LamiOmicsDB Lamiaceae Multi-Omics Database
v1 808 species · 3 phylogenies · 6,313 sequences

Pathway-family scientific record

CHS

Chalcone synthase family

This module includes PlantSME enzyme-family assignments and traceable candidate protein identifiers from genome-derived or transcriptome-derived protein sets.

Browse candidatesCompare speciesCSV
Stable locus plantsmeFlavonoid biosynthesis
Public candidate IDs
1,120
Species with candidates
80
Species with assignments
80
Source assignments
1,166
Gene-tree candidates
0
Motif candidates
0

Evidence profile

Available evidence layers

◆Candidate identifiers1,120 public species-linked identifiers can be inspected.
GTGene-tree workflow0 comparable source candidates; 0 high-confidence source calls.
MMotif-screen proxy0 motif-screen candidates; 0 with all required motif proxies.
100 kbLocal clustering proxy0 clusters across 0 species; maximum cluster size 0.

Comparative signature

Lamiaceae comparison fields

Rate delta
Not calculated
Prevalence delta
Not calculated
Comparable source
PlantSME family assignments
Comparable source count
1,166
Public candidate count
1,120
Evidence mode
plantsme

Species coverage

Assignment and locus coverage by species

Source family counts and public candidate identifiers are shown in separate columns.

SpeciesEvidence stateSource countCandidate IDsExpression
Pogostemon cablinLamioideae · Pogostemon Stable locus 9650 Available
Ocimum basilicumNepetoideae · Ocimum Stable locus 5050 Available
Teucrium chamaedrysAjugoideae · Teucrium Stable locus 3535 No matrix
Stenogyne calaminthoidesLamioideae · Stenogyne Stable locus 3434 No matrix
Glechoma hederaceaNepetoideae · Glechoma Stable locus 2323 No matrix
Ocimum tenuiflorumNepetoideae · Ocimum Stable locus 2323 No matrix
Nepeta catariaNepetoideae · Nepeta Stable locus 2121 Available
Teucrium marumAjugoideae · Teucrium Stable locus 2121 No matrix
Elsholtzia splendensNepetoideae · Elsholtzia Stable locus 2020 No matrix
Hyptis suaveolensNepetoideae · Hyptis Stable locus 2020 No matrix
Origanum majoranaNepetoideae · Origanum Stable locus 1919 No matrix
Plectranthus barbatusNepetoideae · Plectranthus Stable locus 1919 No matrix
Glechoma longitubaNepetoideae · Glechoma Stable locus 1818 No matrix
Perilla frutescensNepetoideae · Perilla Stable locus 1818 No matrix
Phlomoides rotataLamioideae · Phlomoides Stable locus 1818 No matrix
Callicarpa americanaCallicarpoideae · Callicarpa Stable locus 1717 No matrix
Collinsonia canadensisNepetoideae · Collinsonia Stable locus 1717 No matrix
Origanum vulgareNepetoideae · Origanum Stable locus 1717 No matrix
Salvia rosmarinusNepetoideae · Salvia Stable locus 1717 Available
Salvia splendensNepetoideae · Salvia Stable locus 1717 No matrix
Clinopodium barosmumNepetoideae · Clinopodium Stable locus 1616 No matrix
Perovskia atriplicifoliaNepetoideae · Perovskia Stable locus 1616 No matrix
Rotheca myricoidesAjugoideae · Rotheca Stable locus 1616 No matrix
Gmelina philippensisPremnoideae · Gmelina Stable locus 1515 No matrix
Leonurus cardiacaLamioideae · Leonurus Stable locus 1515 No matrix
Lycopus americanusNepetoideae · Lycopus Stable locus 1515 No matrix
Melissa officinalisNepetoideae · Melissa Stable locus 1515 No matrix
Mentha x piperitaNepetoideae · Mentha Stable locus 1515 No matrix
Salvia officinalisNepetoideae · Salvia Stable locus 1515 No matrix
Cornutia pyramidataPremnoideae · Cornutia Stable locus 1414 No matrix
