignments
1,166
Gene-tree candidates
0
Motif candidates
0

Evidence profile

Available evidence layers

◆Candidate identifiers1,120 public species-linked identifiers can be inspected.
GTGene-tree workflow0 comparable source candidates; 0 high-confidence source calls.
MMotif-screen proxy0 motif-screen candidates; 0 with all required motif proxies.
100 kbLocal clustering proxy0 clusters across 0 species; maximum cluster size 0.

Comparative signature

Lamiaceae comparison fields

Rate delta
Not calculated
Prevalence delta
Not calculated
Comparable source
PlantSME family assignments
Comparable source count
1,166
Public candidate count
1,120
Evidence mode
plantsme

Species coverage

Assignment and locus coverage by species

Source family counts and public candidate identifiers are shown in separate columns.

SpeciesEvidence stateSource countCandidate IDsExpression
Pogostemon cablinLamioideae · Pogostemon Stable locus 9650 Available
Ocimum basilicumNepetoideae · Ocimum Stable locus 5050 Available
Teucrium chamaedrysAjugoideae · Teucrium Stable locus 3535 No matrix
Stenogyne calaminthoidesLamioideae · Stenogyne Stable locus 3434 No matrix
Glechoma hederaceaNepetoideae · Glechoma Stable locus 2323 No matrix
Ocimum tenuiflorumNepetoideae · Ocimum Stable locus 2323 No matrix
Nepeta catariaNepetoideae · Nepeta Stable locus 2121 Available
Teucrium marumAjugoideae · Teucrium Stable locus 2121 No matrix
Elsholtzia splendensNepetoideae · Elsholtzia Stable locus 2020 No matrix
Hyptis suaveolensNepetoideae · Hyptis Stable locus 2020 No matrix
Origanum majoranaNepetoideae · Origanum Stable locus 1919 No matrix
Plectranthus barbatusNepetoideae · Plectranthus Stable locus 1919 No matrix
Glechoma longitubaNepetoideae · Glechoma Stable locus 1818 No matrix
Perilla frutescensNepetoideae · Perilla Stable locus 1818 No matrix
Phlomoides rotataLamioideae · Phlomoides Stable locus 1818 No matrix
Callicarpa americanaCallicarpoideae · Callicarpa Stable locus 1717 No matrix
Collinsonia canadensisNepetoideae · Collinsonia Stable locus 1717 No matrix
Origanum vulgareNepetoideae · Origanum Stable locus 1717 No matrix
Salvia rosmarinusNepetoideae · Salvia Stable locus 1717 Available
Salvia splendensNepetoideae · Salvia Stable locus 1717 No matrix
Clinopodium barosmumNepetoideae · Clinopodium Stable locus 1616 No matrix
Perovskia atriplicifoliaNepetoideae · Perovskia Stable locus 1616 No matrix
Rotheca myricoidesAjugoideae · Rotheca Stable locus 1616 No matrix
Gmelina philippensisPremnoideae · Gmelina Stable locus 1515 No matrix
Leonurus cardiacaLamioideae · Leonurus Stable locus 1515 No matrix
Lycopus americanusNepetoideae · Lycopus Stable locus 1515 No matrix
Melissa officinalisNepetoideae · Melissa Stable locus 1515 No matrix
Mentha x piperitaNepetoideae · Mentha Stable locus 1515 No matrix
Salvia officinalisNepetoideae · Salvia Stable locus 1515 No matrix
Cornutia pyramidataPremnoideae · Cornutia Stable locus 1414 No matrix
Perilla citriodoraNepetoideae · Perilla Stable locus 1414 No matrix
Perilla frutescens var. hirtellaNepetoideae · Perilla Stable locus 1414 No matrix
Stachys officinalisLamioideae · Stachys Stable locus 1414 No matrix
Isodon serraNepetoideae · Isodon Stable locus 1313 No matrix
