LamiOmicsDB Lamiaceae Multi-Omics Database
v1 808 species · 3 phylogenies · 6,313 sequences

Pathway-family scientific record

HYD1

HYD1 enzyme-family module

This module includes PlantSME enzyme-family assignments and traceable candidate protein identifiers from genome-derived or transcriptome-derived protein sets.

Browse candidatesCompare speciesCSV
Stable locus plantsmeSteroid and sterol biosynthesis
Public candidate IDs
242
Species with candidates
80
Species with assignments
80
Source assignments
242
Gene-tree candidates
0
Motif candidates
0

Evidence profile

Available evidence layers

◆Candidate identifiers242 public species-linked identifiers can be inspected.
GTGene-tree workflow0 comparable source candidates; 0 high-confidence source calls.
MMotif-screen proxy0 motif-screen candidates; 0 with all required motif proxies.
100 kbLocal clustering proxy0 clusters across 0 species; maximum cluster size 0.

Comparative signature

Lamiaceae comparison fields

Rate delta
Not calculated
Prevalence delta
Not calculated
Comparable source
PlantSME family assignments
Comparable source count
242
Public candidate count
242
Evidence mode
plantsme

Species coverage

Assignment and locus coverage by species

Source family counts and public candidate identifiers are shown in separate columns.

SpeciesEvidence stateSource countCandidate IDsExpression
Pogostemon cablinLamioideae · Pogostemon Stable locus 1111 Available
Teucrium marumAjugoideae · Teucrium Stable locus 1010 No matrix
Salvia splendensNepetoideae · Salvia Stable locus 99 No matrix
Hyssopus officinalisNepetoideae · Hyssopus Stable locus 88 No matrix
Nepeta catariaNepetoideae · Nepeta Stable locus 88 Available
Teucrium chamaedrysAjugoideae · Teucrium Stable locus 88 No matrix
Callicarpa americanaCallicarpoideae · Callicarpa Stable locus 77 No matrix
Ocimum basilicumNepetoideae · Ocimum Stable locus 55 Available
Phlomoides rotataLamioideae · Phlomoides Stable locus 55 No matrix
Ajuga decumbensAjugoideae · Ajuga Stable locus 44 No matrix
Ajuga reptansAjugoideae · Ajuga Stable locus 44 No matrix
Clerodendrum bungeiAjugoideae · Clerodendrum Stable locus 44 No matrix
Clinopodium barosmumNepetoideae · Clinopodium Stable locus 44 No matrix
Elsholtzia splendensNepetoideae · Elsholtzia Stable locus 44 No matrix
Glechoma longitubaNepetoideae · Glechoma Stable locus 44 No matrix
Isodon lophanthoidesNepetoideae · Isodon Stable locus 44 No matrix
Salvia rosmarinusNepetoideae · Salvia Stable locus 44 Available
Agastache rugosaNepetoideae · Agastache Stable locus 33 No matrix
Cornutia pyramidataPremnoideae · Cornutia Stable locus 33 No matrix
Isodon serraNepetoideae · Isodon Stable locus 33 No matrix
Leonurus sibiricusLamioideae · Leonurus Stable locus 33 No matrix
Mentha longifoliaNepetoideae · Mentha Stable locus 33 Available
Nepeta mussiniiNepetoideae · Nepeta Stable locus 33 Available
Origanum vulgareNepetoideae · Origanum Stable locus 33 No matrix
Perilla frutescensNepetoideae · Perilla Stable locus 33 No matrix
Phlomis fruticosaLamioideae · Phlomis Stable locus 33 No matrix
Prostanthera lasianthosProstantheroideae · Prostanthera Stable locus 33 No matrix
Prunella vulgarisNepetoideae · Prunella Stable locus 33 No matrix
Schizonepeta tenuifoliaNepetoideae · Schizonepeta Stable locus 33 No matrix
Scutellaria baicalensisScutellarioideae · Scutellaria Stable locus 33 No matrix