Perilla citriodoraNepetoideae · Perilla Stable locus 1414 No matrix
Perilla frutescens var. hirtellaNepetoideae · Perilla Stable locus 1414 No matrix
Stachys officinalisLamioideae · Stachys Stable locus 1414 No matrix
Isodon serraNepetoideae · Isodon Stable locus 1313 No matrix
Lavandula angustifoliaNepetoideae · Lavandula Stable locus 1313 No matrix
Premna microphyllaPremnoideae · Premna Stable locus 1313 No matrix
Thymus vulgarisNepetoideae · Thymus Stable locus 1313 No matrix
Ballota pseudodictamnusLamioideae · Ballota Stable locus 1212 No matrix
Isodon lophanthoidesNepetoideae · Isodon Stable locus 1212 No matrix
Leonotis leonurusLamioideae · Leonotis Stable locus 1212 No matrix
Mentha spicataNepetoideae · Mentha Stable locus 1212 No matrix
Salvia bowleyanaNepetoideae · Salvia Stable locus 1212 No matrix
Salvia hispanicaNepetoideae · Salvia Stable locus 1212 No matrix
Tectona grandisTectonoideae · Tectona Stable locus 1212 Available
Ajuga reptansAjugoideae · Ajuga Stable locus 1111 No matrix
Clinopodium gracileNepetoideae · Clinopodium Stable locus 1111 No matrix
Hyssopus officinalisNepetoideae · Hyssopus Stable locus 1111 No matrix
Monarda didymaNepetoideae · Monarda Stable locus 1111 No matrix
Mosla soochowensisNepetoideae · Mosla Stable locus 1111 No matrix
Nepeta mussiniiNepetoideae · Nepeta Stable locus 1111 Available
Phlomis fruticosaLamioideae · Phlomis Stable locus 1111 No matrix
Salvia miltiorrhizaNepetoideae · Salvia Stable locus 1111 Available
Agastache foeniculumNepetoideae · Agastache Stable locus 1010 No matrix
Marrubium vulgareLamioideae · Marrubium Stable locus 1010 No matrix
Mentha longifoliaNepetoideae · Mentha Stable locus 1010 Available
Mosla chinensisNepetoideae · Mosla Stable locus 1010 No matrix
Prunella vulgarisNepetoideae · Prunella Stable locus 1010 No matrix
Salvia divinorumNepetoideae · Salvia Stable locus 1010 No matrix
Scutellaria baicalensisScutellarioideae · Scutellaria Stable locus 1010 No matrix
Vitex agnus-castusViticoideae · Vitex Stable locus 1010 No matrix
Agastache rugosaNepetoideae · Agastache Stable locus 99 No matrix
Callicarpa nudifloraCallicarpoideae · Callicarpa Stable locus 99 No matrix
Drepanocaryum sewerzowiiNepetoideae · Drepanocaryum Stable locus 99 No matrix
Holmskioldia sanguineaScutellarioideae · Holmskioldia Stable locus 99 No matrix
Marmoritis complanataNepetoideae · Marmoritis Stable locus 99 No matrix
Schizonepeta tenuifoliaNepetoideae · Schizonepeta Stable locus 99 No matrix
Teucrium canadenseAjugoideae · Teucrium Stable locus 99 No matrix
Thymus quinquecostatusNepetoideae · Thymus Stable locus 99 No matrix
Clerodendrum bungeiAjugoideae · Clerodendrum Stable locus 88 No matrix
Prostanthera lasianthosProstantheroideae · Prostanthera Stable locus 88 No matrix
Petraeovitex bambusetoriumPeronematoideae · Petraeovitex Stable locus 77 No matrix
Westringia fruticosaProstantheroideae · Westringia Stable locus 77 No matrix
Ajuga decumbensAjugoideae · Ajuga Stable locus 66 No matrix
Dracocephalum rupestreNepetoideae · Dracocephalum Stable locus 66 No matrix
Lamium albumLamioideae · Lamium Stable locus 66 No matrix
Leonurus japonicusLamioideae · Leonurus Stable locus 66 No matrix
Salvia sclareaNepetoideae · Salvia Stable locus 66 No matrix
Scutellaria barbataScutellarioideae · Scutellaria Stable locus 66 No matrix
Congea tomentosaSymphorematoideae · Congea Stable locus 55 No matrix
Leonurus sibiricusLamioideae · Leonurus Stable locus 55 No matrix

