terpenoid
Terpenoid biosynthesis
- Rate / 1k
- 73.162
- Candidate records
- 439
- Stable modules
- 21
- Reference-only
- 0
Species pathway scientific record
Tectona grandis
A species-level view of family assignments, traceable candidate identifiers and any linked expression context in the current pathway evidence package.
- Lamiaceae rank
- 1
- Source assignments
- 6,847
- Public candidate records
- 2,329
- Observed modules
- 101
- High-confidence records
- 1,088
- Expression matrix
- Available
Pathway composition
Six pathway classes
Candidate rate values are source-derived summaries; they are not pathway-completeness percentages.
phenylpropanoid
Phenylpropanoid biosynthesis
- Rate / 1k
- 29.873
- Candidate records
- 555
- Stable modules
- 13
- Reference-only
- 0
rosmarinic acid
Rosmarinic-acid biosynthesis
- Rate / 1k
- 26.272
- Candidate records
- 8
- Stable modules
- 1
- Reference-only
- 6
flavonoid
Flavonoid biosynthesis
- Rate / 1k
- 14.092
- Candidate records
- 427
- Stable modules
- 15
- Reference-only
- 0
alkaloid
Alkaloid-related biosynthesis
- Rate / 1k
- 37.552
- Candidate records
- 601
- Stable modules
- 29
- Reference-only
- 0
- Rate / 1k
- 11.645
- Candidate records
- 299
- Stable modules
- 16
- Reference-only
- 0
Terpenoid
Terpenoid biosynthesis
439 recordsView records
Phenylpropanoid
Phenylpropanoid biosynthesis
555 recordsView records
| Family | Evidence state | Source count | Candidate IDs | Evidence mode | |
|---|---|---|---|---|---|
4CL4-coumarate--CoA ligase family | Stable locus | 81 | 50 | plantsme | |
C3H_CYP98Ap-coumaroyl-shikimate/quinate 3-hydroxylase (CYP98A) family | Stable locus | 80 | 50 | plantsme | |
C4H_CYP73ACinnamate 4-hydroxylase (CYP73A) family | Stable locus | 55 | 50 | plantsme | |
CADCinnamyl-alcohol dehydrogenase family | Stable locus | 146 | 50 | plantsme | |
CCRCinnamoyl-CoA reductase family | Stable locus | 127 | 50 | plantsme | |
CCoAOMTCaffeoyl-CoA O-methyltransferase family | Stable locus | 56 | 50 | plantsme | |
CSECaffeoyl shikimate esterase family | Stable locus | 54 | 50 | plantsme | |
HCTHydroxycinnamoyl-CoA shikimate/quinate transferase family | Stable locus | 151 | 50 | plantsme | |
LACLAC enzyme-family module | Stable locus | 143 | 50 | plantsme | |
PODClass III peroxidase family | Stable locus | 114 | 50 | plantsme | |
COMTCaffeic-acid O-methyltransferase family | Stable locus | 36 | 36 | plantsme | |
F5H_CYP84AF5H / CYP84A enzyme-family module | Stable locus | 18 | 18 | plantsme | |
PALPhenylalanine ammonia-lyase family | Stable locus | 1 | 1 | plantsme |
Rosmarinic acid
Rosmarinic-acid biosynthesis
8 recordsView records
| Family | Evidence state | Source count | Candidate IDs | Evidence mode | |
|---|---|---|---|---|---|
PALPhenylalanine ammonia-lyase family | Stable locus | 10 | 8 | gene tree | |
4CL4-coumarate--CoA ligase family | Reference-only | 79 | 0 | family count | — |
C4HCinnamate 4-hydroxylase family | Reference-only | 475 | 0 | family count | — |
CPRCytochrome P450 reductase family | Reference-only | 40 | 0 | family count | — |
HPPRHydroxyphenylpyruvate reductase family | Reference-only | 70 | 0 | family count | — |
RASRosmarinic-acid synthase family | Reference-only | 134 | 0 | family count | — |
TATTyrosine aminotransferase family | Reference-only | 126 | 0 | family count | — |
Flavonoid
Flavonoid biosynthesis
427 recordsView records
| Family | Evidence state | Source count | Candidate IDs | Evidence mode | |
|---|---|---|---|---|---|
4CL4-coumarate--CoA ligase family | Stable locus | 81 | 50 | plantsme | |
C4HCinnamate 4-hydroxylase family | Stable locus | 70 | 50 | plantsme | |
DFRDihydroflavonol 4-reductase family | Stable locus | 67 | 50 | plantsme | |
F3HFlavanone 3-hydroxylase family | Stable locus | 52 | 50 | plantsme | |
F3H_CYP75BF3H / CYP75B enzyme-family module | Stable locus | 54 | 50 | plantsme | |
UFGTUFGT enzyme-family module | Stable locus | 41 | 41 | plantsme | |
CHIChalcone isomerase family | Stable locus | 40 | 40 | plantsme | |
ANS_LDOXANS / LDOX enzyme-family module | Stable locus | 39 | 39 | plantsme | |
IFRIFR enzyme-family module | Stable locus | 22 | 22 | plantsme | |
CHSChalcone synthase family | Stable locus | 12 | 12 | plantsme | |
PALPhenylalanine ammonia-lyase family | Stable locus | 10 | 10 | plantsme | |
F35H_CYP75AF35H / CYP75A enzyme-family module | Stable locus | 6 | 6 | plantsme | |
ANRANR enzyme-family module | Stable locus | 5 | 5 | plantsme | |
FLSFlavonol synthase family | Stable locus | 1 | 1 | plantsme | |
FNSFNS enzyme-family module | Stable locus | 1 | 1 | plantsme |
Alkaloid
Alkaloid-related biosynthesis
601 recordsView records
Steroid / sterol
Steroid and sterol biosynthesis
299 recordsView records
Interpretation
Evidence boundary
Stable locus
A concrete candidate identifier is provided and can be inspected.
Reference-only
A family count is available, but no locus ID is asserted for this module.
Computational candidates
Computational enzyme-family candidates and genome-structure support, not validated biochemical function.