terpenoid
Terpenoid biosynthesis
- Rate / 1k
- 53.593
- Candidate records
- 470
- Stable modules
- 21
- Reference-only
- 0
Species pathway scientific record
Phlomoides rotata
A species-level view of family assignments, traceable candidate identifiers and any linked expression context in the current pathway evidence package.
- Lamiaceae rank
- 38
- Source assignments
- 7,053
- Public candidate records
- 2,422
- Observed modules
- 104
- High-confidence records
- 1,167
- Expression matrix
- Unavailable
Pathway composition
Six pathway classes
Candidate rate values are source-derived summaries; they are not pathway-completeness percentages.
phenylpropanoid
Phenylpropanoid biosynthesis
- Rate / 1k
- 21.94
- Candidate records
- 535
- Stable modules
- 13
- Reference-only
- 0
rosmarinic acid
Rosmarinic-acid biosynthesis
- Rate / 1k
- 9.132
- Candidate records
- 0
- Stable modules
- 0
- Reference-only
- 7
flavonoid
Flavonoid biosynthesis
- Rate / 1k
- 12.305
- Candidate records
- 440
- Stable modules
- 15
- Reference-only
- 0
alkaloid
Alkaloid-related biosynthesis
- Rate / 1k
- 29.466
- Candidate records
- 626
- Stable modules
- 29
- Reference-only
- 0
- Rate / 1k
- 10.022
- Candidate records
- 351
- Stable modules
- 19
- Reference-only
- 0
Terpenoid
Terpenoid biosynthesis
470 recordsView records
Phenylpropanoid
Phenylpropanoid biosynthesis
535 recordsView records
| Family | Evidence state | Source count | Candidate IDs | Evidence mode | |
|---|---|---|---|---|---|
4CL4-coumarate--CoA ligase family | Stable locus | 119 | 50 | plantsme | |
C3H_CYP98Ap-coumaroyl-shikimate/quinate 3-hydroxylase (CYP98A) family | Stable locus | 87 | 50 | plantsme | |
CADCinnamyl-alcohol dehydrogenase family | Stable locus | 139 | 50 | plantsme | |
CCRCinnamoyl-CoA reductase family | Stable locus | 178 | 50 | plantsme | |
CSECaffeoyl shikimate esterase family | Stable locus | 65 | 50 | plantsme | |
HCTHydroxycinnamoyl-CoA shikimate/quinate transferase family | Stable locus | 103 | 50 | plantsme | |
LACLAC enzyme-family module | Stable locus | 163 | 50 | plantsme | |
PODClass III peroxidase family | Stable locus | 145 | 50 | plantsme | |
C4H_CYP73ACinnamate 4-hydroxylase (CYP73A) family | Stable locus | 49 | 49 | plantsme | |
COMTCaffeic-acid O-methyltransferase family | Stable locus | 44 | 44 | plantsme | |
CCoAOMTCaffeoyl-CoA O-methyltransferase family | Stable locus | 20 | 20 | plantsme | |
F5H_CYP84AF5H / CYP84A enzyme-family module | Stable locus | 20 | 20 | plantsme | |
PALPhenylalanine ammonia-lyase family | Stable locus | 2 | 2 | plantsme |
Rosmarinic acid
Rosmarinic-acid biosynthesis
0 recordsView records
| Family | Evidence state | Source count | Candidate IDs | Evidence mode | |
|---|---|---|---|---|---|
4CL4-coumarate--CoA ligase family | Reference-only | 119 | 0 | family count | — |
C4HCinnamate 4-hydroxylase family | Reference-only | 37 | 0 | family count | — |
CPRCytochrome P450 reductase family | Reference-only | 67 | 0 | family count | — |
HPPRHydroxyphenylpyruvate reductase family | Reference-only | 84 | 0 | family count | — |
PALPhenylalanine ammonia-lyase family | Reference-only | 2 | 0 | gene tree | — |
RASRosmarinic-acid synthase family | Reference-only | 18 | 0 | family count | — |
TATTyrosine aminotransferase family | Reference-only | 145 | 0 | family count | — |
Flavonoid
Flavonoid biosynthesis
440 recordsView records
| Family | Evidence state | Source count | Candidate IDs | Evidence mode | |
|---|---|---|---|---|---|
4CL4-coumarate--CoA ligase family | Stable locus | 119 | 50 | plantsme | |
C4HCinnamate 4-hydroxylase family | Stable locus | 72 | 50 | plantsme | |
CHIChalcone isomerase family | Stable locus | 58 | 50 | plantsme | |
DFRDihydroflavonol 4-reductase family | Stable locus | 97 | 50 | plantsme | |
F3HFlavanone 3-hydroxylase family | Stable locus | 72 | 50 | plantsme | |
F3H_CYP75BF3H / CYP75B enzyme-family module | Stable locus | 78 | 50 | plantsme | |
UFGTUFGT enzyme-family module | Stable locus | 47 | 47 | plantsme | |
ANS_LDOXANS / LDOX enzyme-family module | Stable locus | 42 | 42 | plantsme | |
CHSChalcone synthase family | Stable locus | 18 | 18 | plantsme | |
IFRIFR enzyme-family module | Stable locus | 10 | 10 | plantsme | |
F35H_CYP75AF35H / CYP75A enzyme-family module | Stable locus | 9 | 9 | plantsme | |
PALPhenylalanine ammonia-lyase family | Stable locus | 7 | 7 | plantsme | |
ANRANR enzyme-family module | Stable locus | 5 | 5 | plantsme | |
FNSFNS enzyme-family module | Stable locus | 1 | 1 | plantsme | |
IFSIFS enzyme-family module | Stable locus | 1 | 1 | plantsme |
Alkaloid
Alkaloid-related biosynthesis
626 recordsView records
Steroid / sterol
Steroid and sterol biosynthesis
351 recordsView records
Interpretation
Evidence boundary
Stable locus
A concrete candidate identifier is provided and can be inspected.
Reference-only
A family count is available, but no locus ID is asserted for this module.
Computational candidates
Computational enzyme-family candidates and genome-structure support, not validated biochemical function.