LamiOmicsDB Lamiaceae Multi-Omics Database
v1 808 species · 3 phylogenies · 6,313 sequences

Evidence-oriented pathway catalogue

Pathway Atlas

Browse six pathway classes and 111 pathway-family modules. Concrete candidate identifiers remain visually distinct from family-level reference summaries.

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Pathway classes
6
Family modules
111
Stable-locus modules
105
Reference-only modules
6
Public pathway species
80
Candidate records
173,329

Pathway classes

Browse by biological module

View category index
Terpenoid biosynthesisReference-library modules associated with isoprenoid precursor formation, terpene synthases, tailoring enzymes and glycosylation. 22 families33,748 records22 stable modules Phenylpropanoid biosynthesisReference-library modules spanning the core phenylpropanoid route, lignin-related enzymes and oxidative polymerisation families. 13 families42,077 records13 stable modules Rosmarinic-acid biosynthesisReference-library modules used to screen candidate families associated with rosmarinic-acid biosynthetic context. 7 families97 records1 stable modules Flavonoid biosynthesisReference-library modules associated with flavonoid backbone formation, reduction, oxidation and glycosylation. 16 families31,304 records16 stable modules Alkaloid-related biosynthesisReference-library modules used for broad alkaloid-related enzyme-family screening across compatible proteomes. 34 families44,083 records34 stable modules Steroid and sterol biosynthesisReference-library modules associated with sterol and brassinosteroid-related biosynthetic enzyme families. 19 families22,020 records19 stable modules

Family catalogue

All pathway-family modules

111 modules match the current filters.

111 modules
FamilyPathwayEvidence stateEvidence modeSpeciesCandidatesSource assignmentsOpen
AACTAcetyl-CoA C-acetyltransferase family Terpenoid Stable locus plantsme 80 450 450
BAHDBAHD acyltransferase family Terpenoid Stable locus plantsme 80 4,000 27,705
CMK_IspECMK / IspE enzyme-family module Terpenoid Stable locus plantsme 80 112 112
CYP71Cytochrome P450 CYP71 family Terpenoid Stable locus plantsme 80 2,610 2,911
CYP76Cytochrome P450 CYP76 family Terpenoid Stable locus plantsme 80 4,000 15,246
DXR1-deoxy-D-xylulose 5-phosphate reductoisomerase family Terpenoid Stable locus plantsme 80 140 140
DXS1-deoxy-D-xylulose 5-phosphate synthase family Terpenoid Stable locus plantsme 80 1,506 1,535
FPPSFarnesyl diphosphate synthase family Terpenoid Stable locus plantsme 80 4,000 80,191
GGPPSGeranylgeranyl diphosphate synthase family Terpenoid Stable locus plantsme 79 227 227
GPPSGeranyl diphosphate synthase family Terpenoid Stable locus plantsme 80 734 734
HDR_IspHHDR / IspH enzyme-family module Terpenoid Stable locus plantsme 80 536 544
HDS_IspGHDS / IspG enzyme-family module Terpenoid Stable locus plantsme 80 2,094 2,185
HMGR3-hydroxy-3-methylglutaryl-CoA reductase family Terpenoid Stable locus plantsme 80 870 880
HMGS3-hydroxy-3-methylglutaryl-CoA synthase family Terpenoid Stable locus plantsme 80 138 138
IDIIsopentenyl-diphosphate isomerase family Terpenoid Stable locus plantsme 80 2,633 3,073
MCT_IspDMCT / IspD enzyme-family module Terpenoid Stable locus plantsme 77 114 114
MDS_IspFMDS / IspF enzyme-family module Terpenoid Stable locus plantsme 78 139 139
MVDMVD enzyme-family module Terpenoid Stable locus plantsme 80 408 408
MVKMVK enzyme-family module Terpenoid Stable locus plantsme 80 146 146
PMKPMK enzyme-family module Terpenoid Stable locus plantsme 5 5 5
TPSTerpene synthase family Terpenoid Stable locus plantsme 80 4,886 7,439
UGTUDP-dependent glycosyltransferase family Terpenoid Stable locus plantsme 80 4,000 39,651
4CL4-coumarate--CoA ligase family Phenylpropanoid Stable locus plantsme 80 3,998 7,290
C3H_CYP98Ap-coumaroyl-shikimate/quinate 3-hydroxylase (CYP98A) family Phenylpropanoid Stable locus plantsme 80 3,953 6,818
C4H_CYP73ACinnamate 4-hydroxylase (CYP73A) family Phenylpropanoid Stable locus plantsme 80 2,602 3,010
CADCinnamyl-alcohol dehydrogenase family Phenylpropanoid Stable locus plantsme 80 3,987 9,684
CCRCinnamoyl-CoA reductase family Phenylpropanoid Stable locus plantsme 80 4,000 10,055
CCoAOMTCaffeoyl-CoA O-methyltransferase family Phenylpropanoid Stable locus plantsme 80 2,210 2,527
COMTCaffeic-acid O-methyltransferase family Phenylpropanoid Stable locus plantsme 80 2,593 3,030
CSECaffeoyl shikimate esterase family Phenylpropanoid Stable locus plantsme 80 3,766 5,346
F5H_CYP84AF5H / CYP84A enzyme-family module Phenylpropanoid Stable locus plantsme 80 1,274 1,455
HCTHydroxycinnamoyl-CoA shikimate/quinate transferase family Phenylpropanoid Stable locus plantsme 80 3,979 11,417
LACLAC enzyme-family module Phenylpropanoid Stable locus plantsme 80 4,000 10,870
PALPhenylalanine ammonia-lyase family Phenylpropanoid Stable locus plantsme 71 1,715 2,467
PODClass III peroxidase family Phenylpropanoid Stable locus plantsme 80 4,000 11,348
4CL4-coumarate--CoA ligase family Rosmarinic acid Reference-only family count 17 0 1,824
C4HCinnamate 4-hydroxylase family Rosmarinic acid Reference-only family count 17 0 6,061
CPRCytochrome P450 reductase family Rosmarinic acid Reference-only family count 17 0 1,033
HPPRHydroxyphenylpyruvate reductase family Rosmarinic acid Reference-only family count 17 0 1,163
PALPhenylalanine ammonia-lyase family Rosmarinic acid Stable locus gene tree 17 97 201
RASRosmarinic-acid synthase family Rosmarinic acid Reference-only family count 17 0 1,977
TATTyrosine aminotransferase family Rosmarinic acid Reference-only family count 17 0 3,130
4CL4-coumarate--CoA ligase family Flavonoid Stable locus plantsme 80 3,999 7,323
ANRANR enzyme-family module Flavonoid Stable locus plantsme 80 542 542
ANS_LDOXANS / LDOX enzyme-family module Flavonoid Stable locus plantsme 80 2,456 2,765
C4HCinnamate 4-hydroxylase family Flavonoid Stable locus plantsme 80 3,123 3,978
CHIChalcone isomerase family Flavonoid Stable locus plantsme 80 2,860 3,243
CHSChalcone synthase family Flavonoid Stable locus plantsme 80 1,120 1,166
DFRDihydroflavonol 4-reductase family Flavonoid Stable locus plantsme 80 3,793 5,301
F35H_CYP75AF35H / CYP75A enzyme-family module Flavonoid Stable locus plantsme 80 685 685
Stable locus evidence

Concrete, traceable candidate identifiers are available for direct inspection.

Reference-only family summary

Family-level assignment counts are retained without inventing candidate locus IDs.

Evidence boundary

Computational enzyme-family candidates and genome-structure support, not validated biochemical function.