LamiOmicsDB Lamiaceae Multi-Omics Database
v1 808 species · 3 phylogenies · 6,313 sequences

Pathway-family scientific record

FK

FK enzyme-family module

This module includes PlantSME enzyme-family assignments and traceable candidate protein identifiers from genome-derived or transcriptome-derived protein sets.

Browse candidatesCompare speciesCSV
Stable locus plantsmeSteroid and sterol biosynthesis
Public candidate IDs
703
Species with candidates
80
Species with assignments
80
Source assignments
703
Gene-tree candidates
0
Motif candidates
0

Evidence profile

Available evidence layers

◆Candidate identifiers703 public species-linked identifiers can be inspected.
GTGene-tree workflow0 comparable source candidates; 0 high-confidence source calls.
MMotif-screen proxy0 motif-screen candidates; 0 with all required motif proxies.
100 kbLocal clustering proxy0 clusters across 0 species; maximum cluster size 0.

Comparative signature

Lamiaceae comparison fields

Rate delta
Not calculated
Prevalence delta
Not calculated
Comparable source
PlantSME family assignments
Comparable source count
703
Public candidate count
703
Evidence mode
plantsme

Species coverage

Assignment and locus coverage by species

Source family counts and public candidate identifiers are shown in separate columns.

SpeciesEvidence stateSource countCandidate IDsExpression
Teucrium chamaedrysAjugoideae · Teucrium Stable locus 4040 No matrix
Pogostemon cablinLamioideae · Pogostemon Stable locus 3535 Available
Nepeta catariaNepetoideae · Nepeta Stable locus 2424 Available
Teucrium marumAjugoideae · Teucrium Stable locus 2323 No matrix
Ocimum basilicumNepetoideae · Ocimum Stable locus 2121 Available
Phlomoides rotataLamioideae · Phlomoides Stable locus 2121 No matrix
Salvia splendensNepetoideae · Salvia Stable locus 2020 No matrix
Nepeta mussiniiNepetoideae · Nepeta Stable locus 1818 Available
Callicarpa americanaCallicarpoideae · Callicarpa Stable locus 1616 No matrix
Elsholtzia splendensNepetoideae · Elsholtzia Stable locus 1515 No matrix
Hyssopus officinalisNepetoideae · Hyssopus Stable locus 1515 No matrix
Stenogyne calaminthoidesLamioideae · Stenogyne Stable locus 1212 No matrix
Clinopodium barosmumNepetoideae · Clinopodium Stable locus 1111 No matrix
Perilla frutescensNepetoideae · Perilla Stable locus 1111 No matrix
Prunella vulgarisNepetoideae · Prunella Stable locus 1111 No matrix
Salvia rosmarinusNepetoideae · Salvia Stable locus 1111 Available
Mentha longifoliaNepetoideae · Mentha Stable locus 1010 Available
Origanum vulgareNepetoideae · Origanum Stable locus 1010 No matrix
Isodon serraNepetoideae · Isodon Stable locus 99 No matrix
Marmoritis complanataNepetoideae · Marmoritis Stable locus 99 No matrix
Origanum majoranaNepetoideae · Origanum Stable locus 99 No matrix
Thymus quinquecostatusNepetoideae · Thymus Stable locus 99 No matrix
Callicarpa nudifloraCallicarpoideae · Callicarpa Stable locus 88 No matrix
Clinopodium gracileNepetoideae · Clinopodium Stable locus 88 No matrix
Dracocephalum rupestreNepetoideae · Dracocephalum Stable locus 88 No matrix
Isodon lophanthoidesNepetoideae · Isodon Stable locus 88 No matrix
Leonurus sibiricusLamioideae · Leonurus Stable locus 88 No matrix
Marrubium vulgareLamioideae · Marrubium Stable locus 88 No matrix
Mosla soochowensisNepetoideae · Mosla Stable locus 88 No matrix
Salvia bowleyanaNepetoideae · Salvia Stable locus 88 No matrix
