terpenoid
Terpenoid biosynthesis
- Rate / 1k
- 51.019
- Candidate records
- 374
- Stable modules
- 21
- Reference-only
- 0
Species pathway scientific record
Clinopodium gracile
A species-level view of family assignments, traceable candidate identifiers and any linked expression context in the current pathway evidence package.
- Lamiaceae rank
- 44
- Source assignments
- 4,749
- Public candidate records
- 2,056
- Observed modules
- 91
- High-confidence records
- 950
- Expression matrix
- Unavailable
Pathway composition
Six pathway classes
Candidate rate values are source-derived summaries; they are not pathway-completeness percentages.
phenylpropanoid
Phenylpropanoid biosynthesis
- Rate / 1k
- 25.647
- Candidate records
- 525
- Stable modules
- 13
- Reference-only
- 0
rosmarinic acid
Rosmarinic-acid biosynthesis
- Rate / 1k
- —
- Candidate records
- 0
- Stable modules
- 0
- Reference-only
- 0
flavonoid
Flavonoid biosynthesis
- Rate / 1k
- 10.653
- Candidate records
- 379
- Stable modules
- 14
- Reference-only
- 0
alkaloid
Alkaloid-related biosynthesis
- Rate / 1k
- 24.25
- Candidate records
- 535
- Stable modules
- 27
- Reference-only
- 0
- Rate / 1k
- 6.911
- Candidate records
- 243
- Stable modules
- 16
- Reference-only
- 0
Terpenoid
Terpenoid biosynthesis
374 recordsView records
Phenylpropanoid
Phenylpropanoid biosynthesis
525 recordsView records
| Family | Evidence state | Source count | Candidate IDs | Evidence mode | |
|---|---|---|---|---|---|
4CL4-coumarate--CoA ligase family | Stable locus | 76 | 50 | plantsme | |
C3H_CYP98Ap-coumaroyl-shikimate/quinate 3-hydroxylase (CYP98A) family | Stable locus | 93 | 50 | plantsme | |
CADCinnamyl-alcohol dehydrogenase family | Stable locus | 91 | 50 | plantsme | |
CCRCinnamoyl-CoA reductase family | Stable locus | 110 | 50 | plantsme | |
CSECaffeoyl shikimate esterase family | Stable locus | 56 | 50 | plantsme | |
HCTHydroxycinnamoyl-CoA shikimate/quinate transferase family | Stable locus | 217 | 50 | plantsme | |
LACLAC enzyme-family module | Stable locus | 139 | 50 | plantsme | |
PODClass III peroxidase family | Stable locus | 121 | 50 | plantsme | |
C4H_CYP73ACinnamate 4-hydroxylase (CYP73A) family | Stable locus | 41 | 41 | plantsme | |
COMTCaffeic-acid O-methyltransferase family | Stable locus | 33 | 33 | plantsme | |
CCoAOMTCaffeoyl-CoA O-methyltransferase family | Stable locus | 30 | 30 | plantsme | |
F5H_CYP84AF5H / CYP84A enzyme-family module | Stable locus | 20 | 20 | plantsme | |
PALPhenylalanine ammonia-lyase family | Stable locus | 1 | 1 | plantsme |
Rosmarinic acid
Rosmarinic-acid biosynthesis
0 recordsView records
No observed modules in this category
No family assignments are reported for this species in the current compatible source profile.
Flavonoid
Flavonoid biosynthesis
379 recordsView records
| Family | Evidence state | Source count | Candidate IDs | Evidence mode | |
|---|---|---|---|---|---|
4CL4-coumarate--CoA ligase family | Stable locus | 76 | 50 | plantsme | |
C4HCinnamate 4-hydroxylase family | Stable locus | 52 | 50 | plantsme | |
F3H_CYP75BF3H / CYP75B enzyme-family module | Stable locus | 70 | 50 | plantsme | |
DFRDihydroflavonol 4-reductase family | Stable locus | 48 | 48 | plantsme | |
F3HFlavanone 3-hydroxylase family | Stable locus | 43 | 43 | plantsme | |
ANS_LDOXANS / LDOX enzyme-family module | Stable locus | 34 | 34 | plantsme | |
CHIChalcone isomerase family | Stable locus | 30 | 30 | plantsme | |
UFGTUFGT enzyme-family module | Stable locus | 30 | 30 | plantsme | |
CHSChalcone synthase family | Stable locus | 11 | 11 | plantsme | |
IFRIFR enzyme-family module | Stable locus | 11 | 11 | plantsme | |
PALPhenylalanine ammonia-lyase family | Stable locus | 8 | 8 | plantsme | |
F35H_CYP75AF35H / CYP75A enzyme-family module | Stable locus | 7 | 7 | plantsme | |
ANRANR enzyme-family module | Stable locus | 6 | 6 | plantsme | |
FNSFNS enzyme-family module | Stable locus | 1 | 1 | plantsme |
Alkaloid
Alkaloid-related biosynthesis
535 recordsView records
Steroid / sterol
Steroid and sterol biosynthesis
243 recordsView records
Interpretation
Evidence boundary
Stable locus
A concrete candidate identifier is provided and can be inspected.
Reference-only
A family count is available, but no locus ID is asserted for this module.
Computational candidates
Computational enzyme-family candidates and genome-structure support, not validated biochemical function.