Lavandula angustifoliaNepetoideae · Lavandula Stable locus 1313 No matrix
Premna microphyllaPremnoideae · Premna Stable locus 1313 No matrix
Thymus vulgarisNepetoideae · Thymus Stable locus 1313 No matrix
Ballota pseudodictamnusLamioideae · Ballota Stable locus 1212 No matrix
Isodon lophanthoidesNepetoideae · Isodon Stable locus 1212 No matrix
Leonotis leonurusLamioideae · Leonotis Stable locus 1212 No matrix
Mentha spicataNepetoideae · Mentha Stable locus 1212 No matrix
Salvia bowleyanaNepetoideae · Salvia Stable locus 1212 No matrix
Salvia hispanicaNepetoideae · Salvia Stable locus 1212 No matrix
Tectona grandisTectonoideae · Tectona Stable locus 1212 Available
Ajuga reptansAjugoideae · Ajuga Stable locus 1111 No matrix
Clinopodium gracileNepetoideae · Clinopodium Stable locus 1111 No matrix
Hyssopus officinalisNepetoideae · Hyssopus Stable locus 1111 No matrix
Monarda didymaNepetoideae · Monarda Stable locus 1111 No matrix
Mosla soochowensisNepetoideae · Mosla Stable locus 1111 No matrix
Nepeta mussiniiNepetoideae · Nepeta Stable locus 1111 Available
Phlomis fruticosaLamioideae · Phlomis Stable locus 1111 No matrix
Salvia miltiorrhizaNepetoideae · Salvia Stable locus 1111 Available
Agastache foeniculumNepetoideae · Agastache Stable locus 1010 No matrix
Marrubium vulgareLamioideae · Marrubium Stable locus 1010 No matrix
Mentha longifoliaNepetoideae · Mentha Stable locus 1010 Available
Mosla chinensisNepetoideae · Mosla Stable locus 1010 No matrix
Prunella vulgarisNepetoideae · Prunella Stable locus 1010 No matrix
Salvia divinorumNepetoideae · Salvia Stable locus 1010 No matrix
Scutellaria baicalensisScutellarioideae · Scutellaria Stable locus 1010 No matrix
Vitex agnus-castusViticoideae · Vitex Stable locus 1010 No matrix
Agastache rugosaNepetoideae · Agastache Stable locus 99 No matrix
Callicarpa nudifloraCallicarpoideae · Callicarpa Stable locus 99 No matrix
Drepanocaryum sewerzowiiNepetoideae · Drepanocaryum Stable locus 99 No matrix
Holmskioldia sanguineaScutellarioideae · Holmskioldia Stable locus 99 No matrix
Marmoritis complanataNepetoideae · Marmoritis Stable locus 99 No matrix
Schizonepeta tenuifoliaNepetoideae · Schizonepeta Stable locus 99 No matrix
Teucrium canadenseAjugoideae · Teucrium Stable locus 99 No matrix
Thymus quinquecostatusNepetoideae · Thymus Stable locus 99 No matrix
Clerodendrum bungeiAjugoideae · Clerodendrum Stable locus 88 No matrix
Prostanthera lasianthosProstantheroideae · Prostanthera Stable locus 88 No matrix
Petraeovitex bambusetoriumPeronematoideae · Petraeovitex Stable locus 77 No matrix
Westringia fruticosaProstantheroideae · Westringia Stable locus 77 No matrix
Ajuga decumbensAjugoideae · Ajuga Stable locus 66 No matrix
Dracocephalum rupestreNepetoideae · Dracocephalum Stable locus 66 No matrix
Lamium albumLamioideae · Lamium Stable locus 66 No matrix
Leonurus japonicusLamioideae · Leonurus Stable locus 66 No matrix
Salvia sclareaNepetoideae · Salvia Stable locus 66 No matrix
Scutellaria barbataScutellarioideae · Scutellaria Stable locus 66 No matrix
Congea tomentosaSymphorematoideae · Congea Stable locus 55 No matrix
Leonurus sibiricusLamioideae · Leonurus Stable locus 55 No matrix