Salvia miltiorrhizaNepetoideae · Salvia Stable locus 88 Available
Schizonepeta tenuifoliaNepetoideae · Schizonepeta Stable locus 88 No matrix
Scutellaria baicalensisScutellarioideae · Scutellaria Stable locus 88 No matrix
Agastache foeniculumNepetoideae · Agastache Stable locus 77 No matrix
Clerodendrum bungeiAjugoideae · Clerodendrum Stable locus 77 No matrix
Cornutia pyramidataPremnoideae · Cornutia Stable locus 77 No matrix
Drepanocaryum sewerzowiiNepetoideae · Drepanocaryum Stable locus 77 No matrix
Mosla chinensisNepetoideae · Mosla Stable locus 77 No matrix
Petraeovitex bambusetoriumPeronematoideae · Petraeovitex Stable locus 77 No matrix
Salvia divinorumNepetoideae · Salvia Stable locus 77 No matrix
Salvia hispanicaNepetoideae · Salvia Stable locus 77 No matrix
Tectona grandisTectonoideae · Tectona Stable locus 77 Available
Teucrium canadenseAjugoideae · Teucrium Stable locus 77 No matrix
Ballota pseudodictamnusLamioideae · Ballota Stable locus 66 No matrix
Collinsonia canadensisNepetoideae · Collinsonia Stable locus 66 No matrix
Congea tomentosaSymphorematoideae · Congea Stable locus 66 No matrix
Holmskioldia sanguineaScutellarioideae · Holmskioldia Stable locus 66 No matrix
Hyptis suaveolensNepetoideae · Hyptis Stable locus 66 No matrix
Mentha spicataNepetoideae · Mentha Stable locus 66 No matrix
Ocimum tenuiflorumNepetoideae · Ocimum Stable locus 66 No matrix
Perilla citriodoraNepetoideae · Perilla Stable locus 66 No matrix
Perilla frutescens var. hirtellaNepetoideae · Perilla Stable locus 66 No matrix
Plectranthus barbatusNepetoideae · Plectranthus Stable locus 66 No matrix
Scutellaria barbataScutellarioideae · Scutellaria Stable locus 66 No matrix
Thymus vulgarisNepetoideae · Thymus Stable locus 66 No matrix
Glechoma hederaceaNepetoideae · Glechoma Stable locus 55 No matrix
Gmelina philippensisPremnoideae · Gmelina Stable locus 55 No matrix
Lamium albumLamioideae · Lamium Stable locus 55 No matrix
Lavandula angustifoliaNepetoideae · Lavandula Stable locus 55 No matrix
Leonotis leonurusLamioideae · Leonotis Stable locus 55 No matrix
Leonurus cardiacaLamioideae · Leonurus Stable locus 55 No matrix
Leonurus japonicusLamioideae · Leonurus Stable locus 55 No matrix
Lycopus americanusNepetoideae · Lycopus Stable locus 55 No matrix
Melissa officinalisNepetoideae · Melissa Stable locus 55 No matrix
Monarda didymaNepetoideae · Monarda Stable locus 55 No matrix
Phlomis fruticosaLamioideae · Phlomis Stable locus 55 No matrix
Premna microphyllaPremnoideae · Premna Stable locus 55 No matrix
Prostanthera lasianthosProstantheroideae · Prostanthera Stable locus 55 No matrix
Rotheca myricoidesAjugoideae · Rotheca Stable locus 55 No matrix
Salvia officinalisNepetoideae · Salvia Stable locus 55 No matrix
Stachys officinalisLamioideae · Stachys Stable locus 55 No matrix
Vitex agnus-castusViticoideae · Vitex Stable locus 55 No matrix
Ajuga decumbensAjugoideae · Ajuga Stable locus 44 No matrix
Ajuga reptansAjugoideae · Ajuga Stable locus 44 No matrix
Mentha x piperitaNepetoideae · Mentha Stable locus 44 No matrix
Perovskia atriplicifoliaNepetoideae · Perovskia Stable locus 44 No matrix
Salvia sclareaNepetoideae · Salvia Stable locus 44 No matrix
Westringia fruticosaProstantheroideae · Westringia Stable locus 44 No matrix
Agastache rugosaNepetoideae · Agastache Stable locus 33 No matrix
Glechoma longitubaNepetoideae · Glechoma Stable locus 11 No matrix

