terpenoid
Terpenoid biosynthesis
- Rate / 1k
- 71.389
- Candidate records
- 623
- Stable modules
- 21
- Reference-only
- 0
Species pathway scientific record
Callicarpa americana
A species-level view of family assignments, traceable candidate identifiers and any linked expression context in the current pathway evidence package.
- Lamiaceae rank
- 6
- Source assignments
- 11,046
- Public candidate records
- 2,748
- Observed modules
- 97
- High-confidence records
- 1,362
- Expression matrix
- Unavailable
Pathway composition
Six pathway classes
Candidate rate values are source-derived summaries; they are not pathway-completeness percentages.
phenylpropanoid
Phenylpropanoid biosynthesis
- Rate / 1k
- 25.987
- Candidate records
- 561
- Stable modules
- 13
- Reference-only
- 0
rosmarinic acid
Rosmarinic-acid biosynthesis
- Rate / 1k
- 20.955
- Candidate records
- 6
- Stable modules
- 1
- Reference-only
- 6
flavonoid
Flavonoid biosynthesis
- Rate / 1k
- 12.192
- Candidate records
- 481
- Stable modules
- 14
- Reference-only
- 0
alkaloid
Alkaloid-related biosynthesis
- Rate / 1k
- 32.575
- Candidate records
- 684
- Stable modules
- 26
- Reference-only
- 0
- Rate / 1k
- 12.255
- Candidate records
- 393
- Stable modules
- 16
- Reference-only
- 0
Terpenoid
Terpenoid biosynthesis
623 recordsView records
Phenylpropanoid
Phenylpropanoid biosynthesis
561 recordsView records
| Family | Evidence state | Source count | Candidate IDs | Evidence mode | |
|---|---|---|---|---|---|
4CL4-coumarate--CoA ligase family | Stable locus | 132 | 50 | plantsme | |
C3H_CYP98Ap-coumaroyl-shikimate/quinate 3-hydroxylase (CYP98A) family | Stable locus | 124 | 50 | plantsme | |
C4H_CYP73ACinnamate 4-hydroxylase (CYP73A) family | Stable locus | 69 | 50 | plantsme | |
CADCinnamyl-alcohol dehydrogenase family | Stable locus | 210 | 50 | plantsme | |
CCRCinnamoyl-CoA reductase family | Stable locus | 228 | 50 | plantsme | |
CCoAOMTCaffeoyl-CoA O-methyltransferase family | Stable locus | 61 | 50 | plantsme | |
COMTCaffeic-acid O-methyltransferase family | Stable locus | 68 | 50 | plantsme | |
CSECaffeoyl shikimate esterase family | Stable locus | 109 | 50 | plantsme | |
HCTHydroxycinnamoyl-CoA shikimate/quinate transferase family | Stable locus | 160 | 50 | plantsme | |
LACLAC enzyme-family module | Stable locus | 239 | 50 | plantsme | |
PODClass III peroxidase family | Stable locus | 226 | 50 | plantsme | |
F5H_CYP84AF5H / CYP84A enzyme-family module | Stable locus | 10 | 10 | plantsme | |
PALPhenylalanine ammonia-lyase family | Stable locus | 1 | 1 | plantsme |
Rosmarinic acid
Rosmarinic-acid biosynthesis
6 recordsView records
| Family | Evidence state | Source count | Candidate IDs | Evidence mode | |
|---|---|---|---|---|---|
PALPhenylalanine ammonia-lyase family | Stable locus | 10 | 6 | gene tree | |
4CL4-coumarate--CoA ligase family | Reference-only | 130 | 0 | family count | — |
C4HCinnamate 4-hydroxylase family | Reference-only | 598 | 0 | family count | — |
CPRCytochrome P450 reductase family | Reference-only | 111 | 0 | family count | — |
HPPRHydroxyphenylpyruvate reductase family | Reference-only | 62 | 0 | family count | — |
RASRosmarinic-acid synthase family | Reference-only | 215 | 0 | family count | — |
TATTyrosine aminotransferase family | Reference-only | 194 | 0 | family count | — |
Flavonoid
Flavonoid biosynthesis
481 recordsView records
| Family | Evidence state | Source count | Candidate IDs | Evidence mode | |
|---|---|---|---|---|---|
4CL4-coumarate--CoA ligase family | Stable locus | 131 | 50 | plantsme | |
ANS_LDOXANS / LDOX enzyme-family module | Stable locus | 70 | 50 | plantsme | |
C4HCinnamate 4-hydroxylase family | Stable locus | 81 | 50 | plantsme | |
CHIChalcone isomerase family | Stable locus | 59 | 50 | plantsme | |
DFRDihydroflavonol 4-reductase family | Stable locus | 121 | 50 | plantsme | |
F3HFlavanone 3-hydroxylase family | Stable locus | 83 | 50 | plantsme | |
F3H_CYP75BF3H / CYP75B enzyme-family module | Stable locus | 92 | 50 | plantsme | |
UFGTUFGT enzyme-family module | Stable locus | 34 | 34 | plantsme | |
IFRIFR enzyme-family module | Stable locus | 29 | 29 | plantsme | |
ANRANR enzyme-family module | Stable locus | 23 | 23 | plantsme | |
CHSChalcone synthase family | Stable locus | 17 | 17 | plantsme | |
F35H_CYP75AF35H / CYP75A enzyme-family module | Stable locus | 14 | 14 | plantsme | |
PALPhenylalanine ammonia-lyase family | Stable locus | 10 | 10 | plantsme | |
FNSFNS enzyme-family module | Stable locus | 4 | 4 | plantsme |
Alkaloid
Alkaloid-related biosynthesis
684 recordsView records
Steroid / sterol
Steroid and sterol biosynthesis
393 recordsView records
Interpretation
Evidence boundary
Stable locus
A concrete candidate identifier is provided and can be inspected.
Reference-only
A family count is available, but no locus ID is asserted for this module.
Computational candidates
Computational enzyme-family candidates and genome-structure support, not validated biochemical function.