Candidate records

Traceable candidate identifiers

Filter and inspect candidate identifiers for this family.

Clear
Candidate IDSpeciesPathway / familyEvidenceConfidenceIdentityHMM score
tectona_grandis_Tg08g04820.t1
Tectona grandisFlavonoid · CHSblast+hmm High 71.1%494.9
GMPH_c27979_g1_i2_len_943
Gmelina philippensisFlavonoid · CHSblast+hmm High 69.9%492.6
g24672.t1
Nepeta catariaFlavonoid · CHSblast+hmm High 67.3%491.0
rna-gnl|WGS:QIYW|chr03_10699891_10701174.mrna1
Perilla citriodoraFlavonoid · CHSblast+hmm High 69.9%489.1
rna-gnl|WGS:QIYW|chr03_10699891_10701174.mrna1
Perilla frutescens var. hirtellaFlavonoid · CHSblast+hmm High 69.9%489.1
DRSE_g20599.t1
Drepanocaryum sewerzowiiFlavonoid · CHSblast+hmm High 73.9%488.4
Pat_A19G037100.m1
Pogostemon cablinFlavonoid · CHSblast+hmm High 71.5%488.1
g28870.t1
Nepeta mussiniiFlavonoid · CHSblast+hmm High 68.5%487.8
AG34_scaffold4_04390T
Agastache rugosaFlavonoid · CHSblast+hmm High 70.7%475.8
HOSA_c8400_g1_i1_len_751
Holmskioldia sanguineaFlavonoid · CHSblast+hmm High 81.9%472.6
PHFR_c57801_g1_i1_len_819
Phlomis fruticosaFlavonoid · CHSblast+hmm High 90.0%465.5
Pat_B19G040100.m1
Pogostemon cablinFlavonoid · CHSblast+hmm High 64.7%465.5
KAL8486831.1
Phlomoides rotataFlavonoid · CHSblast+hmm High 68.5%459.8
KAL8486832.1
Phlomoides rotataFlavonoid · CHSblast+hmm High 68.5%459.8
KAL8486833.1
Phlomoides rotataFlavonoid · CHSblast+hmm High 68.5%459.8
KAL8486834.1
Phlomoides rotataFlavonoid · CHSblast+hmm High 68.5%459.8
g38840.t1
Hyssopus officinalisFlavonoid · CHSblast+hmm High 65.7%452.7
Clgra_009437-T1
Clinopodium gracileFlavonoid · CHSblast+hmm High 66.7%445.7
Pat_A19G036900.m1
Pogostemon cablinFlavonoid · CHSblast+hmm High 56.3%442.6
KAL8486809.1
Phlomoides rotataFlavonoid · CHSblast+hmm High 85.3%441.9
PRMI_c21368_g1_i1_len_799
Premna microphyllaFlavonoid · CHSblast+hmm High 72.3%440.6
Stenogyne_calaminthoides__EVM_prediction_HiC_scaffold_47.412.mRNA1
Stenogyne calaminthoidesFlavonoid · CHSblast+hmm High 75.0%437.8
HOSA_c43340_g1_i1_len_926
Holmskioldia sanguineaFlavonoid · CHSblast+hmm High 80.9%435.1
GMPH_c28982_g2_i2_len_862
Gmelina philippensisFlavonoid · CHSblast+hmm High 75.3%434.2
Pat_A19G036100.m1
Pogostemon cablinFlavonoid · CHSblast+hmm High 59.6%421.6
Pat_A19G037000.m1
Pogostemon cablinFlavonoid · CHSblast+hmm High 59.6%421.6
Clgra_029058-T1
Clinopodium gracileFlavonoid · CHSblast+hmm High 67.8%417.7
LYAM_c4508_g1_i1_len_868
Lycopus americanusFlavonoid · CHSblast+hmm High 71.1%417.4
Sbai7C104T3.1
Scutellaria baicalensisFlavonoid · CHSblast+hmm High 78.0%416.3
GlLon_005349-T1
Glechoma longitubaFlavonoid · CHSblast+hmm High 67.9%415.6
GLHE_c122377_g1_i1_len_828
Glechoma hederaceaFlavonoid · CHSblast+hmm High 87.7%414.8
LELE_c15378_g1_i1_len_835
Leonotis leonurusFlavonoid · CHSblast+hmm High 77.6%413.0
Pat_A20G040400.m1
Pogostemon cablinFlavonoid · CHSblast+hmm High 67.1%408.4
Stenogyne_calaminthoides__EVM_prediction_HiC_scaffold_46.1455.mRNA1
Stenogyne calaminthoidesFlavonoid · CHSblast+hmm High 69.6%407.4
Sbai3C104T3.1
Scutellaria baicalensisFlavonoid · CHSblast+hmm High 71.1%402.9
506.g16.t1
Ocimum basilicumFlavonoid · CHSblast+hmm High 69.3%400.5
AG34_scaffold4_04410T
Agastache rugosaFlavonoid · CHSblast+hmm High 73.3%395.8
Teucrium_chamaedrys__Tcha50780
Teucrium chamaedrysFlavonoid · CHSblast+hmm High 75.4%388.9
ORMA_c29134_g1_i1_len_715
Origanum majoranaFlavonoid · CHSblast+hmm High 72.7%380.1
Pat_B19G034400.m1
Pogostemon cablinFlavonoid · CHSblast+hmm High 70.5%377.6
GLHE_c31552_g1_i1_len_742
Glechoma hederaceaFlavonoid · CHSblast+hmm High 70.4%373.4
CAamescaffold_1310000580.v1.94
Callicarpa americanaFlavonoid · CHSblast+hmm High 94.0%364.0
evm.model.chr11.2562
Prunella vulgarisFlavonoid · CHSblast+hmm High 61.5%358.5
Mlonscaffold_11_length_299437840026480.1.v1.326
Mentha longifoliaFlavonoid · CHSblast+hmm High 80.0%353.6
Mlonscaffold_2_length_455260290069380.1.v1.326
Mentha longifoliaFlavonoid · CHSblast+hmm High 80.0%353.6
tectona_grandis_Tg12g15700.t1
Tectona grandisFlavonoid · CHSblast+hmm High 82.4%352.7
KAL1543353.1
Salvia divinorumFlavonoid · CHSblast+hmm High 84.4%351.6
Es3A.G154800.t1
Elsholtzia splendensFlavonoid · CHSblast+hmm High 79.9%350.3
Es3B.G154400.t1
Elsholtzia splendensFlavonoid · CHSblast+hmm High 79.9%350.3
XP_047954043.1
Salvia hispanicaFlavonoid · CHSblast+hmm High 84.4%349.9