Stenogyne calaminthoidesLamioideae · Stenogyne Stable locus 33 No matrix
Tectona grandisTectonoideae · Tectona Stable locus 33 Available
Thymus vulgarisNepetoideae · Thymus Stable locus 33 No matrix
Agastache foeniculumNepetoideae · Agastache Stable locus 22 No matrix
Ballota pseudodictamnusLamioideae · Ballota Stable locus 22 No matrix
Callicarpa nudifloraCallicarpoideae · Callicarpa Stable locus 22 No matrix
Clinopodium gracileNepetoideae · Clinopodium Stable locus 22 No matrix
Collinsonia canadensisNepetoideae · Collinsonia Stable locus 22 No matrix
Congea tomentosaSymphorematoideae · Congea Stable locus 22 No matrix
Dracocephalum rupestreNepetoideae · Dracocephalum Stable locus 22 No matrix
Drepanocaryum sewerzowiiNepetoideae · Drepanocaryum Stable locus 22 No matrix
Glechoma hederaceaNepetoideae · Glechoma Stable locus 22 No matrix
Gmelina philippensisPremnoideae · Gmelina Stable locus 22 No matrix
Holmskioldia sanguineaScutellarioideae · Holmskioldia Stable locus 22 No matrix
Hyptis suaveolensNepetoideae · Hyptis Stable locus 22 No matrix
Lamium albumLamioideae · Lamium Stable locus 22 No matrix
Leonotis leonurusLamioideae · Leonotis Stable locus 22 No matrix
Leonurus cardiacaLamioideae · Leonurus Stable locus 22 No matrix
Leonurus japonicusLamioideae · Leonurus Stable locus 22 No matrix
Lycopus americanusNepetoideae · Lycopus Stable locus 22 No matrix
Marmoritis complanataNepetoideae · Marmoritis Stable locus 22 No matrix
Marrubium vulgareLamioideae · Marrubium Stable locus 22 No matrix
Melissa officinalisNepetoideae · Melissa Stable locus 22 No matrix
Mentha spicataNepetoideae · Mentha Stable locus 22 No matrix
Mentha x piperitaNepetoideae · Mentha Stable locus 22 No matrix
Monarda didymaNepetoideae · Monarda Stable locus 22 No matrix
Mosla chinensisNepetoideae · Mosla Stable locus 22 No matrix
Mosla soochowensisNepetoideae · Mosla Stable locus 22 No matrix
Ocimum tenuiflorumNepetoideae · Ocimum Stable locus 22 No matrix
Origanum majoranaNepetoideae · Origanum Stable locus 22 No matrix
Perilla citriodoraNepetoideae · Perilla Stable locus 22 No matrix
Perilla frutescens var. hirtellaNepetoideae · Perilla Stable locus 22 No matrix
Perovskia atriplicifoliaNepetoideae · Perovskia Stable locus 22 No matrix
Petraeovitex bambusetoriumPeronematoideae · Petraeovitex Stable locus 22 No matrix
Plectranthus barbatusNepetoideae · Plectranthus Stable locus 22 No matrix
Rotheca myricoidesAjugoideae · Rotheca Stable locus 22 No matrix
Salvia bowleyanaNepetoideae · Salvia Stable locus 22 No matrix
Salvia divinorumNepetoideae · Salvia Stable locus 22 No matrix
Salvia miltiorrhizaNepetoideae · Salvia Stable locus 22 Available
Salvia officinalisNepetoideae · Salvia Stable locus 22 No matrix
Salvia sclareaNepetoideae · Salvia Stable locus 22 No matrix
Scutellaria barbataScutellarioideae · Scutellaria Stable locus 22 No matrix
Stachys officinalisLamioideae · Stachys Stable locus 22 No matrix
Teucrium canadenseAjugoideae · Teucrium Stable locus 22 No matrix
Thymus quinquecostatusNepetoideae · Thymus Stable locus 22 No matrix
Vitex agnus-castusViticoideae · Vitex Stable locus 22 No matrix
Westringia fruticosaProstantheroideae · Westringia Stable locus 22 No matrix
Lavandula angustifoliaNepetoideae · Lavandula Stable locus 11 No matrix
Premna microphyllaPremnoideae · Premna Stable locus 11 No matrix
Salvia hispanicaNepetoideae · Salvia Stable locus 11 No matrix