Candidate records

Traceable candidate identifiers

Filter and inspect candidate identifiers for this family.

Clear
Candidate IDSpeciesPathway / familyEvidenceConfidenceIdentityHMM score
COTO_c45425_g1_i2_len_2058
Congea tomentosaSteroid / sterol · FKblast+hmm High 78.2%661.1
Teum.14G002160.2
Teucrium marumSteroid / sterol · FKblast+hmm High 81.8%587.1
Ls6g06670.1
Leonurus sibiricusSteroid / sterol · FKblast+hmm High 77.3%577.2
Sbow04G0023560.1
Salvia bowleyanaSteroid / sterol · FKblast+hmm High 81.5%573.8
g8335.t1.4.5b2c7c7c
Nepeta mussiniiSteroid / sterol · FKblast+hmm High 80.5%569.2
XP_041998134.1
Salvia splendensSteroid / sterol · FKblast+hmm High 79.9%526.4
g8335.t1.1.5b2c7c7c
Nepeta mussiniiSteroid / sterol · FKblast+hmm High 79.6%522.6
g4038.t1.1.5b2d4a26
Nepeta catariaSteroid / sterol · FKblast+hmm High 79.0%522.3
g4038.t1.5.5b2d4a26
Nepeta catariaSteroid / sterol · FKblast+hmm High 79.0%522.3
g4038.t1.2.5b2d4a26
Nepeta catariaSteroid / sterol · FKblast+hmm High 79.6%520.6
g4038.t1.2.5b2d4a26.1.5b2d6ae7
Nepeta catariaSteroid / sterol · FKblast+hmm High 79.6%520.6
g8335.t1.5.5b2c7c7c
Nepeta mussiniiSteroid / sterol · FKblast+hmm High 79.6%519.3
GWHPBJVA007465
Thymus quinquecostatusSteroid / sterol · FKblast+hmm High 82.3%509.4
Roff24030308480
Salvia rosmarinusSteroid / sterol · FKblast+hmm High 81.2%498.1
Roff11520102760
Salvia rosmarinusSteroid / sterol · FKblast+hmm High 74.4%489.9
evm.model.Chr14.523
Callicarpa nudifloraSteroid / sterol · FKblast+hmm High 77.0%483.4
Teum.14G002160.4
Teucrium marumSteroid / sterol · FKblast+hmm High 79.2%452.0
AGFO_c26584_g1_i4_len_1399
Agastache foeniculumSteroid / sterol · FKblast+hmm High 78.9%407.1
g15345.t1.1.5b43bdc1.1.5b44e321
Hyssopus officinalisSteroid / sterol · FKblast+hmm High 73.4%399.4
Teum.14G002160.3
Teucrium marumSteroid / sterol · FKblast+hmm High 69.6%352.1
CLBU_c52727_g1_i7_len_2344
Clerodendrum bungeiSteroid / sterol · FKblast+hmm High 78.1%349.5
HYSU_c31147_g1_i5_len_987
Hyptis suaveolensSteroid / sterol · FKblast+hmm High 74.1%336.2
Pat_A10G109400.m1
Pogostemon cablinSteroid / sterol · FKblast+hmm High 75.4%331.5
Ls3g04190.1
Leonurus sibiricusSteroid / sterol · FKblast+hmm High 75.9%318.3
TECA_c31145_g1_i2_len_2072
Teucrium canadenseSteroid / sterol · FKblast+hmm High 77.2%310.7
Pat_A09G121500.m1
Pogostemon cablinSteroid / sterol · FKblast+hmm High 70.0%303.6
Pat_B10G097300.m1
Pogostemon cablinSteroid / sterol · FKblast+hmm High 69.3%299.3
Sch000009527
Schizonepeta tenuifoliaSteroid / sterol · FKblast+hmm High 61.1%228.7
Sbow02G0072470.1
Salvia bowleyanaSteroid / sterol · FKblast+hmm High 66.8%217.5
Ms_c002g00694.1
Mosla soochowensisSteroid / sterol · FKblast+hmm High 69.4%148.9
BAPS_c26128_g1_i1_len_1399
Ballota pseudodictamnusSteroid / sterol · FKblast+hmm High 31.3%139.1
COCA_c117397_g1_i1_len_1011
Collinsonia canadensisSteroid / sterol · FKblast+hmm High 33.3%116.4
ORMA_c40813_g1_i1_len_2262
Origanum majoranaSteroid / sterol · FKblast+hmm High 31.6%83.4
LAAL_c47742_g1_i1_len_427
Lamium albumSteroid / sterol · FKblast+hmm High 34.2%54.7
HOSA_c61928_g1_i1_len_371
Holmskioldia sanguineaSteroid / sterol · FKblast+hmm High 37.1%53.1
PLBA_c27190_g1_i2_len_683
Plectranthus barbatusSteroid / sterol · FKblast+hmm High 64.2%47.4
PEBA_c15780_g1_i1_len_419
Petraeovitex bambusetoriumSteroid / sterol · FKblast+hmm High 75.0%30.8
Pat_B28G000900.m1
Pogostemon cablinSteroid / sterol · FKblast+hmm Medium 80.7%644.1
Pat_B13G134300.m1
Pogostemon cablinSteroid / sterol · FKblast+hmm Medium 62.2%31.6
PLBA_c46830_g3_i1_len_607
Plectranthus barbatusSteroid / sterol · FKblast+hmm Medium 100.0%26.3
30:ILLG11G267.61m1
Isodon lophanthoidesSteroid / sterol · FKblast Medium 61.3%—
384188.g1.t1
Ocimum basilicumSteroid / sterol · FKblast Medium 62.7%—
386050.g90.t1
Ocimum basilicumSteroid / sterol · FKblast Medium 62.7%—
AG34_scaffold2_16430T
Agastache rugosaSteroid / sterol · FKblast Medium 70.4%—
AGFO_c20227_g1_i3_len_3560
Agastache foeniculumSteroid / sterol · FKblast Medium 72.9%—
AJRE_c37725_g1_i1_len_2847
Ajuga reptansSteroid / sterol · FKblast Medium 64.9%—
BAPS_c27006_g1_i1_len_2038
Ballota pseudodictamnusSteroid / sterol · FKblast Medium 68.6%—
CAame08G0035060.v1.94
Callicarpa americanaSteroid / sterol · FKblast Medium 66.9%—
CLBU_c42290_g1_i3_len_2889
Clerodendrum bungeiSteroid / sterol · FKblast Medium 74.4%—
COCA_c73465_g2_i3_len_1947
Collinsonia canadensisSteroid / sterol · FKblast Medium 73.7%—