Candidate records

Traceable candidate identifiers

Filter and inspect candidate identifiers for this family.

Clear
Candidate IDSpeciesPathway / familyEvidenceConfidenceIdentityHMM score
origanum_vulgare_463.g41.t1
Origanum vulgareFlavonoid · CHSblast+hmm High 84.1%349.7
GWHPBJVA012838
Thymus quinquecostatusFlavonoid · CHSblast+hmm High 82.6%349.3
origanum_vulgare_125883.g262.t1
Origanum vulgareFlavonoid · CHSblast+hmm High 78.4%349.3
XP_042038421.1
Salvia splendensFlavonoid · CHSblast+hmm High 83.6%349.0
31:ILLG4G300.78m1
Isodon lophanthoidesFlavonoid · CHSblast+hmm High 80.6%348.6
LECA_c5277_g1_i1_len_536
Leonurus cardiacaFlavonoid · CHSblast+hmm High 89.9%348.6
MAVU_c20382_g1_i1_len_638
Marrubium vulgareFlavonoid · CHSblast+hmm High 70.8%348.0
Sbow01G0008850.1
Salvia bowleyanaFlavonoid · CHSblast+hmm High 71.7%348.0
GWHPBJVA018226
Thymus quinquecostatusFlavonoid · CHSblast+hmm High 78.2%347.5
Dru_2G0019790.1
Dracocephalum rupestreFlavonoid · CHSblast+hmm High 82.6%346.8
XP_042065563.1
Salvia splendensFlavonoid · CHSblast+hmm High 83.4%346.7
PHFR_c57801_g2_i1_len_557
Phlomis fruticosaFlavonoid · CHSblast+hmm High 92.6%346.4
Mc1g42500.1
Mosla chinensisFlavonoid · CHSblast+hmm High 78.9%344.9
scutellaria_barbata_GWHPAOTP022435
Scutellaria barbataFlavonoid · CHSblast+hmm High 79.1%344.7
Ms_c007g01969.1
Mosla soochowensisFlavonoid · CHSblast+hmm High 78.9%344.5
evm.model.LG16.1245
Clinopodium barosmumFlavonoid · CHSblast+hmm High 83.5%344.5
Clgra_005442-T1
Clinopodium gracileFlavonoid · CHSblast+hmm High 78.6%344.2
rna-gnl|WGS:QFCC|chr20_33448431_33449690.mrna1
Perilla frutescensFlavonoid · CHSblast+hmm High 79.2%344.0
rna-gnl|WGS:QIYW|chr05_30282380_30283651.mrna1
Perilla citriodoraFlavonoid · CHSblast+hmm High 79.2%344.0
rna-gnl|WGS:QIYW|chr05_30282380_30283651.mrna1
Perilla frutescens var. hirtellaFlavonoid · CHSblast+hmm High 79.2%344.0
Teum.05G021550.1
Teucrium marumFlavonoid · CHSblast+hmm High 79.3%343.9
evm.model.LG20.338
Clinopodium barosmumFlavonoid · CHSblast+hmm High 85.1%343.5
rna-gnl|WGS:QFCC|chr02_37023329_37024569.mrna1
Perilla frutescensFlavonoid · CHSblast+hmm High 79.8%343.4
evm.model.Chr06.165
Callicarpa nudifloraFlavonoid · CHSblast+hmm High 82.2%343.3
Sbai8C66T3.1
Scutellaria baicalensisFlavonoid · CHSblast+hmm High 80.6%343.2
PRMI_c45826_g1_i1_len_1431
Premna microphyllaFlavonoid · CHSblast+hmm High 78.1%342.6
Sbai8A22T136.1
Scutellaria baicalensisFlavonoid · CHSblast+hmm High 80.1%342.6
evm.model.LG16.147
Clinopodium barosmumFlavonoid · CHSblast+hmm High 79.1%342.4
Stenogyne_calaminthoides__EVM_prediction_HiC_scaffold_36.173.mRNA1
Stenogyne calaminthoidesFlavonoid · CHSblast+hmm High 83.6%342.3
Teucrium_chamaedrys__Tcha113447
Teucrium chamaedrysFlavonoid · CHSblast+hmm High 77.9%341.9
g9899.t1
Hyssopus officinalisFlavonoid · CHSblast+hmm High 82.9%341.9
Roff26910356740
Salvia rosmarinusFlavonoid · CHSblast+hmm High 84.1%341.7
Teucrium_chamaedrys__Tcha71051
Teucrium chamaedrysFlavonoid · CHSblast+hmm High 77.7%341.6
Lj10g03160.1
Leonurus japonicusFlavonoid · CHSblast+hmm High 81.7%341.0
30:ILLG11G241.18m1
Isodon lophanthoidesFlavonoid · CHSblast+hmm High 84.2%340.7
evm.model.ptg000004l.823
Isodon serraFlavonoid · CHSblast+hmm High 84.5%340.7
AG34_scaffold2_20780T
Agastache rugosaFlavonoid · CHSblast+hmm High 81.7%340.6
AGFO_c13739_g1_i1_len_1467
Agastache foeniculumFlavonoid · CHSblast+hmm High 81.7%340.5
CAame04G0003620.v1.94
Callicarpa americanaFlavonoid · CHSblast+hmm High 82.2%340.4
Mlonscaffold_11_length_299437840014500.1.v1.326
Mentha longifoliaFlavonoid · CHSblast+hmm High 83.8%340.4
g10029.t1
Nepeta catariaFlavonoid · CHSblast+hmm High 79.8%340.3
Teucrium_chamaedrys__Tcha24234
Teucrium chamaedrysFlavonoid · CHSblast+hmm High 77.5%340.2
Mc1g37870.1
Mosla chinensisFlavonoid · CHSblast+hmm High 81.3%339.6
Stenogyne_calaminthoides__EVM_prediction_HiC_scaffold_46.1454.mRNA1
Stenogyne calaminthoidesFlavonoid · CHSblast+hmm High 64.5%339.6
evm.model.Chr06.1706
Callicarpa nudifloraFlavonoid · CHSblast+hmm High 84.4%339.6
MACO_g1884.t1
Marmoritis complanataFlavonoid · CHSblast+hmm High 79.2%339.5
MACO_g4766.t1
Marmoritis complanataFlavonoid · CHSblast+hmm High 83.3%339.4
scutellaria_barbata_GWHPAOTP023118
Scutellaria barbataFlavonoid · CHSblast+hmm High 81.1%339.4
Pat_A02G102900.m1
Pogostemon cablinFlavonoid · CHSblast+hmm High 77.4%339.3
g4889.t1
Nepeta mussiniiFlavonoid · CHSblast+hmm High 83.6%339.3