terpenoid
Terpenoid biosynthesis
- Rate / 1k
- 61.016
- Candidate records
- 912
- Stable modules
- 22
- Reference-only
- 0
Species pathway scientific record
Pogostemon cablin
A species-level view of family assignments, traceable candidate identifiers and any linked expression context in the current pathway evidence package.
- Lamiaceae rank
- 13
- Source assignments
- 21,033
- Public candidate records
- 3,726
- Observed modules
- 106
- High-confidence records
- 1,807
- Expression matrix
- Available
Pathway composition
Six pathway classes
Candidate rate values are source-derived summaries; they are not pathway-completeness percentages.
phenylpropanoid
Phenylpropanoid biosynthesis
- Rate / 1k
- 28.518
- Candidate records
- 650
- Stable modules
- 13
- Reference-only
- 0
rosmarinic acid
Rosmarinic-acid biosynthesis
- Rate / 1k
- 10.8
- Candidate records
- 36
- Stable modules
- 1
- Reference-only
- 6
flavonoid
Flavonoid biosynthesis
- Rate / 1k
- 15.067
- Candidate records
- 613
- Stable modules
- 15
- Reference-only
- 0
alkaloid
Alkaloid-related biosynthesis
- Rate / 1k
- 30.52
- Candidate records
- 956
- Stable modules
- 31
- Reference-only
- 0
- Rate / 1k
- 12.93
- Candidate records
- 559
- Stable modules
- 18
- Reference-only
- 0
Terpenoid
Terpenoid biosynthesis
912 recordsView records
Phenylpropanoid
Phenylpropanoid biosynthesis
650 recordsView records
| Family | Evidence state | Source count | Candidate IDs | Evidence mode | |
|---|---|---|---|---|---|
4CL4-coumarate--CoA ligase family | Stable locus | 290 | 50 | plantsme | |
C3H_CYP98Ap-coumaroyl-shikimate/quinate 3-hydroxylase (CYP98A) family | Stable locus | 264 | 50 | plantsme | |
C4H_CYP73ACinnamate 4-hydroxylase (CYP73A) family | Stable locus | 115 | 50 | plantsme | |
CADCinnamyl-alcohol dehydrogenase family | Stable locus | 461 | 50 | plantsme | |
CCRCinnamoyl-CoA reductase family | Stable locus | 475 | 50 | plantsme | |
CCoAOMTCaffeoyl-CoA O-methyltransferase family | Stable locus | 91 | 50 | plantsme | |
COMTCaffeic-acid O-methyltransferase family | Stable locus | 155 | 50 | plantsme | |
CSECaffeoyl shikimate esterase family | Stable locus | 246 | 50 | plantsme | |
F5H_CYP84AF5H / CYP84A enzyme-family module | Stable locus | 78 | 50 | plantsme | |
HCTHydroxycinnamoyl-CoA shikimate/quinate transferase family | Stable locus | 421 | 50 | plantsme | |
LACLAC enzyme-family module | Stable locus | 427 | 50 | plantsme | |
PALPhenylalanine ammonia-lyase family | Stable locus | 166 | 50 | plantsme | |
PODClass III peroxidase family | Stable locus | 587 | 50 | plantsme |
Rosmarinic acid
Rosmarinic-acid biosynthesis
36 recordsView records
| Family | Evidence state | Source count | Candidate IDs | Evidence mode | |
|---|---|---|---|---|---|
PALPhenylalanine ammonia-lyase family | Stable locus | 47 | 36 | gene tree | |
4CL4-coumarate--CoA ligase family | Reference-only | 290 | 0 | family count | — |
C4HCinnamate 4-hydroxylase family | Reference-only | 94 | 0 | family count | — |
CPRCytochrome P450 reductase family | Reference-only | 162 | 0 | family count | — |
HPPRHydroxyphenylpyruvate reductase family | Reference-only | 236 | 0 | family count | — |
RASRosmarinic-acid synthase family | Reference-only | 61 | 0 | family count | — |
TATTyrosine aminotransferase family | Reference-only | 540 | 0 | family count | — |
Flavonoid
Flavonoid biosynthesis
613 recordsView records
| Family | Evidence state | Source count | Candidate IDs | Evidence mode | |
|---|---|---|---|---|---|
4CL4-coumarate--CoA ligase family | Stable locus | 299 | 50 | plantsme | |
ANS_LDOXANS / LDOX enzyme-family module | Stable locus | 135 | 50 | plantsme | |
C4HCinnamate 4-hydroxylase family | Stable locus | 173 | 50 | plantsme | |
CHIChalcone isomerase family | Stable locus | 168 | 50 | plantsme | |
CHSChalcone synthase family | Stable locus | 96 | 50 | plantsme | |
DFRDihydroflavonol 4-reductase family | Stable locus | 274 | 50 | plantsme | |
F3HFlavanone 3-hydroxylase family | Stable locus | 219 | 50 | plantsme | |
F3H_CYP75BF3H / CYP75B enzyme-family module | Stable locus | 215 | 50 | plantsme | |
IFRIFR enzyme-family module | Stable locus | 50 | 50 | plantsme | |
PALPhenylalanine ammonia-lyase family | Stable locus | 196 | 50 | plantsme | |
UFGTUFGT enzyme-family module | Stable locus | 107 | 50 | plantsme | |
F35H_CYP75AF35H / CYP75A enzyme-family module | Stable locus | 29 | 29 | plantsme | |
ANRANR enzyme-family module | Stable locus | 26 | 26 | plantsme | |
FNSFNS enzyme-family module | Stable locus | 6 | 6 | plantsme | |
FLSFlavonol synthase family | Stable locus | 2 | 2 | plantsme |
Alkaloid
Alkaloid-related biosynthesis
956 recordsView records
Steroid / sterol
Steroid and sterol biosynthesis
559 recordsView records
Interpretation
Evidence boundary
Stable locus
A concrete candidate identifier is provided and can be inspected.
Reference-only
A family count is available, but no locus ID is asserted for this module.
Computational candidates
Computational enzyme-family candidates and genome-structure support, not validated biochemical function.