Candidate records

Traceable candidate identifiers

Filter and inspect candidate identifiers for this family.

Clear
Candidate IDSpeciesPathway / familyEvidenceConfidenceIdentityHMM score
KAL8525954.1
Phlomoides rotataSteroid / sterol · HYD1blast+hmm High 73.3%207.6
COPY_c73364_g1_i1_len_1360
Cornutia pyramidataSteroid / sterol · HYD1blast+hmm High 66.7%206.9
22:ILLG12G39.65m1
Isodon lophanthoidesSteroid / sterol · HYD1blast+hmm High 59.1%198.2
WEFR_c36479_g1_i1_len_1255
Westringia fruticosaSteroid / sterol · HYD1blast+hmm High 73.0%197.7
Roff3936850478650
Salvia rosmarinusSteroid / sterol · HYD1blast+hmm High 70.3%196.2
g33661.t1.2.5b2d4a2e
Nepeta catariaSteroid / sterol · HYD1blast+hmm High 76.2%195.1
g23981.t1
Nepeta catariaSteroid / sterol · HYD1blast+hmm High 76.2%194.8
g30337.t1.2.5b43bdbd
Hyssopus officinalisSteroid / sterol · HYD1blast+hmm High 74.8%194.2
HYSU_c25410_g1_i2_len_1062
Hyptis suaveolensSteroid / sterol · HYD1blast+hmm High 72.1%191.9
CLBU_c42468_g1_i2_len_1096
Clerodendrum bungeiSteroid / sterol · HYD1blast+hmm High 67.4%190.2
ROMY_c75269_g2_i2_len_953
Rotheca myricoidesSteroid / sterol · HYD1blast+hmm High 70.2%189.1
Stenogyne_calaminthoides__EVM_prediction_HiC_scaffold_38.1540.mRNA1
Stenogyne calaminthoidesSteroid / sterol · HYD1blast+hmm High 69.0%179.9
evm.model.chr3.1439
Prunella vulgarisSteroid / sterol · HYD1blast+hmm High 72.5%170.0
PRLA_c60370_g2_i1_len_322
Prostanthera lasianthosSteroid / sterol · HYD1blast+hmm High 67.0%143.7
PRLA_c55854_g1_i2_len_1040
Prostanthera lasianthosSteroid / sterol · HYD1blast+hmm High 65.2%132.8
CLBU_c29166_g1_i1_len_578
Clerodendrum bungeiSteroid / sterol · HYD1blast+hmm High 66.7%121.4
AJRE_c28172_g1_i1_len_265
Ajuga reptansSteroid / sterol · HYD1blast+hmm High 62.5%121.2
AJRE_c36109_g1_i1_len_485
Ajuga reptansSteroid / sterol · HYD1blast+hmm High 62.3%112.2
tectona_grandis_TgUn821g00010.t1
Tectona grandisSteroid / sterol · HYD1blast+hmm High 46.7%104.3
COPY_c110657_g1_i1_len_349
Cornutia pyramidataSteroid / sterol · HYD1blast+hmm High 52.3%77.0
Pat_A22G089800.m1
Pogostemon cablinSteroid / sterol · HYD1blast+hmm High 48.0%53.3
1908.g55.t1
Ocimum basilicumSteroid / sterol · HYD1blast+hmm High 61.7%52.2
Pat_A16G124100.m1
Pogostemon cablinSteroid / sterol · HYD1blast+hmm High 53.2%41.4
Pat_B16G111800.m1
Pogostemon cablinSteroid / sterol · HYD1blast+hmm High 51.9%40.2
g5959.t1
Nepeta mussiniiSteroid / sterol · HYD1blast+hmm Medium 72.6%270.0
380110.g5.t1
Ocimum basilicumSteroid / sterol · HYD1blast+hmm Medium 72.2%118.5
PHFR_c6478_g1_i1_len_387
Phlomis fruticosaSteroid / sterol · HYD1blast Medium 44.3%—
Sbow04G0045840.1
Salvia bowleyanaSteroid / sterol · HYD1hmm Medium —60.4
Pat_B03G092700.m1
Pogostemon cablinSteroid / sterol · HYD1hmm Medium —59.6
Pat_A04G099700.m1
Pogostemon cablinSteroid / sterol · HYD1hmm Medium —58.6
HYSU_c32499_g1_i1_len_1854
Hyptis suaveolensSteroid / sterol · HYD1hmm Medium —58.2
Pat_A03G097500.m1
Pogostemon cablinSteroid / sterol · HYD1hmm Medium —58.1
8:ILLG9G255.78m1
Isodon lophanthoidesSteroid / sterol · HYD1hmm Medium —57.5
GLHE_c69295_g1_i2_len_1835
Glechoma hederaceaSteroid / sterol · HYD1hmm Medium —57.5
evm.model.ptg000008l.615
Isodon serraSteroid / sterol · HYD1hmm Medium —57.5
KAL1559980.1
Salvia divinorumSteroid / sterol · HYD1hmm Medium —57.3
PLBA_c38113_g1_i1_len_1868
Plectranthus barbatusSteroid / sterol · HYD1hmm Medium —57.3
Pat_B04G095100.m1
Pogostemon cablinSteroid / sterol · HYD1hmm Medium —56.9
evm.model.chr2.1572
Prunella vulgarisSteroid / sterol · HYD1hmm Medium —56.9
Smil05G0009200.1.v1.484
Salvia miltiorrhizaSteroid / sterol · HYD1hmm Medium —56.7
LELE_c34404_g1_i1_len_1815
Leonotis leonurusSteroid / sterol · HYD1hmm Medium —56.4
Stenogyne_calaminthoides__EVM_prediction_HiC_scaffold_3.1756.mRNA1
Stenogyne calaminthoidesSteroid / sterol · HYD1hmm Medium —56.4
GMPH_c27749_g1_i1_len_1748
Gmelina philippensisSteroid / sterol · HYD1hmm Medium —55.9
g5629.t1.3.5b43bdc3
Hyssopus officinalisSteroid / sterol · HYD1hmm Medium —55.9
LAAN_c55300_g1_i2_len_1838
Lavandula angustifoliaSteroid / sterol · HYD1hmm Medium —55.8
g5629.t1
Hyssopus officinalisSteroid / sterol · HYD1hmm Medium —55.8
PEBA_c33603_g1_i2_len_2309
Petraeovitex bambusetoriumSteroid / sterol · HYD1hmm Medium —55.7
COTO_c27362_g1_i3_len_2153
Congea tomentosaSteroid / sterol · HYD1hmm Medium —55.6
Dru_5G0010310.1
Dracocephalum rupestreSteroid / sterol · HYD1hmm Medium —55.3
XP_041991033.1
Salvia splendensSteroid / sterol · HYD1hmm Medium —55.2