terpenoid
Terpenoid biosynthesis
- Rate / 1k
- 46.123
- Candidate records
- 356
- Stable modules
- 20
- Reference-only
- 0
Species pathway scientific record
Monarda didyma
A species-level view of family assignments, traceable candidate identifiers and any linked expression context in the current pathway evidence package.
- Lamiaceae rank
- 46
- Source assignments
- 3,860
- Public candidate records
- 1,879
- Observed modules
- 90
- High-confidence records
- 749
- Expression matrix
- Unavailable
Pathway composition
Six pathway classes
Candidate rate values are source-derived summaries; they are not pathway-completeness percentages.
phenylpropanoid
Phenylpropanoid biosynthesis
- Rate / 1k
- 21.88
- Candidate records
- 485
- Stable modules
- 13
- Reference-only
- 0
rosmarinic acid
Rosmarinic-acid biosynthesis
- Rate / 1k
- —
- Candidate records
- 0
- Stable modules
- 0
- Reference-only
- 0
flavonoid
Flavonoid biosynthesis
- Rate / 1k
- 11.057
- Candidate records
- 348
- Stable modules
- 13
- Reference-only
- 0
alkaloid
Alkaloid-related biosynthesis
- Rate / 1k
- 26.052
- Candidate records
- 461
- Stable modules
- 27
- Reference-only
- 0
- Rate / 1k
- 7.498
- Candidate records
- 229
- Stable modules
- 17
- Reference-only
- 0
Terpenoid
Terpenoid biosynthesis
356 recordsView records
Phenylpropanoid
Phenylpropanoid biosynthesis
485 recordsView records
| Family | Evidence state | Source count | Candidate IDs | Evidence mode | |
|---|---|---|---|---|---|
4CL4-coumarate--CoA ligase family | Stable locus | 81 | 50 | plantsme | |
CADCinnamyl-alcohol dehydrogenase family | Stable locus | 68 | 50 | plantsme | |
CCRCinnamoyl-CoA reductase family | Stable locus | 96 | 50 | plantsme | |
HCTHydroxycinnamoyl-CoA shikimate/quinate transferase family | Stable locus | 104 | 50 | plantsme | |
LACLAC enzyme-family module | Stable locus | 87 | 50 | plantsme | |
PODClass III peroxidase family | Stable locus | 129 | 50 | plantsme | |
C3H_CYP98Ap-coumaroyl-shikimate/quinate 3-hydroxylase (CYP98A) family | Stable locus | 45 | 45 | plantsme | |
CSECaffeoyl shikimate esterase family | Stable locus | 36 | 36 | plantsme | |
PALPhenylalanine ammonia-lyase family | Stable locus | 27 | 27 | plantsme | |
CCoAOMTCaffeoyl-CoA O-methyltransferase family | Stable locus | 20 | 20 | plantsme | |
C4H_CYP73ACinnamate 4-hydroxylase (CYP73A) family | Stable locus | 19 | 19 | plantsme | |
COMTCaffeic-acid O-methyltransferase family | Stable locus | 19 | 19 | plantsme | |
F5H_CYP84AF5H / CYP84A enzyme-family module | Stable locus | 19 | 19 | plantsme |
Rosmarinic acid
Rosmarinic-acid biosynthesis
0 recordsView records
No observed modules in this category
No family assignments are reported for this species in the current compatible source profile.
Flavonoid
Flavonoid biosynthesis
348 recordsView records
| Family | Evidence state | Source count | Candidate IDs | Evidence mode | |
|---|---|---|---|---|---|
4CL4-coumarate--CoA ligase family | Stable locus | 81 | 50 | plantsme | |
UFGTUFGT enzyme-family module | Stable locus | 46 | 46 | plantsme | |
DFRDihydroflavonol 4-reductase family | Stable locus | 42 | 42 | plantsme | |
F3HFlavanone 3-hydroxylase family | Stable locus | 36 | 36 | plantsme | |
PALPhenylalanine ammonia-lyase family | Stable locus | 34 | 34 | plantsme | |
F3H_CYP75BF3H / CYP75B enzyme-family module | Stable locus | 32 | 32 | plantsme | |
CHIChalcone isomerase family | Stable locus | 31 | 31 | plantsme | |
C4HCinnamate 4-hydroxylase family | Stable locus | 25 | 25 | plantsme | |
ANS_LDOXANS / LDOX enzyme-family module | Stable locus | 22 | 22 | plantsme | |
CHSChalcone synthase family | Stable locus | 11 | 11 | plantsme | |
IFRIFR enzyme-family module | Stable locus | 10 | 10 | plantsme | |
F35H_CYP75AF35H / CYP75A enzyme-family module | Stable locus | 5 | 5 | plantsme | |
ANRANR enzyme-family module | Stable locus | 4 | 4 | plantsme |
Alkaloid
Alkaloid-related biosynthesis
461 recordsView records
Steroid / sterol
Steroid and sterol biosynthesis
229 recordsView records
Interpretation
Evidence boundary
Stable locus
A concrete candidate identifier is provided and can be inspected.
Reference-only
A family count is available, but no locus ID is asserted for this module.
Computational candidates
Computational enzyme-family candidates and genome-structure support, not validated biochemical function.