terpenoid
Terpenoid biosynthesis
- Rate / 1k
- 59.491
- Candidate records
- 556
- Stable modules
- 21
- Reference-only
- 0
Species pathway scientific record
Salvia rosmarinus
A species-level view of family assignments, traceable candidate identifiers and any linked expression context in the current pathway evidence package.
- Lamiaceae rank
- 19
- Source assignments
- 7,966
- Public candidate records
- 2,502
- Observed modules
- 98
- High-confidence records
- 1,119
- Expression matrix
- Available
Pathway composition
Six pathway classes
Candidate rate values are source-derived summaries; they are not pathway-completeness percentages.
phenylpropanoid
Phenylpropanoid biosynthesis
- Rate / 1k
- 24.559
- Candidate records
- 537
- Stable modules
- 12
- Reference-only
- 0
rosmarinic acid
Rosmarinic-acid biosynthesis
- Rate / 1k
- 20.511
- Candidate records
- 4
- Stable modules
- 1
- Reference-only
- 6
flavonoid
Flavonoid biosynthesis
- Rate / 1k
- 12.883
- Candidate records
- 436
- Stable modules
- 14
- Reference-only
- 0
alkaloid
Alkaloid-related biosynthesis
- Rate / 1k
- 27.615
- Candidate records
- 635
- Stable modules
- 27
- Reference-only
- 0
- Rate / 1k
- 9.964
- Candidate records
- 334
- Stable modules
- 17
- Reference-only
- 0
Terpenoid
Terpenoid biosynthesis
556 recordsView records
Phenylpropanoid
Phenylpropanoid biosynthesis
537 recordsView records
| Family | Evidence state | Source count | Candidate IDs | Evidence mode | |
|---|---|---|---|---|---|
4CL4-coumarate--CoA ligase family | Stable locus | 118 | 50 | plantsme | |
C3H_CYP98Ap-coumaroyl-shikimate/quinate 3-hydroxylase (CYP98A) family | Stable locus | 112 | 50 | plantsme | |
C4H_CYP73ACinnamate 4-hydroxylase (CYP73A) family | Stable locus | 66 | 50 | plantsme | |
CADCinnamyl-alcohol dehydrogenase family | Stable locus | 120 | 50 | plantsme | |
CCRCinnamoyl-CoA reductase family | Stable locus | 185 | 50 | plantsme | |
CSECaffeoyl shikimate esterase family | Stable locus | 93 | 50 | plantsme | |
HCTHydroxycinnamoyl-CoA shikimate/quinate transferase family | Stable locus | 124 | 50 | plantsme | |
LACLAC enzyme-family module | Stable locus | 192 | 50 | plantsme | |
PODClass III peroxidase family | Stable locus | 165 | 50 | plantsme | |
CCoAOMTCaffeoyl-CoA O-methyltransferase family | Stable locus | 41 | 41 | plantsme | |
COMTCaffeic-acid O-methyltransferase family | Stable locus | 38 | 38 | plantsme | |
F5H_CYP84AF5H / CYP84A enzyme-family module | Stable locus | 8 | 8 | plantsme |
Rosmarinic acid
Rosmarinic-acid biosynthesis
4 recordsView records
| Family | Evidence state | Source count | Candidate IDs | Evidence mode | |
|---|---|---|---|---|---|
PALPhenylalanine ammonia-lyase family | Stable locus | 8 | 4 | gene tree | |
4CL4-coumarate--CoA ligase family | Reference-only | 127 | 0 | family count | — |
C4HCinnamate 4-hydroxylase family | Reference-only | 439 | 0 | family count | — |
CPRCytochrome P450 reductase family | Reference-only | 76 | 0 | family count | — |
HPPRHydroxyphenylpyruvate reductase family | Reference-only | 53 | 0 | family count | — |
RASRosmarinic-acid synthase family | Reference-only | 195 | 0 | family count | — |
TATTyrosine aminotransferase family | Reference-only | 156 | 0 | family count | — |
Flavonoid
Flavonoid biosynthesis
436 recordsView records
| Family | Evidence state | Source count | Candidate IDs | Evidence mode | |
|---|---|---|---|---|---|
4CL4-coumarate--CoA ligase family | Stable locus | 117 | 50 | plantsme | |
C4HCinnamate 4-hydroxylase family | Stable locus | 81 | 50 | plantsme | |
CHIChalcone isomerase family | Stable locus | 61 | 50 | plantsme | |
DFRDihydroflavonol 4-reductase family | Stable locus | 103 | 50 | plantsme | |
F3HFlavanone 3-hydroxylase family | Stable locus | 88 | 50 | plantsme | |
F3H_CYP75BF3H / CYP75B enzyme-family module | Stable locus | 76 | 50 | plantsme | |
ANS_LDOXANS / LDOX enzyme-family module | Stable locus | 46 | 46 | plantsme | |
UFGTUFGT enzyme-family module | Stable locus | 28 | 28 | plantsme | |
CHSChalcone synthase family | Stable locus | 17 | 17 | plantsme | |
IFRIFR enzyme-family module | Stable locus | 14 | 14 | plantsme | |
F35H_CYP75AF35H / CYP75A enzyme-family module | Stable locus | 11 | 11 | plantsme | |
ANRANR enzyme-family module | Stable locus | 10 | 10 | plantsme | |
PALPhenylalanine ammonia-lyase family | Stable locus | 8 | 8 | plantsme | |
IFSIFS enzyme-family module | Stable locus | 2 | 2 | plantsme |
Alkaloid
Alkaloid-related biosynthesis
635 recordsView records
Steroid / sterol
Steroid and sterol biosynthesis
334 recordsView records
Interpretation
Evidence boundary
Stable locus
A concrete candidate identifier is provided and can be inspected.
Reference-only
A family count is available, but no locus ID is asserted for this module.
Computational candidates
Computational enzyme-family candidates and genome-structure support, not validated biochemical function.